RNA–Protein interactions for RNA: ENST00000537706.5

USP28-205, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 1,900 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-205ENST00000537706 SELENBP1Q13228 472 aa7.9□□□□□ -1.14
USP28-205ENST00000537706 GRAMD1BQ3KR37 738 aa7.9□□□□□ -1.14
USP28-205ENST00000537706 KLHL22Q53GT1 634 aa7.9□□□□□ -1.14
USP28-205ENST00000537706 C3orf62Q6ZUJ4 267 aa7.9□□□□□ -1.14
USP28-205ENST00000537706 SGCDQ92629 289 aa7.9□□□□□ -1.14
USP28-205ENST00000537706 CERS2Q96G23 380 aa7.9□□□□□ -1.14
USP28-205ENST00000537706 C1orf147Q96MC9 270 aaPredicted RBP7.9□□□□□ -1.14
USP28-205ENST00000537706 NAT9Q9BTE0 207 aa7.9□□□□□ -1.14
USP28-205ENST00000537706 COQ10BQ9H8M1 238 aa7.9□□□□□ -1.14
USP28-205ENST00000537706 KCNK9Q9NPC2 374 aa7.9□□□□□ -1.14
USP28-205ENST00000537706 ZNF275Q9NSD4 429 aaPredicted RBP7.9□□□□□ -1.14
USP28-205ENST00000537706 REV1Q9UBZ9 1251 aa7.9□□□□□ -1.14
USP28-205ENST00000537706 IGHV1-18A0A0C4DH31 117 aa7.9□□□□□ -1.15
USP28-205ENST00000537706 M0R233 179 aa7.9□□□□□ -1.15
USP28-205ENST00000537706 SYNGR3O43761 229 aa7.9□□□□□ -1.15
USP28-205ENST00000537706 PLOD3O60568 738 aa7.9□□□□□ -1.15
USP28-205ENST00000537706 UGDHO60701 494 aa7.9□□□□□ -1.15
USP28-205ENST00000537706 ITGA5P08648 1049 aa7.9□□□□□ -1.15
USP28-205ENST00000537706 SELEP16581 610 aa7.9□□□□□ -1.15
USP28-205ENST00000537706 PSG6Q00889 435 aa7.9□□□□□ -1.15
USP28-205ENST00000537706 COL10A1Q03692 680 aa7.9□□□□□ -1.15
USP28-205ENST00000537706 MPP2Q14168 576 aa7.9□□□□□ -1.15
USP28-205ENST00000537706 ELFN2Q5R3F8 820 aa7.9□□□□□ -1.15
USP28-205ENST00000537706 C9orf135Q5VTT2 229 aa7.9□□□□□ -1.15
USP28-205ENST00000537706 C11orf87Q6NUJ2 197 aa7.9□□□□□ -1.15
USP28-205ENST00000537706 C6orf89Q6UWU4 347 aa7.9□□□□□ -1.15
USP28-205ENST00000537706 ABHD12BQ7Z5M8 362 aaPredicted RBP7.9□□□□□ -1.15
USP28-205ENST00000537706 IGDCC3Q8IVU1 814 aa7.9□□□□□ -1.15
USP28-205ENST00000537706 LRRC34Q8IZ02 419 aa7.9□□□□□ -1.15
USP28-205ENST00000537706 AGGF1Q8N302 714 aaeCLIP7.9□□□□□ -1.15
USP28-205ENST00000537706 ANKRD42Q8N9B4 389 aa7.9□□□□□ -1.15
USP28-205ENST00000537706 OR9A2Q8NGT5 310 aa7.9□□□□□ -1.15
USP28-205ENST00000537706 FBXO27Q8NI29 283 aa7.9□□□□□ -1.15
USP28-205ENST00000537706 MGARPQ8TDB4 240 aa7.9□□□□□ -1.15
USP28-205ENST00000537706 MZB1Q8WU39 189 aa7.9□□□□□ -1.15
USP28-205ENST00000537706 DCAKDQ8WVC6 231 aa7.9□□□□□ -1.15
USP28-205ENST00000537706 SH3YL1Q96HL8 342 aaPredicted RBP7.9□□□□□ -1.15
USP28-205ENST00000537706 MAGEB18Q96M61 343 aa7.9□□□□□ -1.15
USP28-205ENST00000537706 PARPBPQ9NWS1 579 aa7.9□□□□□ -1.15
USP28-205ENST00000537706 NUDT4Q9NZJ9 180 aa7.9□□□□□ -1.15
USP28-205ENST00000537706 OPN4Q9UHM6 478 aa7.9□□□□□ -1.15
USP28-205ENST00000537706 CMAHPQ9Y471 501 aa7.9□□□□□ -1.15
USP28-205ENST00000537706 RNF114Q9Y508 228 aa7.9□□□□□ -1.15
USP28-205ENST00000537706 GPC6Q9Y625 555 aaPredicted RBP7.9□□□□□ -1.15
USP28-205ENST00000537706 ARFGEF3Q5TH69 2177 aa7.89□□□□□ -1.15
USP28-205ENST00000537706 VIMP08670 466 aaKnown RBP7.89□□□□□ -1.15
USP28-205ENST00000537706 COL8A2P25067 703 aa7.89□□□□□ -1.15
USP28-205ENST00000537706 THBS4P35443 961 aa7.89□□□□□ -1.15
USP28-205ENST00000537706 TRA2BP62995 288 aaKnown RBP7.89□□□□□ -1.15
USP28-205ENST00000537706 NAAAQ02083 359 aa7.89□□□□□ -1.15
USP28-205ENST00000537706 TEKQ02763 1124 aa7.89□□□□□ -1.15
USP28-205ENST00000537706 ZNF460Q14592 562 aa7.89□□□□□ -1.15
USP28-205ENST00000537706 CPSF6Q16630 551 aaKnown RBP eCLIP7.89□□□□□ -1.15
USP28-205ENST00000537706 TUSC1Q2TAM9 212 aa7.89□□□□□ -1.15
USP28-205ENST00000537706 C3orf36Q3SXR2 165 aa7.89□□□□□ -1.15
USP28-205ENST00000537706 OTUD3Q5T2D3 398 aaPredicted RBP7.89□□□□□ -1.15
USP28-205ENST00000537706 TEDDM1Q5T9Z0 273 aa7.89□□□□□ -1.15
USP28-205ENST00000537706 FAM205BPQ63HN1 556 aa7.89□□□□□ -1.15
USP28-205ENST00000537706 CASP12Q6UXS9 341 aa7.89□□□□□ -1.15
USP28-205ENST00000537706 PIGWQ7Z7B1 504 aa7.89□□□□□ -1.15
USP28-205ENST00000537706 TEX9Q8N6V9 391 aa7.89□□□□□ -1.15
USP28-205ENST00000537706 GATSQ8NAP1 163 aa7.89□□□□□ -1.15
USP28-205ENST00000537706 CCDC197Q8NCU1 140 aa7.89□□□□□ -1.15
USP28-205ENST00000537706 ANKRD49Q8WVL7 239 aa7.89□□□□□ -1.15
USP28-205ENST00000537706 ZNF75CPQ92670 426 aaPredicted RBP7.89□□□□□ -1.15
USP28-205ENST00000537706 TAF15Q92804 592 aaKnown RBP eCLIP7.89□□□□□ -1.15
USP28-205ENST00000537706 CNRIP1Q96F85 164 aaPredicted RBP7.89□□□□□ -1.15
USP28-205ENST00000537706 TSPAN17Q96FV3 270 aa7.89□□□□□ -1.15
USP28-205ENST00000537706 SIGLEC10Q96LC7 697 aa7.89□□□□□ -1.15
USP28-205ENST00000537706 ZNF681Q96N22 645 aa7.89□□□□□ -1.15
USP28-205ENST00000537706 NPAS1Q99742 590 aa7.89□□□□□ -1.15
USP28-205ENST00000537706 OCSTAMPQ9BR26 566 aa7.89□□□□□ -1.15
USP28-205ENST00000537706 SHCBP1LQ9BZQ2 653 aa7.89□□□□□ -1.15
USP28-205ENST00000537706 ANKRA2Q9H9E1 313 aa7.89□□□□□ -1.15
USP28-205ENST00000537706 ZNF180Q9UJW8 692 aa7.89□□□□□ -1.15
USP28-205ENST00000537706 IGKV3D-15A0A087WSY6 115 aa7.88□□□□□ -1.15
USP28-205ENST00000537706 SUPT3HB4E1H0 165 aa7.88□□□□□ -1.15
USP28-205ENST00000537706 SCDO00767 359 aa7.88□□□□□ -1.15
USP28-205ENST00000537706 WNT9BO14905 357 aa7.88□□□□□ -1.15
USP28-205ENST00000537706 TYROBPO43914 113 aa7.88□□□□□ -1.15
USP28-205ENST00000537706 SUPT3HO75486 399 aa7.88□□□□□ -1.15
USP28-205ENST00000537706 GPANK1O95872 356 aa7.88□□□□□ -1.15
USP28-205ENST00000537706 GSNP06396 782 aa7.88□□□□□ -1.15
USP28-205ENST00000537706 NGFRP08138 427 aa7.88□□□□□ -1.15
USP28-205ENST00000537706 LINGO3P0C6S8 592 aa7.88□□□□□ -1.15
USP28-205ENST00000537706 CDH2P19022 906 aaPredicted RBP7.88□□□□□ -1.15
USP28-205ENST00000537706 MPGP29372 298 aa7.88□□□□□ -1.15
USP28-205ENST00000537706 MPIP34949 423 aa7.88□□□□□ -1.15
USP28-205ENST00000537706 ARL1P40616 181 aaPredicted RBP7.88□□□□□ -1.15
USP28-205ENST00000537706 PIK3CGP48736 1102 aa7.88□□□□□ -1.15
USP28-205ENST00000537706 SLC25A3Q00325 362 aa7.88□□□□□ -1.15
USP28-205ENST00000537706 MMEL1Q495T6 779 aa7.88□□□□□ -1.15
USP28-205ENST00000537706 CARM1Q86X55 608 aa7.88□□□□□ -1.15
USP28-205ENST00000537706 CDK20Q8IZL9 346 aa7.88□□□□□ -1.15
USP28-205ENST00000537706 OR7G2Q8NG99 324 aa7.88□□□□□ -1.15
USP28-205ENST00000537706 PIGXQ8TBF5 258 aa7.88□□□□□ -1.15
USP28-205ENST00000537706 ST7LQ8TDW4 575 aa7.88□□□□□ -1.15
USP28-205ENST00000537706 RAB8BQ92930 207 aa7.88□□□□□ -1.15
USP28-205ENST00000537706 ZDHHC16Q969W1 377 aa7.88□□□□□ -1.15
USP28-205ENST00000537706 CFAP36Q96G28 342 aa7.88□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 52.3 ms