RNA–Protein interactions for RNA: ENST00000561797.1

VPS39-203, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 545 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-203ENST00000561797 ATP4BP51164 291 aa13.93□□□□□ -0.18
VPS39-203ENST00000561797 EPS8Q12929 822 aa13.93□□□□□ -0.18
VPS39-203ENST00000561797 SQLEQ14534 574 aa13.93□□□□□ -0.18
VPS39-203ENST00000561797 LIN52Q52LA3 116 aa13.93□□□□□ -0.18
VPS39-203ENST00000561797 PAGE3Q5JUK9 113 aa13.93□□□□□ -0.18
VPS39-203ENST00000561797 PAMR1Q6UXH9 720 aa13.93□□□□□ -0.18
VPS39-203ENST00000561797 TFAP2EQ6VUC0 442 aa13.93□□□□□ -0.18
VPS39-203ENST00000561797 CXorf67Q86X51 503 aaPredicted RBP13.93□□□□□ -0.18
VPS39-203ENST00000561797 MAL2Q969L2 176 aa13.93□□□□□ -0.18
VPS39-203ENST00000561797 ZNF300Q96RE9 604 aaPredicted RBP13.93□□□□□ -0.18
VPS39-203ENST00000561797 CACYBPQ9HB71 228 aaKnown RBP13.93□□□□□ -0.18
VPS39-203ENST00000561797 GP6Q9HCN6 339 aa13.93□□□□□ -0.18
VPS39-203ENST00000561797 NPHS2Q9NP85 383 aa13.93□□□□□ -0.18
VPS39-203ENST00000561797 SLC52A3Q9NQ40 469 aa13.93□□□□□ -0.18
VPS39-203ENST00000561797 OSGIN1Q9UJX0 560 aa13.93□□□□□ -0.18
VPS39-203ENST00000561797 ING1Q9UK53 422 aaPredicted RBP13.93□□□□□ -0.18
VPS39-203ENST00000561797 ZNF232Q9UNY5 417 aa13.93□□□□□ -0.18
VPS39-203ENST00000561797 ZNF443Q9Y2A4 671 aaPredicted RBP13.93□□□□□ -0.18
VPS39-203ENST00000561797 PRRC2AP48634 2157 aaKnown RBP13.92□□□□□ -0.18
VPS39-203ENST00000561797 RAI1Q7Z5J4 1906 aaPredicted RBP13.92□□□□□ -0.18
VPS39-203ENST00000561797 TMEM72A0PK05 275 aa13.92□□□□□ -0.18
VPS39-203ENST00000561797 CDHR4A6H8M9 788 aa13.92□□□□□ -0.18
VPS39-203ENST00000561797 DEFB108AA8MXU0 73 aa13.92□□□□□ -0.18
VPS39-203ENST00000561797 EDF1O60869 148 aaKnown RBP13.92□□□□□ -0.18
VPS39-203ENST00000561797 RAF1P04049 648 aa13.92□□□□□ -0.18
VPS39-203ENST00000561797 THBDP07204 575 aa13.92□□□□□ -0.18
VPS39-203ENST00000561797 UQCRBP14927 111 aa13.92□□□□□ -0.18
VPS39-203ENST00000561797 HTR3AP46098 478 aa13.92□□□□□ -0.18
VPS39-203ENST00000561797 POLR2HP52434 150 aaKnown RBP13.92□□□□□ -0.18
VPS39-203ENST00000561797 OR2B6P58173 313 aa13.92□□□□□ -0.18
VPS39-203ENST00000561797 FADDQ13158 208 aa13.92□□□□□ -0.18
VPS39-203ENST00000561797 KEAP1Q14145 624 aa13.92□□□□□ -0.18
VPS39-203ENST00000561797 LARS2Q15031 903 aaKnown RBP13.92□□□□□ -0.18
VPS39-203ENST00000561797 TSC22D1Q15714 1073 aa13.92□□□□□ -0.18
VPS39-203ENST00000561797 LRIF1Q5T3J3 769 aa13.92□□□□□ -0.18
VPS39-203ENST00000561797 ALKBH2Q6NS38 261 aa13.92□□□□□ -0.18
VPS39-203ENST00000561797 SPNS3Q6ZMD2 512 aa13.92□□□□□ -0.18
VPS39-203ENST00000561797 ZC3HAV1Q7Z2W4 902 aaKnown RBP13.92□□□□□ -0.18
VPS39-203ENST00000561797 MTDHQ86UE4 582 aaKnown RBP13.92□□□□□ -0.18
VPS39-203ENST00000561797 MSRB3Q8IXL7 192 aa13.92□□□□□ -0.18
VPS39-203ENST00000561797 ZNF440Q8IYI8 595 aa13.92□□□□□ -0.18
VPS39-203ENST00000561797 CLIP4Q8N3C7 705 aa13.92□□□□□ -0.18
VPS39-203ENST00000561797 CADM2Q8N3J6 435 aa13.92□□□□□ -0.18
VPS39-203ENST00000561797 ZHX1-C8orf76Q96EF9 292 aa13.92□□□□□ -0.18
VPS39-203ENST00000561797 TACO1Q9BSH4 297 aaKnown RBP13.92□□□□□ -0.18
VPS39-203ENST00000561797 ACTR6Q9GZN1 396 aa13.92□□□□□ -0.18
VPS39-203ENST00000561797 BCO1Q9HAY6 547 aa13.92□□□□□ -0.18
VPS39-203ENST00000561797 VAPAQ9P0L0 249 aa13.92□□□□□ -0.18
VPS39-203ENST00000561797 C5orf58C9J3I9 102 aa13.91□□□□□ -0.18
VPS39-203ENST00000561797 FAAHO00519 579 aa13.91□□□□□ -0.18
VPS39-203ENST00000561797 PMS2P2O95744 297 aa13.91□□□□□ -0.18
VPS39-203ENST00000561797 ADAP00813 363 aa13.91□□□□□ -0.18
VPS39-203ENST00000561797 PPP3CBP16298 524 aa13.91□□□□□ -0.18
VPS39-203ENST00000561797 FKBP2P26885 142 aaKnown RBP13.91□□□□□ -0.18
VPS39-203ENST00000561797 SLC1A3P43003 542 aa13.91□□□□□ -0.18
VPS39-203ENST00000561797 ZNF311Q5JNZ3 666 aa13.91□□□□□ -0.18
VPS39-203ENST00000561797 WFDC8Q8IUA0 241 aa13.91□□□□□ -0.18
VPS39-203ENST00000561797 DDIT4LQ96D03 193 aa13.91□□□□□ -0.18
VPS39-203ENST00000561797 FOXC2Q99958 501 aa13.91□□□□□ -0.18
VPS39-203ENST00000561797 A4GALTQ9NPC4 353 aa13.91□□□□□ -0.18
VPS39-203ENST00000561797 TMEM181Q9P2C4 612 aa13.91□□□□□ -0.18
VPS39-203ENST00000561797 NIPSNAP3AQ9UFN0 247 aaPredicted RBP13.91□□□□□ -0.18
VPS39-203ENST00000561797 PRSS50Q9UI38 385 aa13.91□□□□□ -0.18
VPS39-203ENST00000561797 GPR52Q9Y2T5 361 aa13.91□□□□□ -0.18
VPS39-203ENST00000561797 IFT52Q9Y366 437 aa13.91□□□□□ -0.18
VPS39-203ENST00000561797 HDGFL3Q9Y3E1 203 aa13.91□□□□□ -0.18
VPS39-203ENST00000561797 A0A0G2JND7 137 aa13.9□□□□□ -0.18
VPS39-203ENST00000561797 ZC3H12DA2A288 527 aaKnown RBP13.9□□□□□ -0.18
VPS39-203ENST00000561797 GCM2O75603 506 aaPredicted RBP13.9□□□□□ -0.18
VPS39-203ENST00000561797 ATE1O95260 518 aa13.9□□□□□ -0.18
VPS39-203ENST00000561797 THBS1P07996 1170 aa13.9□□□□□ -0.18
VPS39-203ENST00000561797 BMP2P12643 396 aa13.9□□□□□ -0.18
VPS39-203ENST00000561797 PRG2P13727 222 aa13.9□□□□□ -0.18
VPS39-203ENST00000561797 PSMB1P20618 241 aaKnown RBP13.9□□□□□ -0.18
VPS39-203ENST00000561797 PPIBP23284 216 aaKnown RBP13.9□□□□□ -0.18
VPS39-203ENST00000561797 CXCR1P25024 350 aa13.9□□□□□ -0.18
VPS39-203ENST00000561797 EDNRAP25101 427 aa13.9□□□□□ -0.18
VPS39-203ENST00000561797 ACAA2P42765 397 aaKnown RBP13.9□□□□□ -0.18
VPS39-203ENST00000561797 OR3A2P47893 321 aa13.9□□□□□ -0.18
VPS39-203ENST00000561797 CLK1P49759 484 aaKnown RBP13.9□□□□□ -0.18
VPS39-203ENST00000561797 IRX1P78414 480 aaPredicted RBP13.9□□□□□ -0.18
VPS39-203ENST00000561797 GCNT6Q5T4J0 391 aa13.9□□□□□ -0.18
VPS39-203ENST00000561797 RNF220Q5VTB9 566 aa13.9□□□□□ -0.18
VPS39-203ENST00000561797 CCDC103Q8IW40 242 aa13.9□□□□□ -0.18
VPS39-203ENST00000561797 ZNF100Q8IYN0 542 aa13.9□□□□□ -0.18
VPS39-203ENST00000561797 GABRG1Q8N1C3 465 aa13.9□□□□□ -0.18
VPS39-203ENST00000561797 C10orf111Q8N326 155 aa13.9□□□□□ -0.18
VPS39-203ENST00000561797 NFKBIDQ8NI38 313 aa13.9□□□□□ -0.18
VPS39-203ENST00000561797 BBS10Q8TAM1 723 aa13.9□□□□□ -0.18
VPS39-203ENST00000561797 S100PBPQ96BU1 408 aa13.9□□□□□ -0.18
VPS39-203ENST00000561797 HS3ST6Q96QI5 342 aa13.9□□□□□ -0.18
VPS39-203ENST00000561797 SPATA9Q9BWV2 254 aa13.9□□□□□ -0.18
VPS39-203ENST00000561797 ADAM19Q9H013 955 aa13.9□□□□□ -0.18
VPS39-203ENST00000561797 RABEP2Q9H5N1 569 aa13.9□□□□□ -0.18
VPS39-203ENST00000561797 ARMC7Q9H6L4 198 aa13.9□□□□□ -0.18
VPS39-203ENST00000561797 BCL2L10Q9HD36 194 aa13.9□□□□□ -0.18
VPS39-203ENST00000561797 TMEM45AQ9NWC5 275 aa13.9□□□□□ -0.18
VPS39-203ENST00000561797 CHST2Q9Y4C5 530 aa13.9□□□□□ -0.18
VPS39-203ENST00000561797 F8P00451 2351 aa13.89□□□□□ -0.19
VPS39-203ENST00000561797 A0A1W2PP18 115 aa13.89□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms