RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 CEP290O15078 2479 aa10.49□□□□□ -0.73
LDLR-208ENST00000558518 SNRNP200O75643 2136 aaKnown RBP10.49□□□□□ -0.73
LDLR-208ENST00000558518 SLC22A23A1A5C7 686 aa10.49□□□□□ -0.73
LDLR-208ENST00000558518 C4orf51C9J302 202 aa10.49□□□□□ -0.73
LDLR-208ENST00000558518 KCNAB3O43448 404 aa10.49□□□□□ -0.73
LDLR-208ENST00000558518 SELENOFO60613 162 aa10.49□□□□□ -0.73
LDLR-208ENST00000558518 CXCL14O95715 111 aa10.49□□□□□ -0.73
LDLR-208ENST00000558518 SULT1A3P0DMM9 295 aa10.49□□□□□ -0.73
LDLR-208ENST00000558518 SULT1A4P0DMN0 295 aa10.49□□□□□ -0.73
LDLR-208ENST00000558518 C4BPBP20851 252 aa10.49□□□□□ -0.73
LDLR-208ENST00000558518 BCL6P41182 706 aa10.49□□□□□ -0.73
LDLR-208ENST00000558518 SQSTM1Q13501 440 aa10.49□□□□□ -0.73
LDLR-208ENST00000558518 TPGS2Q68CL5 300 aa10.49□□□□□ -0.73
LDLR-208ENST00000558518 GID4Q8IVV7 300 aa10.49□□□□□ -0.73
LDLR-208ENST00000558518 ZFP82Q8N141 532 aa10.49□□□□□ -0.73
LDLR-208ENST00000558518 LINC00471Q8N535 108 aa10.49□□□□□ -0.73
LDLR-208ENST00000558518 LHFPL5Q8TAF8 219 aa10.49□□□□□ -0.73
LDLR-208ENST00000558518 C2CD4CQ8TF44 421 aa10.49□□□□□ -0.73
LDLR-208ENST00000558518 TSSK2Q96PF2 358 aa10.49□□□□□ -0.73
LDLR-208ENST00000558518 C11orf49Q9H6J7 331 aa10.49□□□□□ -0.73
LDLR-208ENST00000558518 KRCC1Q9NPI7 259 aaPredicted RBP10.49□□□□□ -0.73
LDLR-208ENST00000558518 ACAD8Q9UKU7 415 aa10.49□□□□□ -0.73
LDLR-208ENST00000558518 MYO15AQ9UKN7 3530 aa10.49□□□□□ -0.73
LDLR-208ENST00000558518 OR5K3A6NET4 321 aa10.49□□□□□ -0.73
LDLR-208ENST00000558518 IGLON5A6NGN9 336 aa10.49□□□□□ -0.73
LDLR-208ENST00000558518 TRIM77I1YAP6 450 aa10.49□□□□□ -0.73
LDLR-208ENST00000558518 SBK2P0C263 348 aa10.49□□□□□ -0.73
LDLR-208ENST00000558518 ZNF3P17036 446 aa10.49□□□□□ -0.73
LDLR-208ENST00000558518 GUCA2AQ02747 115 aa10.49□□□□□ -0.73
LDLR-208ENST00000558518 GPNMBQ14956 572 aa10.49□□□□□ -0.73
LDLR-208ENST00000558518 MAPK14Q16539 360 aa10.49□□□□□ -0.73
LDLR-208ENST00000558518 SCGB2B2Q4G0G5 96 aa10.49□□□□□ -0.73
LDLR-208ENST00000558518 TRMT12Q53H54 448 aaKnown RBP10.49□□□□□ -0.73
LDLR-208ENST00000558518 PLPP4Q5VZY2 271 aa10.49□□□□□ -0.73
LDLR-208ENST00000558518 SLC22A10Q63ZE4 541 aa10.49□□□□□ -0.73
LDLR-208ENST00000558518 WDR88Q6ZMY6 472 aa10.49□□□□□ -0.73
LDLR-208ENST00000558518 COX18Q8N8Q8 333 aa10.49□□□□□ -0.73
LDLR-208ENST00000558518 OR11G2Q8NGC1 345 aa10.49□□□□□ -0.73
LDLR-208ENST00000558518 DUSP19Q8WTR2 217 aa10.49□□□□□ -0.73
LDLR-208ENST00000558518 SGIP1Q9BQI5 828 aa10.49□□□□□ -0.73
LDLR-208ENST00000558518 IL20Q9NYY1 176 aa10.49□□□□□ -0.73
LDLR-208ENST00000558518 FAM74A7A6NL05 159 aa10.48□□□□□ -0.73
LDLR-208ENST00000558518 CCSO14618 274 aa10.48□□□□□ -0.73
LDLR-208ENST00000558518 EMC8O43402 210 aa10.48□□□□□ -0.73
LDLR-208ENST00000558518 FPR3P25089 353 aa10.48□□□□□ -0.73
LDLR-208ENST00000558518 RPS15P62841 145 aaKnown RBP10.48□□□□□ -0.73
LDLR-208ENST00000558518 CSNK1G2P78368 415 aa10.48□□□□□ -0.73
LDLR-208ENST00000558518 SRSF5Q13243 272 aaKnown RBP10.48□□□□□ -0.73
LDLR-208ENST00000558518 FAM74A3Q4VXF1 159 aa10.48□□□□□ -0.73
LDLR-208ENST00000558518 FAM26DQ5JW98 314 aa10.48□□□□□ -0.73
LDLR-208ENST00000558518 MRPL2Q5T653 305 aaKnown RBP10.48□□□□□ -0.73
LDLR-208ENST00000558518 MBOAT2Q6ZWT7 520 aa10.48□□□□□ -0.73
LDLR-208ENST00000558518 RANBP3LQ86VV4 465 aaPredicted RBP10.48□□□□□ -0.73
LDLR-208ENST00000558518 ZNF761Q86XN6 746 aaPredicted RBP10.48□□□□□ -0.73
LDLR-208ENST00000558518 PDZD9Q8IXQ8 264 aa10.48□□□□□ -0.73
LDLR-208ENST00000558518 CPNE2Q96FN4 548 aaPredicted RBP10.48□□□□□ -0.73
LDLR-208ENST00000558518 TOE1Q96GM8 510 aaKnown RBP10.48□□□□□ -0.73
LDLR-208ENST00000558518 TCF7L1Q9HCS4 588 aa10.48□□□□□ -0.73
LDLR-208ENST00000558518 PCDHB16Q9NRJ7 776 aa10.48□□□□□ -0.73
LDLR-208ENST00000558518 CPNE7Q9UBL6 633 aa10.48□□□□□ -0.73
LDLR-208ENST00000558518 ZNF443Q9Y2A4 671 aaPredicted RBP10.48□□□□□ -0.73
LDLR-208ENST00000558518 IER3IP1Q9Y5U9 82 aa10.48□□□□□ -0.73
LDLR-208ENST00000558518 PLXNA3P51805 1871 aa10.48□□□□□ -0.73
LDLR-208ENST00000558518 C4orf47A7E2U8 309 aa10.48□□□□□ -0.73
LDLR-208ENST00000558518 BLOC1S5-TXNDC5H3BN57 136 aa10.48□□□□□ -0.73
LDLR-208ENST00000558518 PYCARD-AS1I3L0S3 204 aa10.48□□□□□ -0.73
LDLR-208ENST00000558518 CDC123O75794 336 aaPredicted RBP10.48□□□□□ -0.73
LDLR-208ENST00000558518 CTSAP10619 480 aa10.48□□□□□ -0.73
LDLR-208ENST00000558518 HIST1H1TP22492 207 aaPredicted RBP10.48□□□□□ -0.73
LDLR-208ENST00000558518 TAF13Q15543 124 aa10.48□□□□□ -0.73
LDLR-208ENST00000558518 OR1Q1Q15612 314 aa10.48□□□□□ -0.73
LDLR-208ENST00000558518 C2orf68Q2NKX9 166 aa10.48□□□□□ -0.73
LDLR-208ENST00000558518 ZNF836Q6ZNA1 936 aa10.48□□□□□ -0.73
LDLR-208ENST00000558518 ADGRG3Q86Y34 549 aa10.48□□□□□ -0.73
LDLR-208ENST00000558518 FAM219AQ8IW50 185 aa10.48□□□□□ -0.73
LDLR-208ENST00000558518 LRRC56Q8IYG6 542 aaPredicted RBP10.48□□□□□ -0.73
LDLR-208ENST00000558518 LINC01555Q8NAE3 123 aa10.48□□□□□ -0.73
LDLR-208ENST00000558518 ZNF511Q8NB15 262 aa10.48□□□□□ -0.73
LDLR-208ENST00000558518 KREMEN2Q8NCW0 462 aa10.48□□□□□ -0.73
LDLR-208ENST00000558518 OR7G2Q8NG99 324 aa10.48□□□□□ -0.73
LDLR-208ENST00000558518 C1QTNF2Q9BXJ5 285 aa10.48□□□□□ -0.73
LDLR-208ENST00000558518 MFFQ9GZY8 342 aa10.48□□□□□ -0.73
LDLR-208ENST00000558518 EXO5Q9H790 373 aa10.48□□□□□ -0.73
LDLR-208ENST00000558518 GPN1Q9HCN4 374 aaPredicted RBP10.48□□□□□ -0.73
LDLR-208ENST00000558518 SRA1Q9HD15 236 aaKnown RBP10.48□□□□□ -0.73
LDLR-208ENST00000558518 MED11Q9P086 117 aa10.48□□□□□ -0.73
LDLR-208ENST00000558518 PCDHGA5Q9Y5G8 931 aa10.48□□□□□ -0.73
LDLR-208ENST00000558518 LRIT2A6NDA9 550 aa10.48□□□□□ -0.73
LDLR-208ENST00000558518 TBC1D3BA6NDS4 549 aa10.48□□□□□ -0.73
LDLR-208ENST00000558518 H7C1C5 153 aa10.48□□□□□ -0.73
LDLR-208ENST00000558518 MAN2B1O00754 1011 aa10.48□□□□□ -0.73
LDLR-208ENST00000558518 ARL6IP5O75915 188 aa10.48□□□□□ -0.73
LDLR-208ENST00000558518 GTF2F2P13984 249 aa10.48□□□□□ -0.73
LDLR-208ENST00000558518 LCN6P62502 163 aa10.48□□□□□ -0.73
LDLR-208ENST00000558518 DUSP5Q16690 384 aa10.48□□□□□ -0.73
LDLR-208ENST00000558518 METTL11BQ5VVY1 283 aa10.48□□□□□ -0.73
LDLR-208ENST00000558518 TMUB2Q71RG4 321 aa10.48□□□□□ -0.73
LDLR-208ENST00000558518 ZNF485Q8NCK3 441 aa10.48□□□□□ -0.73
LDLR-208ENST00000558518 SLAIN1Q8ND83 568 aa10.48□□□□□ -0.73
LDLR-208ENST00000558518 ELP4Q96EB1 424 aa10.48□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 55.4 ms