RNA–Protein interactions for RNA: ENST00000546588.1

VPS29-203, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 1,059 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-203ENST00000546588 UQCRBP14927 111 aa7.72□□□□□ -1.17
VPS29-203ENST00000546588 STAT5AP42229 794 aa7.72□□□□□ -1.17
VPS29-203ENST00000546588 ZNF136P52737 540 aa7.72□□□□□ -1.17
VPS29-203ENST00000546588 SLC16A1P53985 500 aa7.72□□□□□ -1.17
VPS29-203ENST00000546588 ATP12AP54707 1039 aa7.72□□□□□ -1.17
VPS29-203ENST00000546588 EMP2P54851 167 aa7.72□□□□□ -1.17
VPS29-203ENST00000546588 DLX5P56178 289 aa7.72□□□□□ -1.17
VPS29-203ENST00000546588 SSTP61278 116 aa7.72□□□□□ -1.17
VPS29-203ENST00000546588 RPP38P78345 283 aaKnown RBP7.72□□□□□ -1.17
VPS29-203ENST00000546588 LARS2Q15031 903 aaKnown RBP7.72□□□□□ -1.17
VPS29-203ENST00000546588 PPA1Q15181 289 aa7.72□□□□□ -1.17
VPS29-203ENST00000546588 MAPK14Q16539 360 aa7.72□□□□□ -1.17
VPS29-203ENST00000546588 ZNF311Q5JNZ3 666 aa7.72□□□□□ -1.17
VPS29-203ENST00000546588 COLEC12Q5KU26 742 aa7.72□□□□□ -1.17
VPS29-203ENST00000546588 PLAG1Q6DJT9 500 aa7.72□□□□□ -1.17
VPS29-203ENST00000546588 DHRS13Q6UX07 377 aa7.72□□□□□ -1.17
VPS29-203ENST00000546588 UNQ6494/PRO21346Q6UXR6 183 aa7.72□□□□□ -1.17
VPS29-203ENST00000546588 ZNF836Q6ZNA1 936 aa7.72□□□□□ -1.17
VPS29-203ENST00000546588 ZBTB49Q6ZSB9 765 aa7.72□□□□□ -1.17
VPS29-203ENST00000546588 ASCL5Q7RTU5 278 aa7.72□□□□□ -1.17
VPS29-203ENST00000546588 TIPARPQ7Z3E1 657 aaKnown RBP7.72□□□□□ -1.17
VPS29-203ENST00000546588 TMEM179BQ7Z7N9 219 aa7.72□□□□□ -1.17
VPS29-203ENST00000546588 CARM1Q86X55 608 aa7.72□□□□□ -1.17
VPS29-203ENST00000546588 CHERPQ8IWX8 916 aaKnown RBP7.72□□□□□ -1.17
VPS29-203ENST00000546588 PARP8Q8N3A8 854 aa7.72□□□□□ -1.17
VPS29-203ENST00000546588 MARVELD2Q8N4S9 558 aa7.72□□□□□ -1.17
VPS29-203ENST00000546588 CBR4Q8N4T8 237 aa7.72□□□□□ -1.17
VPS29-203ENST00000546588 LINC00471Q8N535 108 aa7.72□□□□□ -1.17
VPS29-203ENST00000546588 SLC15A4Q8N697 577 aa7.72□□□□□ -1.17
VPS29-203ENST00000546588 ZNF321PQ8N8H1 164 aa7.72□□□□□ -1.17
VPS29-203ENST00000546588 OR6T1Q8NGN1 323 aa7.72□□□□□ -1.17
VPS29-203ENST00000546588 OR52P1PQ8NH57 321 aa7.72□□□□□ -1.17
VPS29-203ENST00000546588 M1APQ8TC57 530 aa7.72□□□□□ -1.17
VPS29-203ENST00000546588 GPR151Q8TDV0 419 aa7.72□□□□□ -1.17
VPS29-203ENST00000546588 HDAC2Q92769 488 aaKnown RBP7.72□□□□□ -1.17
VPS29-203ENST00000546588 PROX1Q92786 737 aa7.72□□□□□ -1.17
VPS29-203ENST00000546588 FOXRED1Q96CU9 486 aaPredicted RBP7.72□□□□□ -1.17
VPS29-203ENST00000546588 ZG16BQ96DA0 208 aa7.72□□□□□ -1.17
VPS29-203ENST00000546588 TPD52L3Q96J77 140 aa7.72□□□□□ -1.17
VPS29-203ENST00000546588 MAGED4Q96JG8 741 aa7.72□□□□□ -1.17
VPS29-203ENST00000546588 CCNL2Q96S94 520 aaPredicted RBP7.72□□□□□ -1.17
VPS29-203ENST00000546588 LPAR4Q99677 370 aa7.72□□□□□ -1.17
VPS29-203ENST00000546588 RBM4BQ9BQ04 359 aaKnown RBP7.72□□□□□ -1.17
VPS29-203ENST00000546588 CRB3Q9BUF7 120 aa7.72□□□□□ -1.17
VPS29-203ENST00000546588 ZNF426Q9BUY5 554 aa7.72□□□□□ -1.17
VPS29-203ENST00000546588 CNPPD1Q9BV87 410 aa7.72□□□□□ -1.17
VPS29-203ENST00000546588 RBM4Q9BWF3 364 aaKnown RBP7.72□□□□□ -1.17
VPS29-203ENST00000546588 OSBPL11Q9BXB4 747 aa7.72□□□□□ -1.17
VPS29-203ENST00000546588 GPR87Q9BY21 358 aa7.72□□□□□ -1.17
VPS29-203ENST00000546588 GABARAPL3Q9BY60 117 aa7.72□□□□□ -1.17
VPS29-203ENST00000546588 HOXD1Q9GZZ0 328 aa7.72□□□□□ -1.17
VPS29-203ENST00000546588 NXF5Q9H1B4 397 aaKnown RBP7.72□□□□□ -1.17
VPS29-203ENST00000546588 WNT5BQ9H1J7 359 aa7.72□□□□□ -1.17
VPS29-203ENST00000546588 SEMA6AQ9H2E6 1030 aa7.72□□□□□ -1.17
VPS29-203ENST00000546588 COQ10BQ9H8M1 238 aa7.72□□□□□ -1.17
VPS29-203ENST00000546588 REEP1Q9H902 201 aa7.72□□□□□ -1.17
VPS29-203ENST00000546588 MMP25Q9NPA2 562 aa7.72□□□□□ -1.17
VPS29-203ENST00000546588 MAN2C1Q9NTJ4 1040 aa7.72□□□□□ -1.17
VPS29-203ENST00000546588 COPS7AQ9UBW8 275 aa7.72□□□□□ -1.17
VPS29-203ENST00000546588 MRTO4Q9UKD2 239 aaKnown RBP7.72□□□□□ -1.17
VPS29-203ENST00000546588 HS3ST3B1Q9Y662 390 aa7.72□□□□□ -1.17
VPS29-203ENST00000546588 V9GYQ6 96 aa7.72□□□□□ -1.17
VPS29-203ENST00000546588 PCNX3Q9H6A9 2034 aa7.71□□□□□ -1.17
VPS29-203ENST00000546588 CFAP54Q96N23 3096 aa7.71□□□□□ -1.17
VPS29-203ENST00000546588 MPDZO75970 2070 aa7.71□□□□□ -1.17
VPS29-203ENST00000546588 OR6C70A6NIJ9 312 aa7.71□□□□□ -1.18
VPS29-203ENST00000546588 NOTOA8MTQ0 251 aa7.71□□□□□ -1.18
VPS29-203ENST00000546588 G3V2T6 193 aa7.71□□□□□ -1.18
VPS29-203ENST00000546588 hCG_2039718K7EN88 272 aa7.71□□□□□ -1.18
VPS29-203ENST00000546588 SLC16A6O15403 523 aa7.71□□□□□ -1.18
VPS29-203ENST00000546588 TPST2O60704 377 aa7.71□□□□□ -1.18
VPS29-203ENST00000546588 MT-ND1P03886 318 aa7.71□□□□□ -1.18
VPS29-203ENST00000546588 RNASE1P07998 156 aaKnown RBP7.71□□□□□ -1.18
VPS29-203ENST00000546588 ZNF23P17027 643 aa7.71□□□□□ -1.18
VPS29-203ENST00000546588 TBXA2RP21731 343 aa7.71□□□□□ -1.18
VPS29-203ENST00000546588 ELAVL4P26378 380 aaKnown RBP7.71□□□□□ -1.18
VPS29-203ENST00000546588 RRM2P31350 389 aa7.71□□□□□ -1.18
VPS29-203ENST00000546588 GABRA3P34903 492 aa7.71□□□□□ -1.18
VPS29-203ENST00000546588 PGDP52209 483 aa7.71□□□□□ -1.18
VPS29-203ENST00000546588 SMIM11AP58511 58 aa7.71□□□□□ -1.18
VPS29-203ENST00000546588 ADARB1P78563 741 aaKnown RBP7.71□□□□□ -1.18
VPS29-203ENST00000546588 IL1RL1Q01638 556 aa7.71□□□□□ -1.18
VPS29-203ENST00000546588 ROM1Q03395 351 aa7.71□□□□□ -1.18
VPS29-203ENST00000546588 CHAF1BQ13112 559 aa7.71□□□□□ -1.18
VPS29-203ENST00000546588 EXT1Q16394 746 aa7.71□□□□□ -1.18
VPS29-203ENST00000546588 DECR1Q16698 335 aa7.71□□□□□ -1.18
VPS29-203ENST00000546588 MICAQ29983 383 aa7.71□□□□□ -1.18
VPS29-203ENST00000546588 SLC36A3Q495N2 470 aa7.71□□□□□ -1.18
VPS29-203ENST00000546588 H3F3CQ6NXT2 135 aa7.71□□□□□ -1.18
VPS29-203ENST00000546588 PAPD4Q6PIY7 484 aaKnown RBP7.71□□□□□ -1.18
VPS29-203ENST00000546588 TBPL2Q6SJ96 375 aa7.71□□□□□ -1.18
VPS29-203ENST00000546588 CD300LDQ6UXZ3 194 aa7.71□□□□□ -1.18
VPS29-203ENST00000546588 B3GNT6Q6ZMB0 384 aa7.71□□□□□ -1.18
VPS29-203ENST00000546588 SLC29A4Q7RTT9 530 aa7.71□□□□□ -1.18
VPS29-203ENST00000546588 GALNTL5Q7Z4T8 443 aa7.71□□□□□ -1.18
VPS29-203ENST00000546588 WDR53Q7Z5U6 358 aaPredicted RBP7.71□□□□□ -1.18
VPS29-203ENST00000546588 LACC1Q8IV20 430 aa7.71□□□□□ -1.18
VPS29-203ENST00000546588 DND1Q8IYX4 353 aaKnown RBP7.71□□□□□ -1.18
VPS29-203ENST00000546588 SLC34A3Q8N130 599 aa7.71□□□□□ -1.18
VPS29-203ENST00000546588 GALNT15Q8N3T1 639 aa7.71□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms