RNA–Protein interactions for RNA: ENST00000557302.1

SHMT2-228, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-228ENST00000557302 OR2A2Q6IF42 318 aa12.19□□□□□ -0.46
SHMT2-228ENST00000557302 CCDC80Q76M96 950 aa12.19□□□□□ -0.46
SHMT2-228ENST00000557302 COMTD1Q86VU5 262 aa12.19□□□□□ -0.46
SHMT2-228ENST00000557302 ADGRG3Q86Y34 549 aa12.19□□□□□ -0.46
SHMT2-228ENST00000557302 MICU2Q8IYU8 434 aa12.19□□□□□ -0.46
SHMT2-228ENST00000557302 GCNT2Q8N0V5 402 aa12.19□□□□□ -0.46
SHMT2-228ENST00000557302 RASSF5Q8WWW0 418 aa12.19□□□□□ -0.46
SHMT2-228ENST00000557302 INTS12Q96CB8 462 aaKnown RBP12.19□□□□□ -0.46
SHMT2-228ENST00000557302 OR5B2Q96R09 309 aa12.19□□□□□ -0.46
SHMT2-228ENST00000557302 SFXN3Q9BWM7 321 aa12.19□□□□□ -0.46
SHMT2-228ENST00000557302 ADAM19Q9H013 955 aa12.19□□□□□ -0.46
SHMT2-228ENST00000557302 COQ10BQ9H8M1 238 aa12.19□□□□□ -0.46
SHMT2-228ENST00000557302 EVA1AQ9H8M9 152 aa12.19□□□□□ -0.46
SHMT2-228ENST00000557302 KCNJ16Q9NPI9 418 aa12.19□□□□□ -0.46
SHMT2-228ENST00000557302 ARL8BQ9NVJ2 186 aa12.19□□□□□ -0.46
SHMT2-228ENST00000557302 ZNF629Q9UEG4 869 aaPredicted RBP12.19□□□□□ -0.46
SHMT2-228ENST00000557302 TEX15Q9BXT5 2789 aa12.18□□□□□ -0.46
SHMT2-228ENST00000557302 A0A1W2PNR3 127 aa12.18□□□□□ -0.46
SHMT2-228ENST00000557302 ELOVL7A1L3X0 281 aa12.18□□□□□ -0.46
SHMT2-228ENST00000557302 NKX2-6A6NCS4 301 aa12.18□□□□□ -0.46
SHMT2-228ENST00000557302 SYT5O00445 386 aa12.18□□□□□ -0.46
SHMT2-228ENST00000557302 NME4O00746 187 aa12.18□□□□□ -0.46
SHMT2-228ENST00000557302 ZNF208O43345 1280 aa12.18□□□□□ -0.46
SHMT2-228ENST00000557302 IL18BPO95998 194 aa12.18□□□□□ -0.46
SHMT2-228ENST00000557302 IFNA14P01570 189 aa12.18□□□□□ -0.46
SHMT2-228ENST00000557302 C8BP07358 591 aa12.18□□□□□ -0.46
SHMT2-228ENST00000557302 CXCR1P25024 350 aa12.18□□□□□ -0.46
SHMT2-228ENST00000557302 CLK1P49759 484 aaKnown RBP12.18□□□□□ -0.46
SHMT2-228ENST00000557302 MAP2K6P52564 334 aa12.18□□□□□ -0.46
SHMT2-228ENST00000557302 NCALDP61601 193 aa12.18□□□□□ -0.46
SHMT2-228ENST00000557302 FOXF2Q12947 444 aa12.18□□□□□ -0.46
SHMT2-228ENST00000557302 KRT72Q14CN4 511 aa12.18□□□□□ -0.46
SHMT2-228ENST00000557302 DUSP7Q16829 419 aa12.18□□□□□ -0.46
SHMT2-228ENST00000557302 EEF1A1P5Q5VTE0 462 aa12.18□□□□□ -0.46
SHMT2-228ENST00000557302 LIX1LQ8IVB5 337 aa12.18□□□□□ -0.46
SHMT2-228ENST00000557302 FITM2Q8N6M3 262 aa12.18□□□□□ -0.46
SHMT2-228ENST00000557302 BCAS4Q8TDM0 211 aa12.18□□□□□ -0.46
SHMT2-228ENST00000557302 CPNE4Q96A23 557 aaPredicted RBP12.18□□□□□ -0.46
SHMT2-228ENST00000557302 ZNF559Q9BR84 538 aa12.18□□□□□ -0.46
SHMT2-228ENST00000557302 UCK2Q9BZX2 261 aa12.18□□□□□ -0.46
SHMT2-228ENST00000557302 TRIM2Q9C040 744 aa12.18□□□□□ -0.46
SHMT2-228ENST00000557302 RNF122Q9H9V4 155 aa12.18□□□□□ -0.46
SHMT2-228ENST00000557302 SPAG4Q9NPE6 437 aa12.18□□□□□ -0.46
SHMT2-228ENST00000557302 ABCD2Q9UBJ2 740 aa12.18□□□□□ -0.46
SHMT2-228ENST00000557302 RPS6KB2Q9UBS0 482 aa12.18□□□□□ -0.46
SHMT2-228ENST00000557302 TESQ9UGI8 421 aaKnown RBP12.18□□□□□ -0.46
SHMT2-228ENST00000557302 ARHGAP21Q5T5U3 1957 aa12.18□□□□□ -0.46
SHMT2-228ENST00000557302 KIAA1549Q9HCM3 1950 aa12.18□□□□□ -0.46
SHMT2-228ENST00000557302 A0A1W2PNV4 684 aa12.17□□□□□ -0.46
SHMT2-228ENST00000557302 TMEM72A0PK05 275 aa12.17□□□□□ -0.46
SHMT2-228ENST00000557302 AQP8O94778 261 aa12.17□□□□□ -0.46
SHMT2-228ENST00000557302 LGI1O95970 557 aa12.17□□□□□ -0.46
SHMT2-228ENST00000557302 CRHP06850 196 aa12.17□□□□□ -0.46
SHMT2-228ENST00000557302 CD247P20963 164 aa12.17□□□□□ -0.46
SHMT2-228ENST00000557302 KCNJ5P48544 419 aa12.17□□□□□ -0.46
SHMT2-228ENST00000557302 GSK3BP49841 420 aa12.17□□□□□ -0.46
SHMT2-228ENST00000557302 MNAT1P51948 309 aa12.17□□□□□ -0.46
SHMT2-228ENST00000557302 RAC3P60763 192 aa12.17□□□□□ -0.46
SHMT2-228ENST00000557302 CSNK2A1P68400 391 aaPredicted RBP12.17□□□□□ -0.46
SHMT2-228ENST00000557302 ZNF239Q16600 458 aaKnown RBP12.17□□□□□ -0.46
SHMT2-228ENST00000557302 TMPPEQ6ZT21 453 aa12.17□□□□□ -0.46
SHMT2-228ENST00000557302 RANBP3LQ86VV4 465 aaPredicted RBP12.17□□□□□ -0.46
SHMT2-228ENST00000557302 GPR32P1Q8NGA4 272 aa12.17□□□□□ -0.46
SHMT2-228ENST00000557302 OR52E4Q8NGH9 312 aa12.17□□□□□ -0.46
SHMT2-228ENST00000557302 C3orf49Q96BT1 292 aa12.17□□□□□ -0.46
SHMT2-228ENST00000557302 DDIT4LQ96D03 193 aa12.17□□□□□ -0.46
SHMT2-228ENST00000557302 ARHGDIGQ99819 225 aa12.17□□□□□ -0.46
SHMT2-228ENST00000557302 KCTD14Q9BQ13 255 aaPredicted RBP12.17□□□□□ -0.46
SHMT2-228ENST00000557302 SRXN1Q9BYN0 137 aa12.17□□□□□ -0.46
SHMT2-228ENST00000557302 OR11A1Q9GZK7 315 aa12.17□□□□□ -0.46
SHMT2-228ENST00000557302 ALG2Q9H553 416 aa12.17□□□□□ -0.46
SHMT2-228ENST00000557302 CHST11Q9NPF2 352 aa12.17□□□□□ -0.46
SHMT2-228ENST00000557302 GMPR2Q9P2T1 348 aaKnown RBP12.17□□□□□ -0.46
SHMT2-228ENST00000557302 HDGFL3Q9Y3E1 203 aa12.17□□□□□ -0.46
SHMT2-228ENST00000557302 DOCK7Q96N67 2140 aa12.17□□□□□ -0.46
SHMT2-228ENST00000557302 CACNA1CQ13936 2221 aa12.17□□□□□ -0.46
SHMT2-228ENST00000557302 M0R3H8 397 aa12.16□□□□□ -0.46
SHMT2-228ENST00000557302 SULT2B1O00204 365 aa12.16□□□□□ -0.46
SHMT2-228ENST00000557302 GSTA4O15217 222 aa12.16□□□□□ -0.46
SHMT2-228ENST00000557302 PLGP00747 810 aaPredicted RBP12.16□□□□□ -0.46
SHMT2-228ENST00000557302 FESP07332 822 aa12.16□□□□□ -0.46
SHMT2-228ENST00000557302 ENPP1P22413 925 aa12.16□□□□□ -0.46
SHMT2-228ENST00000557302 HTR2AP28223 471 aa12.16□□□□□ -0.46
SHMT2-228ENST00000557302 GRNP28799 593 aaKnown RBP12.16□□□□□ -0.46
SHMT2-228ENST00000557302 KDELR2P33947 212 aa12.16□□□□□ -0.46
SHMT2-228ENST00000557302 DIO1P49895 249 aa12.16□□□□□ -0.46
SHMT2-228ENST00000557302 AGFG1P52594 562 aaKnown RBP12.16□□□□□ -0.46
SHMT2-228ENST00000557302 CRYBA2P53672 197 aa12.16□□□□□ -0.46
SHMT2-228ENST00000557302 MXRA7P84157 204 aa12.16□□□□□ -0.46
SHMT2-228ENST00000557302 MYBPHQ13203 477 aa12.16□□□□□ -0.46
SHMT2-228ENST00000557302 NRF1Q16656 503 aa12.16□□□□□ -0.46
SHMT2-228ENST00000557302 LRRC23Q53EV4 343 aaPredicted RBP12.16□□□□□ -0.46
SHMT2-228ENST00000557302 GTF2IRD2BQ6EKJ0 949 aa12.16□□□□□ -0.46
SHMT2-228ENST00000557302 GTF2IRD2Q86UP8 949 aa12.16□□□□□ -0.46
SHMT2-228ENST00000557302 MCEMP1Q8IX19 187 aa12.16□□□□□ -0.46
SHMT2-228ENST00000557302 LSMEM1Q8N8F7 131 aa12.16□□□□□ -0.46
SHMT2-228ENST00000557302 CNEP1R1Q8N9A8 125 aa12.16□□□□□ -0.46
SHMT2-228ENST00000557302 RELL2Q8NC24 303 aaPredicted RBP12.16□□□□□ -0.46
SHMT2-228ENST00000557302 DNAJA4Q8WW22 397 aaPredicted RBP12.16□□□□□ -0.46
SHMT2-228ENST00000557302 ROBO4Q8WZ75 1007 aa12.16□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms