RNA–Protein interactions for RNA: ENST00000552491.5

LIMA1-212, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 2,652 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-212ENST00000552491 CA10Q9NS85 328 aa5□□□□□ -1.61
LIMA1-212ENST00000552491 ZNF224Q9NZL3 707 aa5□□□□□ -1.61
LIMA1-212ENST00000552491 PIPOXQ9P0Z9 390 aa5□□□□□ -1.61
LIMA1-212ENST00000552491 USP36Q9P275 1121 aaKnown RBP5□□□□□ -1.61
LIMA1-212ENST00000552491 UBQLN2Q9UHD9 624 aa5□□□□□ -1.61
LIMA1-212ENST00000552491 SCP2D1Q9UJQ7 156 aa5□□□□□ -1.61
LIMA1-212ENST00000552491 PPIEQ9UNP9 301 aaKnown RBP5□□□□□ -1.61
LIMA1-212ENST00000552491 PRELID1Q9Y255 219 aa5□□□□□ -1.61
LIMA1-212ENST00000552491 PCDHGA9Q9Y5G4 932 aaKnown RBP5□□□□□ -1.61
LIMA1-212ENST00000552491 SPTBN5Q9NRC6 3674 aaKnown RBP5□□□□□ -1.61
LIMA1-212ENST00000552491 CHD9Q3L8U1 2897 aa5□□□□□ -1.61
LIMA1-212ENST00000552491 CACNA1CQ13936 2221 aa5□□□□□ -1.61
LIMA1-212ENST00000552491 TRAPPC13A5PLN9 417 aa5□□□□□ -1.61
LIMA1-212ENST00000552491 SLC22A31A6NKX4 558 aa5□□□□□ -1.61
LIMA1-212ENST00000552491 DUXAA6NLW8 204 aa5□□□□□ -1.61
LIMA1-212ENST00000552491 IDSB3KWA1 339 aa5□□□□□ -1.61
LIMA1-212ENST00000552491 LRRN3E7EW58 273 aa5□□□□□ -1.61
LIMA1-212ENST00000552491 PRR23D1E9PI22 279 aaPredicted RBP5□□□□□ -1.61
LIMA1-212ENST00000552491 ADAM11O75078 769 aa5□□□□□ -1.61
LIMA1-212ENST00000552491 PPP1R3DO95685 299 aa5□□□□□ -1.61
LIMA1-212ENST00000552491 ASGR2P07307 311 aa5□□□□□ -1.61
LIMA1-212ENST00000552491 ADH1AP07327 375 aa5□□□□□ -1.61
LIMA1-212ENST00000552491 NGFRP08138 427 aa5□□□□□ -1.61
LIMA1-212ENST00000552491 PRR23D2P0DMB1 279 aaPredicted RBP5□□□□□ -1.61
LIMA1-212ENST00000552491 BMP7P18075 431 aa5□□□□□ -1.61
LIMA1-212ENST00000552491 CXCL2P19875 107 aa5□□□□□ -1.61
LIMA1-212ENST00000552491 NT5EP21589 574 aa5□□□□□ -1.61
LIMA1-212ENST00000552491 CAPZA2P47755 286 aa5□□□□□ -1.61
LIMA1-212ENST00000552491 MAP2K6P52564 334 aa5□□□□□ -1.61
LIMA1-212ENST00000552491 BLVRAP53004 296 aa5□□□□□ -1.61
LIMA1-212ENST00000552491 NRG3P56975 720 aa5□□□□□ -1.61
LIMA1-212ENST00000552491 RPS15P62841 145 aaKnown RBP5□□□□□ -1.61
LIMA1-212ENST00000552491 DYRK1AQ13627 763 aa5□□□□□ -1.61
LIMA1-212ENST00000552491 FHL1Q13642 323 aa5□□□□□ -1.61
LIMA1-212ENST00000552491 FGL2Q14314 439 aa5□□□□□ -1.61
LIMA1-212ENST00000552491 ELAVL3Q14576 367 aaKnown RBP5□□□□□ -1.61
LIMA1-212ENST00000552491 ZNF234Q14588 700 aa5□□□□□ -1.61
LIMA1-212ENST00000552491 TCEA2Q15560 299 aa5□□□□□ -1.61
LIMA1-212ENST00000552491 DEFB115Q30KQ5 88 aa5□□□□□ -1.61
LIMA1-212ENST00000552491 TRMT12Q53H54 448 aaKnown RBP5□□□□□ -1.61
LIMA1-212ENST00000552491 GARNL3Q5VVW2 1013 aa5□□□□□ -1.61
LIMA1-212ENST00000552491 PLPP4Q5VZY2 271 aa5□□□□□ -1.61
LIMA1-212ENST00000552491 FAAP20Q6NZ36 180 aa5□□□□□ -1.61
LIMA1-212ENST00000552491 KIAA1324Q6UXG2 1013 aaKnown RBP5□□□□□ -1.61
LIMA1-212ENST00000552491 CHMP1BQ7LBR1 199 aa5□□□□□ -1.61
LIMA1-212ENST00000552491 VN1R4Q7Z5H5 301 aa5□□□□□ -1.61
LIMA1-212ENST00000552491 RNF113BQ8IZP6 322 aaKnown RBP5□□□□□ -1.61
LIMA1-212ENST00000552491 SLC44A3Q8N4M1 653 aa5□□□□□ -1.61
LIMA1-212ENST00000552491 RAB42Q8N4Z0 105 aa5□□□□□ -1.61
LIMA1-212ENST00000552491 OR2L3Q8NG85 312 aa5□□□□□ -1.61
LIMA1-212ENST00000552491 OR52L1Q8NGH7 329 aa5□□□□□ -1.61
LIMA1-212ENST00000552491 RPLP0P6Q8NHW5 317 aa5□□□□□ -1.61
LIMA1-212ENST00000552491 SMIM4Q8WVI0 70 aa5□□□□□ -1.61
LIMA1-212ENST00000552491 OTUB2Q96DC9 234 aa5□□□□□ -1.61
LIMA1-212ENST00000552491 PELI1Q96FA3 418 aa5□□□□□ -1.61
LIMA1-212ENST00000552491 DEFB118Q96PH6 123 aa5□□□□□ -1.61
LIMA1-212ENST00000552491 OR14A2Q96R54 314 aa5□□□□□ -1.61
LIMA1-212ENST00000552491 PDCD1LG2Q9BQ51 273 aa5□□□□□ -1.61
LIMA1-212ENST00000552491 SEC22CQ9BRL7 303 aa5□□□□□ -1.61
LIMA1-212ENST00000552491 OR10A4Q9H209 315 aa5□□□□□ -1.61
LIMA1-212ENST00000552491 LRRN3Q9H3W5 708 aa5□□□□□ -1.61
LIMA1-212ENST00000552491 EMC3Q9P0I2 261 aa5□□□□□ -1.61
LIMA1-212ENST00000552491 CXXC1Q9P0U4 656 aaPredicted RBP5□□□□□ -1.61
LIMA1-212ENST00000552491 ABRACLQ9P1F3 81 aa5□□□□□ -1.61
LIMA1-212ENST00000552491 RCE1Q9Y256 329 aa5□□□□□ -1.61
LIMA1-212ENST00000552491 FKBP7Q9Y680 259 aa5□□□□□ -1.61
LIMA1-212ENST00000552491 KCNMB2Q9Y691 235 aa5□□□□□ -1.61
LIMA1-212ENST00000552491 MPDZO75970 2070 aa5□□□□□ -1.61
LIMA1-212ENST00000552491 MYO15AQ9UKN7 3530 aa5□□□□□ -1.61
LIMA1-212ENST00000552491 HEATR5AQ86XA9 2040 aa5□□□□□ -1.61
LIMA1-212ENST00000552491 TRAV1-2A0A0B4J238 106 aa5□□□□□ -1.61
LIMA1-212ENST00000552491 EDDM13A0A1B0GTR0 161 aa5□□□□□ -1.61
LIMA1-212ENST00000552491 A0A1W2PPL8 197 aa5□□□□□ -1.61
LIMA1-212ENST00000552491 FAM86C2PA6NEL3 165 aa5□□□□□ -1.61
LIMA1-212ENST00000552491 CTDSPLO15194 276 aa5□□□□□ -1.61
LIMA1-212ENST00000552491 MID1O15344 667 aa5□□□□□ -1.61
LIMA1-212ENST00000552491 PIN1P1O15428 100 aa5□□□□□ -1.61
LIMA1-212ENST00000552491 GSTZ1O43708 216 aaPredicted RBP5□□□□□ -1.61
LIMA1-212ENST00000552491 PTP4A3O75365 173 aa5□□□□□ -1.61
LIMA1-212ENST00000552491 HOXD4P09016 255 aaPredicted RBP5□□□□□ -1.61
LIMA1-212ENST00000552491 ACRP10323 421 aa5□□□□□ -1.61
LIMA1-212ENST00000552491 SAGP10523 405 aaPredicted RBP5□□□□□ -1.61
LIMA1-212ENST00000552491 EPCAMP16422 314 aa5□□□□□ -1.61
LIMA1-212ENST00000552491 NAT1P18440 290 aa5□□□□□ -1.61
LIMA1-212ENST00000552491 DRD3P35462 400 aa5□□□□□ -1.61
LIMA1-212ENST00000552491 PSMB10P40306 273 aa5□□□□□ -1.61
LIMA1-212ENST00000552491 RAD52P43351 418 aa5□□□□□ -1.61
LIMA1-212ENST00000552491 CCR9P51686 369 aa5□□□□□ -1.61
LIMA1-212ENST00000552491 CLDN12P56749 244 aa5□□□□□ -1.61
LIMA1-212ENST00000552491 RAB14P61106 215 aa5□□□□□ -1.61
LIMA1-212ENST00000552491 DUSP8Q13202 625 aa5□□□□□ -1.61
LIMA1-212ENST00000552491 ARHGAP11BQ3KRB8 267 aa5□□□□□ -1.61
LIMA1-212ENST00000552491 FAM199XQ6PEV8 388 aaPredicted RBP5□□□□□ -1.61
LIMA1-212ENST00000552491 BAIAP2L2Q6UXY1 529 aa5□□□□□ -1.61
LIMA1-212ENST00000552491 ZAR1Q86SH2 424 aa5□□□□□ -1.61
LIMA1-212ENST00000552491 GPAT4Q86UL3 456 aa5□□□□□ -1.61
LIMA1-212ENST00000552491 NRROSQ86YC3 692 aa5□□□□□ -1.61
LIMA1-212ENST00000552491 SERPINA12Q8IW75 414 aa5□□□□□ -1.61
LIMA1-212ENST00000552491 TMEFF1Q8IYR6 380 aa5□□□□□ -1.61
LIMA1-212ENST00000552491 OR2L8Q8NGY9 312 aa5□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms