RNA–Protein interactions for RNA: ENST00000544547.5

LIMS1-215, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 4,461 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-215ENST00000544547 ARFRP1Q13795 201 aa13.27□□□□□ -0.29
LIMS1-215ENST00000544547 GFOD2Q3B7J2 385 aa13.27□□□□□ -0.29
LIMS1-215ENST00000544547 ENTPD8Q5MY95 495 aa13.27□□□□□ -0.29
LIMS1-215ENST00000544547 CD163Q86VB7 1156 aa13.27□□□□□ -0.29
LIMS1-215ENST00000544547 OR4E2Q8NGC2 313 aa13.27□□□□□ -0.29
LIMS1-215ENST00000544547 ARSGQ96EG1 525 aa13.27□□□□□ -0.29
LIMS1-215ENST00000544547 C16orf58Q96GQ5 468 aa13.27□□□□□ -0.29
LIMS1-215ENST00000544547 CNN2Q99439 309 aaKnown RBP13.27□□□□□ -0.29
LIMS1-215ENST00000544547 CMKLR1Q99788 373 aa13.27□□□□□ -0.29
LIMS1-215ENST00000544547 TBL1XR1Q9BZK7 514 aa13.27□□□□□ -0.29
LIMS1-215ENST00000544547 ZNF700Q9H0M5 742 aa13.27□□□□□ -0.29
LIMS1-215ENST00000544547 C11orf49Q9H6J7 331 aa13.27□□□□□ -0.29
LIMS1-215ENST00000544547 MYNNQ9NPC7 610 aa13.27□□□□□ -0.29
LIMS1-215ENST00000544547 LHX3Q9UBR4 397 aa13.27□□□□□ -0.29
LIMS1-215ENST00000544547 SOD2P04179 222 aa13.27□□□□□ -0.29
LIMS1-215ENST00000544547 PTBP1P26599 531 aaKnown RBP eCLIP13.27□□□□□ -0.291e-7■■■■□ 23.2
LIMS1-215ENST00000544547 TMEM205Q6UW68 189 aa13.27□□□□□ -0.29
LIMS1-215ENST00000544547 TMEM99Q8N816 258 aa13.27□□□□□ -0.29
LIMS1-215ENST00000544547 TSTD1Q8NFU3 115 aa13.27□□□□□ -0.29
LIMS1-215ENST00000544547 OR1J4Q8NGS1 313 aa13.27□□□□□ -0.29
LIMS1-215ENST00000544547 WBP2Q969T9 261 aa13.27□□□□□ -0.29
LIMS1-215ENST00000544547 TBC1D20Q96BZ9 403 aa13.27□□□□□ -0.29
LIMS1-215ENST00000544547 SLC25A36Q96CQ1 311 aa13.27□□□□□ -0.29
LIMS1-215ENST00000544547 HS6ST2Q96MM7 605 aa13.27□□□□□ -0.29
LIMS1-215ENST00000544547 VRK1Q99986 396 aaPredicted RBP13.27□□□□□ -0.29
LIMS1-215ENST00000544547 KLK11Q9UBX7 282 aa13.27□□□□□ -0.29
LIMS1-215ENST00000544547 KIF25Q9UIL4 384 aa13.27□□□□□ -0.29
LIMS1-215ENST00000544547 LAMP5Q9UJQ1 280 aa13.27□□□□□ -0.29
LIMS1-215ENST00000544547 ELF5Q9UKW6 265 aaPredicted RBP13.27□□□□□ -0.29
LIMS1-215ENST00000544547 CAMK2AQ9UQM7 478 aa13.27□□□□□ -0.29
LIMS1-215ENST00000544547 SPTBP11277 2137 aa13.26□□□□□ -0.29
LIMS1-215ENST00000544547 A0A1W2PQ45 241 aaPredicted RBP13.26□□□□□ -0.29
LIMS1-215ENST00000544547 A0A1W2PQY0 241 aa13.26□□□□□ -0.29
LIMS1-215ENST00000544547 OR6C65A6NJZ3 312 aa13.26□□□□□ -0.29
LIMS1-215ENST00000544547 CDC123O75794 336 aaPredicted RBP13.26□□□□□ -0.29
LIMS1-215ENST00000544547 WNT3P56703 355 aa13.26□□□□□ -0.29
LIMS1-215ENST00000544547 RTN4RL1Q86UN2 441 aaPredicted RBP13.26□□□□□ -0.29
LIMS1-215ENST00000544547 ZNF584Q8IVC4 421 aa13.26□□□□□ -0.29
LIMS1-215ENST00000544547 CAMKVQ8NCB2 501 aa13.26□□□□□ -0.29
LIMS1-215ENST00000544547 STEAP2Q8NFT2 490 aa13.26□□□□□ -0.29
LIMS1-215ENST00000544547 C10orf90Q96M02 699 aa13.26□□□□□ -0.29
LIMS1-215ENST00000544547 PLA2G12AQ9BZM1 189 aa13.26□□□□□ -0.29
LIMS1-215ENST00000544547 DNAJC13O75165 2243 aa13.26□□□□□ -0.29
LIMS1-215ENST00000544547 CKAP5Q14008 2032 aa13.26□□□□□ -0.29
LIMS1-215ENST00000544547 EDDM13A0A1B0GTR0 161 aa13.26□□□□□ -0.29
LIMS1-215ENST00000544547 H0YIV9 168 aa13.26□□□□□ -0.29
LIMS1-215ENST00000544547 CYBAP13498 195 aa13.26□□□□□ -0.29
LIMS1-215ENST00000544547 GLULP15104 373 aa13.26□□□□□ -0.29
LIMS1-215ENST00000544547 SLC6A1P30531 599 aa13.26□□□□□ -0.29
LIMS1-215ENST00000544547 CD79BP40259 229 aa13.26□□□□□ -0.29
LIMS1-215ENST00000544547 PBX2P40425 430 aa13.26□□□□□ -0.29
LIMS1-215ENST00000544547 MC3RP41968 323 aa13.26□□□□□ -0.29
LIMS1-215ENST00000544547 SELENOPP49908 381 aa13.26□□□□□ -0.29
LIMS1-215ENST00000544547 PUS10Q3MIT2 529 aaKnown RBP13.26□□□□□ -0.29
LIMS1-215ENST00000544547 ULK3Q6PHR2 472 aa13.26□□□□□ -0.29
LIMS1-215ENST00000544547 MFSD8Q8NHS3 518 aa13.26□□□□□ -0.29
LIMS1-215ENST00000544547 WFDC5Q8TCV5 224 aa13.26□□□□□ -0.29
LIMS1-215ENST00000544547 IGSF21Q96ID5 467 aa13.26□□□□□ -0.29
LIMS1-215ENST00000544547 HINT3Q9NQE9 182 aaKnown RBP13.26□□□□□ -0.29
LIMS1-215ENST00000544547 LEFTY2O00292 366 aa13.26□□□□□ -0.29
LIMS1-215ENST00000544547 LGI1O95970 557 aa13.26□□□□□ -0.29
LIMS1-215ENST00000544547 LPLP06858 475 aa13.26□□□□□ -0.29
LIMS1-215ENST00000544547 MAPK3P27361 379 aaPredicted RBP13.26□□□□□ -0.29
LIMS1-215ENST00000544547 IMPA1P29218 277 aa13.26□□□□□ -0.29
LIMS1-215ENST00000544547 MRPL19P49406 292 aaKnown RBP13.26□□□□□ -0.29
LIMS1-215ENST00000544547 ZNF585AQ6P3V2 769 aa13.26□□□□□ -0.29
LIMS1-215ENST00000544547 FATE1Q969F0 183 aa13.26□□□□□ -0.29
LIMS1-215ENST00000544547 CENPMQ9NSP4 180 aa13.26□□□□□ -0.29
LIMS1-215ENST00000544547 RPH3AQ9Y2J0 694 aaPredicted RBP13.26□□□□□ -0.29
LIMS1-215ENST00000544547 SLC6A5Q9Y345 797 aa13.26□□□□□ -0.29
LIMS1-215ENST00000544547 WNK3Q9BYP7 1800 aa13.26□□□□□ -0.29
LIMS1-215ENST00000544547 LY75O60449 1722 aa13.26□□□□□ -0.29
LIMS1-215ENST00000544547 TRBV5-3A0A0A0MS03 114 aa13.25□□□□□ -0.29
LIMS1-215ENST00000544547 CCSO14618 274 aa13.25□□□□□ -0.29
LIMS1-215ENST00000544547 CCL5P13501 91 aa13.25□□□□□ -0.29
LIMS1-215ENST00000544547 HOXB2P14652 356 aa13.25□□□□□ -0.29
LIMS1-215ENST00000544547 RGS19P49795 217 aa13.25□□□□□ -0.29
LIMS1-215ENST00000544547 CAPZA1P52907 286 aa13.25□□□□□ -0.29
LIMS1-215ENST00000544547 HCCSP53701 268 aa13.25□□□□□ -0.29
LIMS1-215ENST00000544547 CCNJQ5T5M9 372 aa13.25□□□□□ -0.29
LIMS1-215ENST00000544547 ZNF529Q6P280 563 aa13.25□□□□□ -0.29
LIMS1-215ENST00000544547 ZNF101Q8IZC7 436 aa13.25□□□□□ -0.29
LIMS1-215ENST00000544547 ZFPM2Q8WW38 1151 aa13.25□□□□□ -0.29
LIMS1-215ENST00000544547 NR4A3Q92570 626 aa13.25□□□□□ -0.29
LIMS1-215ENST00000544547 MARC2Q969Z3 335 aa13.25□□□□□ -0.29
LIMS1-215ENST00000544547 DZANK1Q9NVP4 752 aa13.25□□□□□ -0.29
LIMS1-215ENST00000544547 NTNG1Q9Y2I2 539 aa13.25□□□□□ -0.29
LIMS1-215ENST00000544547 THSD7AQ9UPZ6 1657 aa13.25□□□□□ -0.29
LIMS1-215ENST00000544547 A0A0B4J2A0 478 aa13.25□□□□□ -0.29
LIMS1-215ENST00000544547 PRKRAO75569 313 aaKnown RBP13.25□□□□□ -0.29
LIMS1-215ENST00000544547 RPS27AP62979 156 aaKnown RBP13.25□□□□□ -0.29
LIMS1-215ENST00000544547 UBA52P62987 128 aaKnown RBP13.25□□□□□ -0.29
LIMS1-215ENST00000544547 RNASE10Q5GAN6 216 aaKnown RBP13.25□□□□□ -0.29
LIMS1-215ENST00000544547 FBXO42Q6P3S6 717 aa13.25□□□□□ -0.29
LIMS1-215ENST00000544547 C17orf99Q6UX52 265 aa13.25□□□□□ -0.29
LIMS1-215ENST00000544547 FAM122BQ7Z309 247 aa13.25□□□□□ -0.29
LIMS1-215ENST00000544547 NKAIN4Q8IVV8 208 aa13.25□□□□□ -0.29
LIMS1-215ENST00000544547 MED18Q9BUE0 208 aa13.25□□□□□ -0.29
LIMS1-215ENST00000544547 SLC38A1Q9H2H9 487 aa13.25□□□□□ -0.29
LIMS1-215ENST00000544547 FN3KQ9H479 309 aa13.25□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms