RNA–Protein interactions for RNA: ENST00000563842.5

CLK3-213, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 860 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-213ENST00000563842 ROBO4Q8WZ75 1007 aa11.97□□□□□ -0.49
CLK3-213ENST00000563842 MAL2Q969L2 176 aa11.97□□□□□ -0.49
CLK3-213ENST00000563842 ZNF524Q96C55 264 aa11.97□□□□□ -0.49
CLK3-213ENST00000563842 DDIT4LQ96D03 193 aa11.97□□□□□ -0.49
CLK3-213ENST00000563842 ANKRD27Q96NW4 1050 aa11.97□□□□□ -0.49
CLK3-213ENST00000563842 DACH2Q96NX9 599 aa11.97□□□□□ -0.49
CLK3-213ENST00000563842 ZNF607Q96SK3 696 aa11.97□□□□□ -0.49
CLK3-213ENST00000563842 CGREF1Q99674 301 aa11.97□□□□□ -0.49
CLK3-213ENST00000563842 SRXN1Q9BYN0 137 aa11.97□□□□□ -0.49
CLK3-213ENST00000563842 OPN3Q9H1Y3 402 aaPredicted RBP11.97□□□□□ -0.49
CLK3-213ENST00000563842 KLHL14Q9P2G3 628 aa11.97□□□□□ -0.49
CLK3-213ENST00000563842 SPG11Q96JI7 2443 aa11.97□□□□□ -0.49
CLK3-213ENST00000563842 TMED7-TICAM2A0A0A6YYA0 188 aa11.96□□□□□ -0.49
CLK3-213ENST00000563842 A0A1W2PNR3 127 aa11.96□□□□□ -0.49
CLK3-213ENST00000563842 PRORSD1PA6NEY8 169 aa11.96□□□□□ -0.49
CLK3-213ENST00000563842 CASKO14936 926 aa11.96□□□□□ -0.49
CLK3-213ENST00000563842 ZNF208O43345 1280 aa11.96□□□□□ -0.49
CLK3-213ENST00000563842 SERPINB7O75635 380 aa11.96□□□□□ -0.49
CLK3-213ENST00000563842 PMS2P2O95744 297 aa11.96□□□□□ -0.49
CLK3-213ENST00000563842 NPPAP01160 153 aa11.96□□□□□ -0.49
CLK3-213ENST00000563842 YES1P07947 543 aa11.96□□□□□ -0.49
CLK3-213ENST00000563842 DIO1P49895 249 aa11.96□□□□□ -0.49
CLK3-213ENST00000563842 PLAURQ03405 335 aa11.96□□□□□ -0.49
CLK3-213ENST00000563842 RBBP4Q09028 425 aa11.96□□□□□ -0.49
CLK3-213ENST00000563842 SNTB1Q13884 538 aaKnown RBP11.96□□□□□ -0.49
CLK3-213ENST00000563842 CYLC2Q14093 348 aaPredicted RBP11.96□□□□□ -0.49
CLK3-213ENST00000563842 KRTAP21-3Q3LHN1 58 aa11.96□□□□□ -0.49
CLK3-213ENST00000563842 MMEL1Q495T6 779 aa11.96□□□□□ -0.49
CLK3-213ENST00000563842 COQ5Q5HYK3 327 aa11.96□□□□□ -0.49
CLK3-213ENST00000563842 WBP2NLQ6ICG8 309 aa11.96□□□□□ -0.49
CLK3-213ENST00000563842 ADGRG3Q86Y34 549 aa11.96□□□□□ -0.49
CLK3-213ENST00000563842 ZNF610Q8N9Z0 462 aa11.96□□□□□ -0.49
CLK3-213ENST00000563842 HIPK4Q8NE63 616 aa11.96□□□□□ -0.49
CLK3-213ENST00000563842 NFKBIDQ8NI38 313 aa11.96□□□□□ -0.49
CLK3-213ENST00000563842 SH3GL1Q99961 368 aa11.96□□□□□ -0.49
CLK3-213ENST00000563842 CPPED1Q9BRF8 314 aaPredicted RBP11.96□□□□□ -0.49
CLK3-213ENST00000563842 EVA1AQ9H8M9 152 aa11.96□□□□□ -0.49
CLK3-213ENST00000563842 RLIMQ9NVW2 624 aa11.96□□□□□ -0.49
CLK3-213ENST00000563842 KLHL13Q9P2N7 655 aa11.96□□□□□ -0.49
CLK3-213ENST00000563842 CLEC4AQ9UMR7 237 aa11.96□□□□□ -0.49
CLK3-213ENST00000563842 EDARQ9UNE0 448 aa11.96□□□□□ -0.49
CLK3-213ENST00000563842 ANGPT4Q9Y264 503 aa11.96□□□□□ -0.49
CLK3-213ENST00000563842 TMED7Q9Y3B3 224 aa11.96□□□□□ -0.49
CLK3-213ENST00000563842 SH3D21A4FU49 640 aa11.95□□□□□ -0.5
CLK3-213ENST00000563842 A6NNC1 897 aa11.95□□□□□ -0.5
CLK3-213ENST00000563842 BBIP1A8MTZ0 92 aa11.95□□□□□ -0.5
CLK3-213ENST00000563842 C16orf97H3BN30 126 aa11.95□□□□□ -0.5
CLK3-213ENST00000563842 AP3D1O14617 1153 aa11.95□□□□□ -0.5
CLK3-213ENST00000563842 SLC22A2O15244 555 aa11.95□□□□□ -0.5
CLK3-213ENST00000563842 CYTIPO60759 359 aa11.95□□□□□ -0.5
CLK3-213ENST00000563842 ADAM11O75078 769 aa11.95□□□□□ -0.5
CLK3-213ENST00000563842 CXCR1P25024 350 aa11.95□□□□□ -0.5
CLK3-213ENST00000563842 TACR3P29371 465 aa11.95□□□□□ -0.5
CLK3-213ENST00000563842 AGTR1P30556 359 aa11.95□□□□□ -0.5
CLK3-213ENST00000563842 PRKAR1BP31321 381 aa11.95□□□□□ -0.5
CLK3-213ENST00000563842 ACAA2P42765 397 aaKnown RBP11.95□□□□□ -0.5
CLK3-213ENST00000563842 FAM27E3Q08E93 113 aa11.95□□□□□ -0.5
CLK3-213ENST00000563842 RASGEF1BQ0VAM2 473 aa11.95□□□□□ -0.5
CLK3-213ENST00000563842 SCARB2Q14108 478 aa11.95□□□□□ -0.5
CLK3-213ENST00000563842 CYP51A1Q16850 503 aa11.95□□□□□ -0.5
CLK3-213ENST00000563842 FBXW10Q5XX13 1052 aa11.95□□□□□ -0.5
CLK3-213ENST00000563842 ZNF474Q6S9Z5 364 aaPredicted RBP11.95□□□□□ -0.5
CLK3-213ENST00000563842 MTDHQ86UE4 582 aaKnown RBP11.95□□□□□ -0.5
CLK3-213ENST00000563842 SLC30A8Q8IWU4 369 aa11.95□□□□□ -0.5
CLK3-213ENST00000563842 CLIP4Q8N3C7 705 aa11.95□□□□□ -0.5
CLK3-213ENST00000563842 PCYOX1LQ8NBM8 494 aa11.95□□□□□ -0.5
CLK3-213ENST00000563842 C11orf65Q8NCR3 313 aa11.95□□□□□ -0.5
CLK3-213ENST00000563842 LINC01560Q8TB33 94 aa11.95□□□□□ -0.5
CLK3-213ENST00000563842 ABHD3Q8WU67 409 aa11.95□□□□□ -0.5
CLK3-213ENST00000563842 ADAM19Q9H013 955 aa11.95□□□□□ -0.5
CLK3-213ENST00000563842 SAR1AQ9NR31 198 aa11.95□□□□□ -0.5
CLK3-213ENST00000563842 KLHL28Q9NXS3 571 aa11.95□□□□□ -0.5
CLK3-213ENST00000563842 TMEM181Q9P2C4 612 aa11.95□□□□□ -0.5
CLK3-213ENST00000563842 OSGIN1Q9UJX0 560 aa11.95□□□□□ -0.5
CLK3-213ENST00000563842 SLC13A4Q9UKG4 626 aa11.95□□□□□ -0.5
CLK3-213ENST00000563842 TRAPPC4Q9Y296 219 aa11.95□□□□□ -0.5
CLK3-213ENST00000563842 AKAP6Q13023 2319 aa11.95□□□□□ -0.5
CLK3-213ENST00000563842 LRBAP50851 2863 aa11.94□□□□□ -0.5
CLK3-213ENST00000563842 EIF1BO60739 113 aaKnown RBP11.94□□□□□ -0.5
CLK3-213ENST00000563842 CTAG2O75638 210 aa11.94□□□□□ -0.5
CLK3-213ENST00000563842 GKN3PP0CG01 181 aa11.94□□□□□ -0.5
CLK3-213ENST00000563842 SLC35A1P78382 337 aa11.94□□□□□ -0.5
CLK3-213ENST00000563842 KLF10Q13118 480 aa11.94□□□□□ -0.5
CLK3-213ENST00000563842 TRMT5Q32P41 509 aaKnown RBP11.94□□□□□ -0.5
CLK3-213ENST00000563842 CGB2Q6NT52 195 aa11.94□□□□□ -0.5
CLK3-213ENST00000563842 DHRS4L2Q6PKH6 230 aa11.94□□□□□ -0.5
CLK3-213ENST00000563842 RETREG3Q86VR2 466 aa11.94□□□□□ -0.5
CLK3-213ENST00000563842 TUSC5Q8IXB3 177 aa11.94□□□□□ -0.5
CLK3-213ENST00000563842 CADM2Q8N3J6 435 aa11.94□□□□□ -0.5
CLK3-213ENST00000563842 PIGXQ8TBF5 258 aa11.94□□□□□ -0.5
CLK3-213ENST00000563842 ZNF317Q96PQ6 595 aaPredicted RBP11.94□□□□□ -0.5
CLK3-213ENST00000563842 NAA11Q9BSU3 229 aaPredicted RBP11.94□□□□□ -0.5
CLK3-213ENST00000563842 POLDIP3Q9BY77 421 aaKnown RBP11.94□□□□□ -0.5
CLK3-213ENST00000563842 POTEKPQ9BYX7 375 aa11.94□□□□□ -0.5
CLK3-213ENST00000563842 IKZF5Q9H5V7 419 aa11.94□□□□□ -0.5
CLK3-213ENST00000563842 C12orf49Q9H741 205 aa11.94□□□□□ -0.5
CLK3-213ENST00000563842 BCO1Q9HAY6 547 aa11.94□□□□□ -0.5
CLK3-213ENST00000563842 RASSF1Q9NS23 344 aa11.94□□□□□ -0.5
CLK3-213ENST00000563842 GID8Q9NWU2 228 aa11.94□□□□□ -0.5
CLK3-213ENST00000563842 ZNF226Q9NYT6 803 aa11.94□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms