RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 GRINAQ7Z429 371 aa15.11■□□□□ 0.01
CLN3-216ENST00000565316 ANKRD46Q86W74 232 aa15.11■□□□□ 0.01
CLN3-216ENST00000565316 VPS37AQ8NEZ2 397 aa15.11■□□□□ 0.01
CLN3-216ENST00000565316 RAB8BQ92930 207 aa15.11■□□□□ 0.01
CLN3-216ENST00000565316 PPP1R36Q96LQ0 422 aa15.11■□□□□ 0.01
CLN3-216ENST00000565316 SORT1Q99523 831 aa15.11■□□□□ 0.01
CLN3-216ENST00000565316 SSU72Q9NP77 194 aaKnown RBP15.11■□□□□ 0.01
CLN3-216ENST00000565316 CISD1Q9NZ45 108 aaKnown RBP15.11■□□□□ 0.01
CLN3-216ENST00000565316 HDGFL3Q9Y3E1 203 aa15.11■□□□□ 0.01
CLN3-216ENST00000565316 PLCE1Q9P212 2302 aa15.1■□□□□ 0.01
CLN3-216ENST00000565316 WDR91A4D1P6 747 aa15.1■□□□□ 0.01
CLN3-216ENST00000565316 CPSF4O95639 269 aaKnown RBP15.1■□□□□ 0.01
CLN3-216ENST00000565316 DHRS4L1P0CG22 281 aa15.1■□□□□ 0.01
CLN3-216ENST00000565316 NTF4P34130 210 aa15.1■□□□□ 0.01
CLN3-216ENST00000565316 ACVR1BP36896 505 aa15.1■□□□□ 0.01
CLN3-216ENST00000565316 CLNS1AP54105 237 aaKnown RBP15.1■□□□□ 0.01
CLN3-216ENST00000565316 DPY19L1Q2PZI1 675 aa15.1■□□□□ 0.01
CLN3-216ENST00000565316 WDR93Q6P2C0 686 aa15.1■□□□□ 0.01
CLN3-216ENST00000565316 ADGRG3Q86Y34 549 aa15.1■□□□□ 0.01
CLN3-216ENST00000565316 MREGQ8N565 214 aa15.1■□□□□ 0.01
CLN3-216ENST00000565316 RADILQ96JH8 1075 aa15.1■□□□□ 0.01
CLN3-216ENST00000565316 ARL5BQ96KC2 179 aa15.1■□□□□ 0.01
CLN3-216ENST00000565316 CCDC115Q96NT0 180 aa15.1■□□□□ 0.01
CLN3-216ENST00000565316 ST6GALNAC1Q9NSC7 600 aaPredicted RBP15.1■□□□□ 0.01
CLN3-216ENST00000565316 ABCA1O95477 2261 aa15.09■□□□□ 0.01
CLN3-216ENST00000565316 GPR171O14626 319 aa15.09■□□□□ 0.01
CLN3-216ENST00000565316 ADAM11O75078 769 aa15.09■□□□□ 0.01
CLN3-216ENST00000565316 TFPIP10646 304 aa15.09■□□□□ 0.01
CLN3-216ENST00000565316 KHKP50053 298 aa15.09■□□□□ 0.01
CLN3-216ENST00000565316 KCNJ10P78508 379 aa15.09■□□□□ 0.01
CLN3-216ENST00000565316 H3F3AP84243 136 aa15.09■□□□□ 0.01
CLN3-216ENST00000565316 CHRNEQ04844 493 aa15.09■□□□□ 0.01
CLN3-216ENST00000565316 FAPQ12884 760 aa15.09■□□□□ 0.01
CLN3-216ENST00000565316 SPANXN4Q5MJ08 99 aa15.09■□□□□ 0.01
CLN3-216ENST00000565316 KIRREL3Q8IZU9 778 aa15.09■□□□□ 0.01
CLN3-216ENST00000565316 MAPK1IP1LQ8NDC0 245 aa15.09■□□□□ 0.01
CLN3-216ENST00000565316 ZNF563Q8TA94 476 aa15.09■□□□□ 0.01
CLN3-216ENST00000565316 PIGXQ8TBF5 258 aa15.09■□□□□ 0.01
CLN3-216ENST00000565316 ZHX1-C8orf76Q96EF9 292 aa15.09■□□□□ 0.01
CLN3-216ENST00000565316 BARX1Q9HBU1 254 aaPredicted RBP15.09■□□□□ 0.01
CLN3-216ENST00000565316 FAIMQ9NVQ4 179 aa15.09■□□□□ 0.01
CLN3-216ENST00000565316 MALT1Q9UDY8 824 aa15.09■□□□□ 0.01
CLN3-216ENST00000565316 BTNL2Q9UIR0 455 aa15.09■□□□□ 0.01
CLN3-216ENST00000565316 TRAPPC4Q9Y296 219 aa15.09■□□□□ 0.01
CLN3-216ENST00000565316 NOSIPQ9Y314 301 aaKnown RBP15.09■□□□□ 0.01
CLN3-216ENST00000565316 CLDN24A6NM45 220 aa15.08■□□□□ 0
CLN3-216ENST00000565316 HMGN4O00479 90 aa15.08■□□□□ 0
CLN3-216ENST00000565316 ABCD4O14678 606 aa15.08■□□□□ 0
CLN3-216ENST00000565316 TM9SF1O15321 606 aa15.08■□□□□ 0
CLN3-216ENST00000565316 NDUFS7O75251 213 aa15.08■□□□□ 0
CLN3-216ENST00000565316 LBPP18428 481 aa15.08■□□□□ 0
CLN3-216ENST00000565316 RYKP34925 604 aa15.08■□□□□ 0
CLN3-216ENST00000565316 HTR3AP46098 478 aa15.08■□□□□ 0
CLN3-216ENST00000565316 SLC1A6P48664 564 aa15.08■□□□□ 0
CLN3-216ENST00000565316 CDH11P55287 796 aa15.08■□□□□ 0
CLN3-216ENST00000565316 DMTNQ08495 405 aa15.08■□□□□ 0
CLN3-216ENST00000565316 KRT71Q3SY84 523 aa15.08■□□□□ 0
CLN3-216ENST00000565316 OGFOD2Q6N063 350 aa15.08■□□□□ 0
CLN3-216ENST00000565316 CMIPQ8IY22 773 aa15.08■□□□□ 0
CLN3-216ENST00000565316 ARFGAP2Q8N6H7 521 aa15.08■□□□□ 0
CLN3-216ENST00000565316 CNOT9Q92600 299 aaKnown RBP15.08■□□□□ 0
CLN3-216ENST00000565316 APH1AQ96BI3 265 aa15.08■□□□□ 0
CLN3-216ENST00000565316 TRNT1Q96Q11 434 aaKnown RBP15.08■□□□□ 0
CLN3-216ENST00000565316 SLC35A5Q9BS91 424 aa15.08■□□□□ 0
CLN3-216ENST00000565316 OR11A1Q9GZK7 315 aa15.08■□□□□ 0
CLN3-216ENST00000565316 MEAF6Q9HAF1 191 aa15.08■□□□□ 0
CLN3-216ENST00000565316 MARCOQ9UEW3 520 aaPredicted RBP15.08■□□□□ 0
CLN3-216ENST00000565316 MGAT4BQ9UQ53 548 aa15.08■□□□□ 0
CLN3-216ENST00000565316 SLC25A15Q9Y619 301 aa15.08■□□□□ 0
CLN3-216ENST00000565316 E9PBE3 544 aa15.07■□□□□ 0
CLN3-216ENST00000565316 PDLIM1O00151 329 aa15.07■□□□□ 0
CLN3-216ENST00000565316 RGS16O15492 202 aaPredicted RBP15.07■□□□□ 0
CLN3-216ENST00000565316 IGHV3-9P01782 118 aa15.07■□□□□ 0
CLN3-216ENST00000565316 C1QCP02747 245 aa15.07■□□□□ 0
CLN3-216ENST00000565316 S100A3P33764 101 aa15.07■□□□□ 0
CLN3-216ENST00000565316 CHI3L1P36222 383 aaPredicted RBP15.07■□□□□ 0
CLN3-216ENST00000565316 TXNL4AP83876 142 aaKnown RBP15.07■□□□□ 0
CLN3-216ENST00000565316 MPP2Q14168 576 aa15.07■□□□□ 0
CLN3-216ENST00000565316 FAM174BQ3ZCQ3 159 aa15.07■□□□□ 0
CLN3-216ENST00000565316 CCDC103Q8IW40 242 aa15.07■□□□□ 0
CLN3-216ENST00000565316 TEX37Q96LM6 180 aa15.07■□□□□ 0
CLN3-216ENST00000565316 MUS81Q96NY9 551 aa15.07■□□□□ 0
CLN3-216ENST00000565316 NUF2Q9BZD4 464 aa15.07■□□□□ 0
CLN3-216ENST00000565316 SLC38A1Q9H2H9 487 aa15.07■□□□□ 0
CLN3-216ENST00000565316 ALG2Q9H553 416 aa15.07■□□□□ 0
CLN3-216ENST00000565316 ASB6Q9NWX5 421 aa15.07■□□□□ 0
CLN3-216ENST00000565316 TAS2R16Q9NYV7 291 aa15.07■□□□□ 0
CLN3-216ENST00000565316 TMEM181Q9P2C4 612 aa15.07■□□□□ 0
CLN3-216ENST00000565316 GDF2Q9UK05 429 aaPredicted RBP15.07■□□□□ 0
CLN3-216ENST00000565316 B3GALT5Q9Y2C3 310 aa15.07■□□□□ 0
CLN3-216ENST00000565316 AGAP5A6NIR3 686 aa15.06■□□□□ 0
CLN3-216ENST00000565316 E7EQL1 145 aa15.06■□□□□ 0
CLN3-216ENST00000565316 FAAHO00519 579 aa15.06■□□□□ 0
CLN3-216ENST00000565316 ZNF208O43345 1280 aa15.06■□□□□ 0
CLN3-216ENST00000565316 CD5LO43866 347 aa15.06■□□□□ 0
CLN3-216ENST00000565316 MRPL33O75394 65 aaKnown RBP15.06■□□□□ 0
CLN3-216ENST00000565316 RAD51DO75771 328 aa15.06■□□□□ 0
CLN3-216ENST00000565316 RPS4Y1P22090 263 aaKnown RBP15.06■□□□□ 0
CLN3-216ENST00000565316 PTAFRP25105 342 aa15.06■□□□□ 0
CLN3-216ENST00000565316 IDH2P48735 452 aaKnown RBP15.06■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms