RNA–Protein interactions for RNA: ENST00000559340.1

LDLR-210, Transcript of low density lipoprotein receptor, humanhuman

TSL 5

Gene LDLR, Length 605 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-210ENST00000559340 TTC33Q6PID6 262 aaPredicted RBP8.34□□□□□ -1.07
LDLR-210ENST00000559340 ESPNLQ6ZVH7 1005 aa8.34□□□□□ -1.07
LDLR-210ENST00000559340 ADGRG3Q86Y34 549 aa8.34□□□□□ -1.07
LDLR-210ENST00000559340 LILRA2Q8N149 483 aa8.34□□□□□ -1.07
LDLR-210ENST00000559340 LINC00471Q8N535 108 aa8.34□□□□□ -1.07
LDLR-210ENST00000559340 PIK3C3Q8NEB9 887 aa8.34□□□□□ -1.07
LDLR-210ENST00000559340 OR10Q1Q8NGQ4 319 aa8.34□□□□□ -1.07
LDLR-210ENST00000559340 ADAMTS16Q8TE57 1224 aa8.34□□□□□ -1.07
LDLR-210ENST00000559340 C3orf49Q96BT1 292 aa8.34□□□□□ -1.07
LDLR-210ENST00000559340 ZHX1-C8orf76Q96EF9 292 aa8.34□□□□□ -1.07
LDLR-210ENST00000559340 SLC41A3Q96GZ6 507 aa8.34□□□□□ -1.07
LDLR-210ENST00000559340 PIP5K1AQ99755 562 aa8.34□□□□□ -1.07
LDLR-210ENST00000559340 AMBRA1Q9C0C7 1298 aa8.34□□□□□ -1.07
LDLR-210ENST00000559340 KRCC1Q9NPI7 259 aaPredicted RBP8.34□□□□□ -1.07
LDLR-210ENST00000559340 CTPS2Q9NRF8 586 aa8.34□□□□□ -1.07
LDLR-210ENST00000559340 CCM2LQ9NUG4 571 aaPredicted RBP8.34□□□□□ -1.07
LDLR-210ENST00000559340 CAMK2AQ9UQM7 478 aa8.34□□□□□ -1.07
LDLR-210ENST00000559340 NTNG1Q9Y2I2 539 aa8.34□□□□□ -1.07
LDLR-210ENST00000559340 SLC6A5Q9Y345 797 aa8.34□□□□□ -1.07
LDLR-210ENST00000559340 HDGFL3Q9Y3E1 203 aa8.34□□□□□ -1.07
LDLR-210ENST00000559340 ZNF337Q9Y3M9 751 aa8.34□□□□□ -1.07
LDLR-210ENST00000559340 PRRC2CQ9Y520 2896 aaKnown RBP8.34□□□□□ -1.07
LDLR-210ENST00000559340 INTS1Q8N201 2190 aaKnown RBP8.34□□□□□ -1.08
LDLR-210ENST00000559340 A0A087WUJ7 227 aa8.33□□□□□ -1.08
LDLR-210ENST00000559340 FIGNL2A6NMB9 653 aa8.33□□□□□ -1.08
LDLR-210ENST00000559340 NPIPA2E9PIF3 369 aa8.33□□□□□ -1.08
LDLR-210ENST00000559340 NPIPA3F8WFD2 350 aa8.33□□□□□ -1.08
LDLR-210ENST00000559340 H0Y3Z8 333 aa8.33□□□□□ -1.08
LDLR-210ENST00000559340 GNGT2O14610 69 aa8.33□□□□□ -1.08
LDLR-210ENST00000559340 HNRNPRO43390 633 aaKnown RBP8.33□□□□□ -1.08
LDLR-210ENST00000559340 ADAM11O75078 769 aa8.33□□□□□ -1.08
LDLR-210ENST00000559340 WDR1O75083 606 aa8.33□□□□□ -1.08
LDLR-210ENST00000559340 AHSA1O95433 338 aa8.33□□□□□ -1.08
LDLR-210ENST00000559340 H1F0P07305 194 aaKnown RBP8.33□□□□□ -1.08
LDLR-210ENST00000559340 TNFRSF1BP20333 461 aa8.33□□□□□ -1.08
LDLR-210ENST00000559340 HTR2AP28223 471 aa8.33□□□□□ -1.08
LDLR-210ENST00000559340 IFNGR2P38484 337 aa8.33□□□□□ -1.08
LDLR-210ENST00000559340 RBM34P42696 430 aaKnown RBP8.33□□□□□ -1.08
LDLR-210ENST00000559340 ARHGDIAP52565 204 aa8.33□□□□□ -1.08
LDLR-210ENST00000559340 CDH12P55289 794 aa8.33□□□□□ -1.08
LDLR-210ENST00000559340 ACTR3P61158 418 aa8.33□□□□□ -1.08
LDLR-210ENST00000559340 CSNK2A1P68400 391 aaPredicted RBP8.33□□□□□ -1.08
LDLR-210ENST00000559340 PLAURQ03405 335 aa8.33□□□□□ -1.08
LDLR-210ENST00000559340 CRYZQ08257 329 aaKnown RBP8.33□□□□□ -1.08
LDLR-210ENST00000559340 PIN1Q13526 163 aaPredicted RBP8.33□□□□□ -1.08
LDLR-210ENST00000559340 SGCBQ16585 318 aa8.33□□□□□ -1.08
LDLR-210ENST00000559340 TMEM176BQ3YBM2 270 aaPredicted RBP8.33□□□□□ -1.08
LDLR-210ENST00000559340 SYT14P1Q58G82 188 aa8.33□□□□□ -1.08
LDLR-210ENST00000559340 COLEC12Q5KU26 742 aa8.33□□□□□ -1.08
LDLR-210ENST00000559340 GTF2IRD2BQ6EKJ0 949 aa8.33□□□□□ -1.08
LDLR-210ENST00000559340 POMZP3Q6PJE2 187 aa8.33□□□□□ -1.08
LDLR-210ENST00000559340 PRICKLE2Q7Z3G6 844 aa8.33□□□□□ -1.08
LDLR-210ENST00000559340 GDF7Q7Z4P5 450 aa8.33□□□□□ -1.08
LDLR-210ENST00000559340 ATG4DQ86TL0 474 aaPredicted RBP8.33□□□□□ -1.08
LDLR-210ENST00000559340 GTF2IRD2Q86UP8 949 aa8.33□□□□□ -1.08
LDLR-210ENST00000559340 COMTD1Q86VU5 262 aa8.33□□□□□ -1.08
LDLR-210ENST00000559340 RBM45Q8IUH3 476 aaKnown RBP8.33□□□□□ -1.08
LDLR-210ENST00000559340 LACC1Q8IV20 430 aa8.33□□□□□ -1.08
LDLR-210ENST00000559340 ADGRG5Q8IZF4 528 aa8.33□□□□□ -1.08
LDLR-210ENST00000559340 CDK20Q8IZL9 346 aa8.33□□□□□ -1.08
LDLR-210ENST00000559340 RNF113BQ8IZP6 322 aaKnown RBP8.33□□□□□ -1.08
LDLR-210ENST00000559340 OFCC1Q8IZS5 231 aa8.33□□□□□ -1.08
LDLR-210ENST00000559340 GALNT11Q8NCW6 608 aa8.33□□□□□ -1.08
LDLR-210ENST00000559340 ATP6V1C2Q8NEY4 427 aa8.33□□□□□ -1.08
LDLR-210ENST00000559340 OR4D11Q8NGI4 311 aa8.33□□□□□ -1.08
LDLR-210ENST00000559340 OR5M1Q8NGP8 315 aa8.33□□□□□ -1.08
LDLR-210ENST00000559340 OR6S1Q8NH40 331 aa8.33□□□□□ -1.08
LDLR-210ENST00000559340 POC1BQ8TC44 478 aa8.33□□□□□ -1.08
LDLR-210ENST00000559340 ZPLD1Q8TCW7 415 aa8.33□□□□□ -1.08
LDLR-210ENST00000559340 PHF10Q8WUB8 498 aaKnown RBP8.33□□□□□ -1.08
LDLR-210ENST00000559340 CANT1Q8WVQ1 401 aa8.33□□□□□ -1.08
LDLR-210ENST00000559340 SMPDL3BQ92485 455 aa8.33□□□□□ -1.08
LDLR-210ENST00000559340 STMN2Q93045 179 aa8.33□□□□□ -1.08
LDLR-210ENST00000559340 UTP4Q969X6 686 aaKnown RBP8.33□□□□□ -1.08
LDLR-210ENST00000559340 DUS3LQ96G46 650 aaKnown RBP8.33□□□□□ -1.08
LDLR-210ENST00000559340 C7orf34Q96L11 122 aa8.33□□□□□ -1.08
LDLR-210ENST00000559340 KLHL15Q96M94 604 aa8.33□□□□□ -1.08
LDLR-210ENST00000559340 TIMP4Q99727 224 aa8.33□□□□□ -1.08
LDLR-210ENST00000559340 TMEM43Q9BTV4 400 aa8.33□□□□□ -1.08
LDLR-210ENST00000559340 CHID1Q9BWS9 393 aa8.33□□□□□ -1.08
LDLR-210ENST00000559340 TAPBPLQ9BX59 468 aa8.33□□□□□ -1.08
LDLR-210ENST00000559340 RSPO3Q9BXY4 272 aaPredicted RBP8.33□□□□□ -1.08
LDLR-210ENST00000559340 SLC19A3Q9BZV2 496 aa8.33□□□□□ -1.08
LDLR-210ENST00000559340 KLHL4Q9C0H6 718 aa8.33□□□□□ -1.08
LDLR-210ENST00000559340 NDUFAF4Q9P032 175 aa8.33□□□□□ -1.08
LDLR-210ENST00000559340 TMCC3Q9ULS5 477 aa8.33□□□□□ -1.08
LDLR-210ENST00000559340 A4GNTQ9UNA3 340 aa8.33□□□□□ -1.08
LDLR-210ENST00000559340 TRAPPC4Q9Y296 219 aa8.33□□□□□ -1.08
LDLR-210ENST00000559340 HRH3Q9Y5N1 445 aa8.33□□□□□ -1.08
LDLR-210ENST00000559340 LIPGQ9Y5X9 500 aa8.33□□□□□ -1.08
LDLR-210ENST00000559340 CFAP46Q8IYW2 2715 aa8.32□□□□□ -1.08
LDLR-210ENST00000559340 KALRNO60229 2985 aa8.32□□□□□ -1.08
LDLR-210ENST00000559340 TMEM72A0PK05 275 aa8.32□□□□□ -1.08
LDLR-210ENST00000559340 B4DXG7 233 aa8.32□□□□□ -1.08
LDLR-210ENST00000559340 hCG_2039718K7EN88 272 aa8.32□□□□□ -1.08
LDLR-210ENST00000559340 DNPH1O43598 174 aa8.32□□□□□ -1.08
LDLR-210ENST00000559340 TPST2O60704 377 aa8.32□□□□□ -1.08
LDLR-210ENST00000559340 FKBP6O75344 327 aa8.32□□□□□ -1.08
LDLR-210ENST00000559340 DEAF1O75398 565 aaPredicted RBP8.32□□□□□ -1.08
LDLR-210ENST00000559340 GADD45GO95257 159 aa8.32□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms