RNA–Protein interactions for RNA: ENST00000532725.1

CPSF1-209, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 597 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-209ENST00000532725 CLK1P49759 484 aaKnown RBP17.77■□□□□ 0.44
CPSF1-209ENST00000532725 HOXC5Q00444 222 aa17.77■□□□□ 0.44
CPSF1-209ENST00000532725 SYT14P1Q58G82 188 aa17.77■□□□□ 0.44
CPSF1-209ENST00000532725 WBP2NLQ6ICG8 309 aa17.77■□□□□ 0.44
CPSF1-209ENST00000532725 TMPPEQ6ZT21 453 aa17.77■□□□□ 0.44
CPSF1-209ENST00000532725 ARMC8Q8IUR7 673 aa17.77■□□□□ 0.44
CPSF1-209ENST00000532725 BHLHE22Q8NFJ8 381 aaPredicted RBP17.77■□□□□ 0.44
CPSF1-209ENST00000532725 ROBO4Q8WZ75 1007 aa17.77■□□□□ 0.44
CPSF1-209ENST00000532725 CPNE4Q96A23 557 aaPredicted RBP17.77■□□□□ 0.44
CPSF1-209ENST00000532725 OR5B2Q96R09 309 aa17.77■□□□□ 0.44
CPSF1-209ENST00000532725 TMEM72A0PK05 275 aa17.76■□□□□ 0.43
CPSF1-209ENST00000532725 ZNF208O43345 1280 aa17.76■□□□□ 0.43
CPSF1-209ENST00000532725 HNRNPRO43390 633 aaKnown RBP17.76■□□□□ 0.43
CPSF1-209ENST00000532725 PRDX6P30041 224 aa17.76■□□□□ 0.43
CPSF1-209ENST00000532725 ASCL1P50553 236 aa17.76■□□□□ 0.43
CPSF1-209ENST00000532725 MAP2K6P52564 334 aa17.76■□□□□ 0.43
CPSF1-209ENST00000532725 COPZ1P61923 177 aa17.76■□□□□ 0.43
CPSF1-209ENST00000532725 ZNF239Q16600 458 aaKnown RBP17.76■□□□□ 0.43
CPSF1-209ENST00000532725 DUSP7Q16829 419 aa17.76■□□□□ 0.43
CPSF1-209ENST00000532725 PPP4R4Q6NUP7 873 aa17.76■□□□□ 0.43
CPSF1-209ENST00000532725 C8orf82Q6P1X6 216 aaPredicted RBP17.76■□□□□ 0.43
CPSF1-209ENST00000532725 CCDC80Q76M96 950 aa17.76■□□□□ 0.43
CPSF1-209ENST00000532725 BTLAQ7Z6A9 289 aa17.76■□□□□ 0.43
CPSF1-209ENST00000532725 SLC15A3Q8IY34 581 aa17.76■□□□□ 0.43
CPSF1-209ENST00000532725 CMTM5Q96DZ9 223 aa17.76■□□□□ 0.43
CPSF1-209ENST00000532725 REXO5Q96IC2 774 aaKnown RBP17.76■□□□□ 0.43
CPSF1-209ENST00000532725 ARL5BQ96KC2 179 aa17.76■□□□□ 0.43
CPSF1-209ENST00000532725 WFDC6Q9BQY6 131 aa17.76■□□□□ 0.43
CPSF1-209ENST00000532725 OR11A1Q9GZK7 315 aa17.76■□□□□ 0.43
CPSF1-209ENST00000532725 PIGMQ9H3S5 423 aa17.76■□□□□ 0.43
CPSF1-209ENST00000532725 CMTM6Q9NX76 183 aa17.76■□□□□ 0.43
CPSF1-209ENST00000532725 USP22Q9UPT9 525 aa17.76■□□□□ 0.43
CPSF1-209ENST00000532725 SPIN1Q9Y657 262 aaPredicted RBP17.76■□□□□ 0.43
CPSF1-209ENST00000532725 A8MXE2 369 aa17.75■□□□□ 0.43
CPSF1-209ENST00000532725 CGAP01215 116 aa17.75■□□□□ 0.43
CPSF1-209ENST00000532725 CCNA2P20248 432 aa17.75■□□□□ 0.43
CPSF1-209ENST00000532725 ENPP1P22413 925 aa17.75■□□□□ 0.43
CPSF1-209ENST00000532725 DIO1P49895 249 aa17.75■□□□□ 0.43
CPSF1-209ENST00000532725 GTF2IRD2BQ6EKJ0 949 aa17.75■□□□□ 0.43
CPSF1-209ENST00000532725 VWA1Q6PCB0 445 aa17.75■□□□□ 0.43
CPSF1-209ENST00000532725 HACD2Q6Y1H2 254 aa17.75■□□□□ 0.43
CPSF1-209ENST00000532725 FAM214BQ7L5A3 538 aa17.75■□□□□ 0.43
CPSF1-209ENST00000532725 PATL1Q86TB9 770 aaKnown RBP17.75■□□□□ 0.43
CPSF1-209ENST00000532725 GTF2IRD2Q86UP8 949 aa17.75■□□□□ 0.43
CPSF1-209ENST00000532725 LSRQ86X29 649 aaPredicted RBP17.75■□□□□ 0.43
CPSF1-209ENST00000532725 DMRTC2Q8IXT2 367 aaPredicted RBP17.75■□□□□ 0.43
CPSF1-209ENST00000532725 CADM2Q8N3J6 435 aa17.75■□□□□ 0.43
CPSF1-209ENST00000532725 ANKS4BQ8N8V4 417 aa17.75■□□□□ 0.43
CPSF1-209ENST00000532725 CNEP1R1Q8N9A8 125 aa17.75■□□□□ 0.43
CPSF1-209ENST00000532725 SMYD1Q8NB12 490 aa17.75■□□□□ 0.43
CPSF1-209ENST00000532725 RNASE6Q93091 150 aaKnown RBP17.75■□□□□ 0.43
CPSF1-209ENST00000532725 GMPPAQ96IJ6 420 aaPredicted RBP17.75■□□□□ 0.43
CPSF1-209ENST00000532725 HOPXQ9BPY8 73 aaPredicted RBP17.75■□□□□ 0.43
CPSF1-209ENST00000532725 GLRX2Q9NS18 164 aa17.75■□□□□ 0.43
CPSF1-209ENST00000532725 HDGFL3Q9Y3E1 203 aa17.75■□□□□ 0.43
CPSF1-209ENST00000532725 CCT8L1PA6NM43 557 aa17.74■□□□□ 0.43
CPSF1-209ENST00000532725 SULT2B1O00204 365 aa17.74■□□□□ 0.43
CPSF1-209ENST00000532725 SS18L1O75177 396 aaPredicted RBP17.74■□□□□ 0.43
CPSF1-209ENST00000532725 LGI1O95970 557 aa17.74■□□□□ 0.43
CPSF1-209ENST00000532725 TFPIP10646 304 aa17.74■□□□□ 0.43
CPSF1-209ENST00000532725 COX6B1P14854 86 aa17.74■□□□□ 0.43
CPSF1-209ENST00000532725 KCNJ5P48544 419 aa17.74■□□□□ 0.43
CPSF1-209ENST00000532725 CRYBA2P53672 197 aa17.74■□□□□ 0.43
CPSF1-209ENST00000532725 MYBPHQ13203 477 aa17.74■□□□□ 0.43
CPSF1-209ENST00000532725 VEZF1Q14119 521 aa17.74■□□□□ 0.43
CPSF1-209ENST00000532725 INTS11Q5TA45 600 aaKnown RBP17.74■□□□□ 0.43
CPSF1-209ENST00000532725 ERICH5Q6P6B1 374 aa17.74■□□□□ 0.43
CPSF1-209ENST00000532725 MEX3BQ6ZN04 569 aaKnown RBP17.74■□□□□ 0.43
CPSF1-209ENST00000532725 FCRLAQ7L513 359 aa17.74■□□□□ 0.43
CPSF1-209ENST00000532725 LSMEM1Q8N8F7 131 aa17.74■□□□□ 0.43
CPSF1-209ENST00000532725 GPR32P1Q8NGA4 272 aa17.74■□□□□ 0.43
CPSF1-209ENST00000532725 RNF128Q8TEB7 428 aa17.74■□□□□ 0.43
CPSF1-209ENST00000532725 MARVELD3Q96A59 401 aa17.74■□□□□ 0.43
CPSF1-209ENST00000532725 C3orf49Q96BT1 292 aa17.74■□□□□ 0.43
CPSF1-209ENST00000532725 TAMM41Q96BW9 452 aa17.74■□□□□ 0.43
CPSF1-209ENST00000532725 PRR14Q9BWN1 585 aa17.74■□□□□ 0.43
CPSF1-209ENST00000532725 FOXD3Q9UJU5 478 aaPredicted RBP17.74■□□□□ 0.43
CPSF1-209ENST00000532725 ADAM21Q9UKJ8 722 aa17.74■□□□□ 0.43
CPSF1-209ENST00000532725 PACSIN3Q9UKS6 424 aa17.74■□□□□ 0.43
CPSF1-209ENST00000532725 CLEC4AQ9UMR7 237 aa17.74■□□□□ 0.43
CPSF1-209ENST00000532725 TRAPPC4Q9Y296 219 aa17.74■□□□□ 0.43
CPSF1-209ENST00000532725 AP3M1Q9Y2T2 418 aa17.74■□□□□ 0.43
CPSF1-209ENST00000532725 CACNA1DQ01668 2161 aa17.73■□□□□ 0.43
CPSF1-209ENST00000532725 ZC3H12DA2A288 527 aaKnown RBP17.73■□□□□ 0.43
CPSF1-209ENST00000532725 EEF1E1-BLOC1S5C9J1V9 151 aa17.73■□□□□ 0.43
CPSF1-209ENST00000532725 MSTNO14793 375 aa17.73■□□□□ 0.43
CPSF1-209ENST00000532725 EEF1E1O43324 174 aaKnown RBP17.73■□□□□ 0.43
CPSF1-209ENST00000532725 TPST2O60704 377 aa17.73■□□□□ 0.43
CPSF1-209ENST00000532725 PRKD3O94806 890 aa17.73■□□□□ 0.43
CPSF1-209ENST00000532725 PMS2P2O95744 297 aa17.73■□□□□ 0.43
CPSF1-209ENST00000532725 OPN1SWP03999 348 aa17.73■□□□□ 0.43
CPSF1-209ENST00000532725 C8BP07358 591 aa17.73■□□□□ 0.43
CPSF1-209ENST00000532725 KLK2P20151 261 aa17.73■□□□□ 0.43
CPSF1-209ENST00000532725 CXCR1P25024 350 aa17.73■□□□□ 0.43
CPSF1-209ENST00000532725 HTR2AP28223 471 aa17.73■□□□□ 0.43
CPSF1-209ENST00000532725 CSNK2A1P68400 391 aaPredicted RBP17.73■□□□□ 0.43
CPSF1-209ENST00000532725 ARPINQ7Z6K5 226 aa17.73■□□□□ 0.43
CPSF1-209ENST00000532725 LUZP2Q86TE4 346 aa17.73■□□□□ 0.43
CPSF1-209ENST00000532725 ATG4DQ86TL0 474 aaPredicted RBP17.73■□□□□ 0.43
CPSF1-209ENST00000532725 SLC43A2Q8N370 569 aa17.73■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms