RNA–Protein interactions for RNA: ENST00000560628.1

LDLR-214, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 535 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-214ENST00000560628 FAM71CQ8NEG0 241 aa9.05□□□□□ -0.96
LDLR-214ENST00000560628 PIWIL2Q8TC59 973 aaKnown RBP9.05□□□□□ -0.96
LDLR-214ENST00000560628 IGFBPL1Q8WX77 278 aa9.05□□□□□ -0.96
LDLR-214ENST00000560628 COX4I2Q96KJ9 171 aa9.05□□□□□ -0.96
LDLR-214ENST00000560628 TRNT1Q96Q11 434 aaKnown RBP9.05□□□□□ -0.96
LDLR-214ENST00000560628 ZBTB18Q99592 522 aa9.05□□□□□ -0.96
LDLR-214ENST00000560628 SLC38A1Q9H2H9 487 aa9.05□□□□□ -0.96
LDLR-214ENST00000560628 CXorf56Q9H5V9 222 aa9.05□□□□□ -0.96
LDLR-214ENST00000560628 ESRP2Q9H6T0 727 aaKnown RBP9.05□□□□□ -0.96
LDLR-214ENST00000560628 NGBQ9NPG2 151 aa9.05□□□□□ -0.96
LDLR-214ENST00000560628 THAP1Q9NVV9 213 aa9.05□□□□□ -0.96
LDLR-214ENST00000560628 CHRNA9Q9UGM1 479 aa9.05□□□□□ -0.96
LDLR-214ENST00000560628 RNF115Q9Y4L5 304 aa9.05□□□□□ -0.96
LDLR-214ENST00000560628 FLNAP21333 2647 aaKnown RBP9.04□□□□□ -0.96
LDLR-214ENST00000560628 TMED7-TICAM2A0A0A6YYA0 188 aa9.04□□□□□ -0.96
LDLR-214ENST00000560628 AGAP5A6NIR3 686 aa9.04□□□□□ -0.96
LDLR-214ENST00000560628 TRPC5OSA6NMA1 111 aa9.04□□□□□ -0.96
LDLR-214ENST00000560628 RFXANKO14593 260 aa9.04□□□□□ -0.96
LDLR-214ENST00000560628 RAMP1O60894 148 aa9.04□□□□□ -0.96
LDLR-214ENST00000560628 SNNO75324 88 aaPredicted RBP9.04□□□□□ -0.96
LDLR-214ENST00000560628 HEXAP06865 529 aa9.04□□□□□ -0.96
LDLR-214ENST00000560628 NTF4P34130 210 aa9.04□□□□□ -0.96
LDLR-214ENST00000560628 MAGOHP61326 146 aaKnown RBP9.04□□□□□ -0.96
LDLR-214ENST00000560628 BSPH1Q075Z2 132 aa9.04□□□□□ -0.96
LDLR-214ENST00000560628 DNAJC14Q6Y2X3 702 aaPredicted RBP9.04□□□□□ -0.96
LDLR-214ENST00000560628 GRINAQ7Z429 371 aa9.04□□□□□ -0.96
LDLR-214ENST00000560628 TRIML2Q8N7C3 387 aa9.04□□□□□ -0.96
LDLR-214ENST00000560628 SLC25A43Q8WUT9 341 aaPredicted RBP9.04□□□□□ -0.96
LDLR-214ENST00000560628 MUCL1Q96DR8 90 aa9.04□□□□□ -0.96
LDLR-214ENST00000560628 ZHX1-C8orf76Q96EF9 292 aa9.04□□□□□ -0.96
LDLR-214ENST00000560628 MANSC1Q9H8J5 431 aa9.04□□□□□ -0.96
LDLR-214ENST00000560628 MTHFD2LQ9H903 347 aaPredicted RBP9.04□□□□□ -0.96
LDLR-214ENST00000560628 SLC6A13Q9NSD5 602 aa9.04□□□□□ -0.96
LDLR-214ENST00000560628 ZNF701Q9NV72 531 aaPredicted RBP9.04□□□□□ -0.96
LDLR-214ENST00000560628 LIPT1Q9Y234 373 aa9.04□□□□□ -0.96
LDLR-214ENST00000560628 NOSIPQ9Y314 301 aaKnown RBP9.04□□□□□ -0.96
LDLR-214ENST00000560628 TMED7Q9Y3B3 224 aa9.04□□□□□ -0.96
LDLR-214ENST00000560628 SPIN1Q9Y657 262 aaPredicted RBP9.04□□□□□ -0.96
LDLR-214ENST00000560628 NF1P21359 2839 aa9.04□□□□□ -0.96
LDLR-214ENST00000560628 IGKV3D-15A0A087WSY6 115 aa9.03□□□□□ -0.96
LDLR-214ENST00000560628 TMEM72A0PK05 275 aa9.03□□□□□ -0.96
LDLR-214ENST00000560628 CCT8L1PA6NM43 557 aa9.03□□□□□ -0.96
LDLR-214ENST00000560628 ZNF716A6NP11 495 aa9.03□□□□□ -0.96
LDLR-214ENST00000560628 FAM171A2A8MVW0 826 aa9.03□□□□□ -0.96
LDLR-214ENST00000560628 SLC22A3O75751 556 aa9.03□□□□□ -0.96
LDLR-214ENST00000560628 PMS2P2O95744 297 aa9.03□□□□□ -0.96
LDLR-214ENST00000560628 SOD3P08294 240 aa9.03□□□□□ -0.96
LDLR-214ENST00000560628 IL7RP16871 459 aa9.03□□□□□ -0.96
LDLR-214ENST00000560628 GGT1P19440 569 aa9.03□□□□□ -0.96
LDLR-214ENST00000560628 PTNP21246 168 aa9.03□□□□□ -0.96
LDLR-214ENST00000560628 PCSK6P29122 969 aa9.03□□□□□ -0.96
LDLR-214ENST00000560628 TACR3P29371 465 aa9.03□□□□□ -0.96
LDLR-214ENST00000560628 ANXA11P50995 505 aaKnown RBP9.03□□□□□ -0.96
LDLR-214ENST00000560628 RPS4XP62701 263 aaKnown RBP9.03□□□□□ -0.96
LDLR-214ENST00000560628 FAPQ12884 760 aa9.03□□□□□ -0.96
LDLR-214ENST00000560628 PPA1Q15181 289 aa9.03□□□□□ -0.96
LDLR-214ENST00000560628 ZNF672Q499Z4 452 aaPredicted RBP9.03□□□□□ -0.96
LDLR-214ENST00000560628 SLC9B1Q4ZJI4 515 aa9.03□□□□□ -0.96
LDLR-214ENST00000560628 ATG16L1Q676U5 607 aa9.03□□□□□ -0.96
LDLR-214ENST00000560628 ADAM5Q6NVV9 412 aa9.03□□□□□ -0.96
LDLR-214ENST00000560628 SEZ6L2Q6UXD5 910 aa9.03□□□□□ -0.96
LDLR-214ENST00000560628 LRRC74BQ6ZQY2 392 aa9.03□□□□□ -0.96
LDLR-214ENST00000560628 VRK2Q86Y07 508 aa9.03□□□□□ -0.96
LDLR-214ENST00000560628 ZNF433Q8N7K0 673 aaPredicted RBP9.03□□□□□ -0.96
LDLR-214ENST00000560628 KBTBD8Q8NFY9 601 aa9.03□□□□□ -0.96
LDLR-214ENST00000560628 SMAP2Q8WU79 429 aaPredicted RBP9.03□□□□□ -0.96
LDLR-214ENST00000560628 WDR60Q8WVS4 1066 aa9.03□□□□□ -0.96
LDLR-214ENST00000560628 OIT3Q8WWZ8 545 aa9.03□□□□□ -0.96
LDLR-214ENST00000560628 FBXW5Q969U6 566 aa9.03□□□□□ -0.96
LDLR-214ENST00000560628 USB1Q9BQ65 265 aaKnown RBP9.03□□□□□ -0.96
LDLR-214ENST00000560628 POTEKPQ9BYX7 375 aa9.03□□□□□ -0.96
LDLR-214ENST00000560628 EXOSC3Q9NQT5 275 aaKnown RBP9.03□□□□□ -0.96
LDLR-214ENST00000560628 RLIMQ9NVW2 624 aa9.03□□□□□ -0.96
LDLR-214ENST00000560628 NKIRAS1Q9NYS0 192 aa9.03□□□□□ -0.96
LDLR-214ENST00000560628 EMC3Q9P0I2 261 aa9.03□□□□□ -0.96
LDLR-214ENST00000560628 TMEM181Q9P2C4 612 aa9.03□□□□□ -0.96
LDLR-214ENST00000560628 OSGIN1Q9UJX0 560 aa9.03□□□□□ -0.96
LDLR-214ENST00000560628 HDGFL3Q9Y3E1 203 aa9.03□□□□□ -0.96
LDLR-214ENST00000560628 RAI1Q7Z5J4 1906 aaPredicted RBP9.03□□□□□ -0.96
LDLR-214ENST00000560628 A0A1W2PP18 115 aa9.02□□□□□ -0.97
LDLR-214ENST00000560628 A0A1W2PR80 420 aa9.02□□□□□ -0.97
LDLR-214ENST00000560628 CIB4A0PJX0 185 aa9.02□□□□□ -0.97
LDLR-214ENST00000560628 ZC3H12DA2A288 527 aaKnown RBP9.02□□□□□ -0.97
LDLR-214ENST00000560628 CFAP73A6NFT4 308 aa9.02□□□□□ -0.97
LDLR-214ENST00000560628 SLCO1B7G3V0H7 640 aa9.02□□□□□ -0.97
LDLR-214ENST00000560628 MRPL33O75394 65 aaKnown RBP9.02□□□□□ -0.97
LDLR-214ENST00000560628 RAD51DO75771 328 aa9.02□□□□□ -0.97
LDLR-214ENST00000560628 KRT75O95678 551 aa9.02□□□□□ -0.97
LDLR-214ENST00000560628 IL6P05231 212 aa9.02□□□□□ -0.97
LDLR-214ENST00000560628 DBIP07108 87 aaKnown RBP9.02□□□□□ -0.97
LDLR-214ENST00000560628 GKN3PP0CG01 181 aa9.02□□□□□ -0.97
LDLR-214ENST00000560628 IMPDH2P12268 514 aa9.02□□□□□ -0.97
LDLR-214ENST00000560628 ETFAP13804 333 aa9.02□□□□□ -0.97
LDLR-214ENST00000560628 IDO1P14902 403 aa9.02□□□□□ -0.97
LDLR-214ENST00000560628 PAX1P15863 534 aa9.02□□□□□ -0.97
LDLR-214ENST00000560628 FKBP2P26885 142 aaKnown RBP9.02□□□□□ -0.97
LDLR-214ENST00000560628 CDKN1AP38936 164 aa9.02□□□□□ -0.97
LDLR-214ENST00000560628 CRATP43155 626 aa9.02□□□□□ -0.97
LDLR-214ENST00000560628 MAGEA8P43361 318 aa9.02□□□□□ -0.97
LDLR-214ENST00000560628 HTR3AP46098 478 aa9.02□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms