RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 SPAG7O75391 227 aa4.65□□□□□ -1.67
VPS35-205ENST00000563984 UPK3AO75631 287 aa4.65□□□□□ -1.67
VPS35-205ENST00000563984 EIF3GO75821 320 aaKnown RBP eCLIP4.65□□□□□ -1.67
VPS35-205ENST00000563984 BRI3O95415 125 aa4.65□□□□□ -1.67
VPS35-205ENST00000563984 GLP2RO95838 553 aa4.65□□□□□ -1.67
VPS35-205ENST00000563984 PTTG1O95997 202 aa4.65□□□□□ -1.67
VPS35-205ENST00000563984 PAEPP09466 180 aa4.65□□□□□ -1.67
VPS35-205ENST00000563984 FGF5P12034 268 aa4.65□□□□□ -1.67
VPS35-205ENST00000563984 PAICSP22234 425 aaKnown RBP4.65□□□□□ -1.67
VPS35-205ENST00000563984 ATP5A1P25705 553 aaKnown RBP4.65□□□□□ -1.67
VPS35-205ENST00000563984 SLC6A1P30531 599 aa4.65□□□□□ -1.67
VPS35-205ENST00000563984 GNRHRP30968 328 aa4.65□□□□□ -1.67
VPS35-205ENST00000563984 CDKN1AP38936 164 aa4.65□□□□□ -1.67
VPS35-205ENST00000563984 LHX1P48742 406 aa4.65□□□□□ -1.67
VPS35-205ENST00000563984 MAZP56270 477 aaKnown RBP4.65□□□□□ -1.67
VPS35-205ENST00000563984 ZP1P60852 638 aa4.65□□□□□ -1.67
VPS35-205ENST00000563984 LSM6P62312 80 aaKnown RBP4.65□□□□□ -1.67
VPS35-205ENST00000563984 RPL19P84098 196 aaKnown RBP4.65□□□□□ -1.67
VPS35-205ENST00000563984 OGDHQ02218 1023 aa4.65□□□□□ -1.67
VPS35-205ENST00000563984 TLE4Q04727 773 aa4.65□□□□□ -1.67
VPS35-205ENST00000563984 AESQ08117 197 aa4.65□□□□□ -1.67
VPS35-205ENST00000563984 PDCLQ13371 301 aa4.65□□□□□ -1.67
VPS35-205ENST00000563984 INPP5JQ15735 1006 aaPredicted RBP4.65□□□□□ -1.67
VPS35-205ENST00000563984 TAB1Q15750 504 aa4.65□□□□□ -1.67
VPS35-205ENST00000563984 ZBTB6Q15916 424 aa4.65□□□□□ -1.67
VPS35-205ENST00000563984 KNOP1Q1ED39 458 aaKnown RBP4.65□□□□□ -1.67
VPS35-205ENST00000563984 ANKRD55Q3KP44 614 aa4.65□□□□□ -1.67
VPS35-205ENST00000563984 VPS26BQ4G0F5 336 aa4.65□□□□□ -1.67
VPS35-205ENST00000563984 SLC25A53Q5H9E4 307 aa4.65□□□□□ -1.67
VPS35-205ENST00000563984 RSBN1Q5VWQ0 802 aaPredicted RBP4.65□□□□□ -1.67
VPS35-205ENST00000563984 LPCAT4Q643R3 524 aa4.65□□□□□ -1.67
VPS35-205ENST00000563984 LEMD1Q68G75 181 aa4.65□□□□□ -1.67
VPS35-205ENST00000563984 KIAA0930Q6ICG6 404 aaPredicted RBP4.65□□□□□ -1.67
VPS35-205ENST00000563984 OR8G2PQ6IF36 304 aa4.65□□□□□ -1.67
VPS35-205ENST00000563984 APOBEC3HQ6NTF7 200 aaKnown RBP4.65□□□□□ -1.67
VPS35-205ENST00000563984 PRSS55Q6UWB4 352 aaPredicted RBP4.65□□□□□ -1.67
VPS35-205ENST00000563984 LINGO4Q6UY18 593 aa4.65□□□□□ -1.67
VPS35-205ENST00000563984 DPY19L2P2Q6ZN68 376 aa4.65□□□□□ -1.67
VPS35-205ENST00000563984 ZNF836Q6ZNA1 936 aa4.65□□□□□ -1.67
VPS35-205ENST00000563984 G2E3Q7L622 706 aa4.65□□□□□ -1.67
VPS35-205ENST00000563984 FAM220AQ7Z4H9 259 aa4.65□□□□□ -1.67
VPS35-205ENST00000563984 TMEM135Q86UB9 458 aa4.65□□□□□ -1.67
VPS35-205ENST00000563984 THOC6Q86W42 341 aaKnown RBP4.65□□□□□ -1.67
VPS35-205ENST00000563984 CARM1Q86X55 608 aa4.65□□□□□ -1.67
VPS35-205ENST00000563984 COMMD2Q86X83 199 aa4.65□□□□□ -1.67
VPS35-205ENST00000563984 CACUL1Q86Y37 369 aa4.65□□□□□ -1.67
VPS35-205ENST00000563984 SIAH3Q8IW03 269 aa4.65□□□□□ -1.67
VPS35-205ENST00000563984 C1orf87Q8N0U7 546 aa4.65□□□□□ -1.67
VPS35-205ENST00000563984 CLIP4Q8N3C7 705 aa4.65□□□□□ -1.67
VPS35-205ENST00000563984 GTPBP8Q8N3Z3 284 aaPredicted RBP4.65□□□□□ -1.67
VPS35-205ENST00000563984 Q8N402 240 aa4.65□□□□□ -1.67
VPS35-205ENST00000563984 ARRDC1Q8N5I2 433 aa4.65□□□□□ -1.67
VPS35-205ENST00000563984 TEX26Q8N6G2 289 aa4.65□□□□□ -1.67
VPS35-205ENST00000563984 TMEM161BQ8NDZ6 487 aa4.65□□□□□ -1.67
VPS35-205ENST00000563984 FBXO36Q8NEA4 188 aa4.65□□□□□ -1.67
VPS35-205ENST00000563984 OR8J3Q8NGG0 315 aa4.65□□□□□ -1.67
VPS35-205ENST00000563984 OR13C5Q8NGS8 318 aa4.65□□□□□ -1.67
VPS35-205ENST00000563984 PIGXQ8TBF5 258 aa4.65□□□□□ -1.67
VPS35-205ENST00000563984 TRMT10AQ8TBZ6 339 aaKnown RBP4.65□□□□□ -1.67
VPS35-205ENST00000563984 PPP4R1Q8TF05 950 aa4.65□□□□□ -1.67
VPS35-205ENST00000563984 PIH1D2Q8WWB5 315 aa4.65□□□□□ -1.67
VPS35-205ENST00000563984 ADAMTS14Q8WXS8 1223 aa4.65□□□□□ -1.67
VPS35-205ENST00000563984 ESAMQ96AP7 390 aa4.65□□□□□ -1.67
VPS35-205ENST00000563984 CMTM5Q96DZ9 223 aa4.65□□□□□ -1.67
VPS35-205ENST00000563984 PPP1R16AQ96I34 528 aa4.65□□□□□ -1.67
VPS35-205ENST00000563984 NARS2Q96I59 477 aaKnown RBP4.65□□□□□ -1.67
VPS35-205ENST00000563984 CPB2Q96IY4 423 aa4.65□□□□□ -1.67
VPS35-205ENST00000563984 LMLNQ96KR4 655 aa4.65□□□□□ -1.67
VPS35-205ENST00000563984 HARBI1Q96MB7 349 aa4.65□□□□□ -1.67
VPS35-205ENST00000563984 ZNF599Q96NL3 588 aa4.65□□□□□ -1.67
VPS35-205ENST00000563984 TSSK3Q96PN8 268 aa4.65□□□□□ -1.67
VPS35-205ENST00000563984 OR2V2Q96R30 315 aa4.65□□□□□ -1.67
VPS35-205ENST00000563984 PHB2Q99623 299 aa4.65□□□□□ -1.67
VPS35-205ENST00000563984 IL12RB2Q99665 862 aa4.65□□□□□ -1.67
VPS35-205ENST00000563984 SRSF8Q9BRL6 282 aaKnown RBP4.65□□□□□ -1.67
VPS35-205ENST00000563984 ELOVL4Q9GZR5 314 aa4.65□□□□□ -1.67
VPS35-205ENST00000563984 COMMD4Q9H0A8 199 aa4.65□□□□□ -1.67
VPS35-205ENST00000563984 MIXL1Q9H2W2 232 aa4.65□□□□□ -1.67
VPS35-205ENST00000563984 CCDC134Q9H6E4 229 aa4.65□□□□□ -1.67
VPS35-205ENST00000563984 SEBOXQ9HB31 216 aaPredicted RBP4.65□□□□□ -1.67
VPS35-205ENST00000563984 MYOZ2Q9NPC6 264 aa4.65□□□□□ -1.67
VPS35-205ENST00000563984 ACOXLQ9NUZ1 547 aa4.65□□□□□ -1.67
VPS35-205ENST00000563984 BEX4Q9NWD9 120 aaPredicted RBP4.65□□□□□ -1.67
VPS35-205ENST00000563984 CNOT2Q9NZN8 540 aaKnown RBP4.65□□□□□ -1.67
VPS35-205ENST00000563984 COPS7AQ9UBW8 275 aa4.65□□□□□ -1.67
VPS35-205ENST00000563984 FBXL17Q9UF56 701 aa4.65□□□□□ -1.67
VPS35-205ENST00000563984 SLC7A11Q9UPY5 501 aa4.65□□□□□ -1.67
VPS35-205ENST00000563984 CNTN6Q9UQ52 1028 aa4.65□□□□□ -1.67
VPS35-205ENST00000563984 HS3ST3B1Q9Y662 390 aa4.65□□□□□ -1.67
VPS35-205ENST00000563984 KPTNQ9Y664 436 aa4.65□□□□□ -1.67
VPS35-205ENST00000563984 ZMYM6O95789 1325 aa4.65□□□□□ -1.67
VPS35-205ENST00000563984 PSME4Q14997 1843 aa4.65□□□□□ -1.67
VPS35-205ENST00000563984 JCADQ9P266 1359 aa4.65□□□□□ -1.67
VPS35-205ENST00000563984 CCDC18Q5T9S5 1454 aa4.64□□□□□ -1.67
VPS35-205ENST00000563984 CKAP5Q14008 2032 aa4.64□□□□□ -1.67
VPS35-205ENST00000563984 KCNE1BA0A087WTH5 132 aa4.64□□□□□ -1.67
VPS35-205ENST00000563984 LOC102723996A0A087X1L8 192 aa4.64□□□□□ -1.67
VPS35-205ENST00000563984 TRBV7-9A0A0J9YWB2 115 aa4.64□□□□□ -1.67
VPS35-205ENST00000563984 HSFX4A0A1B0GTS1 333 aaPredicted RBP4.64□□□□□ -1.67
VPS35-205ENST00000563984 HSFX3A0A1B0GWH4 333 aaPredicted RBP4.64□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms