RNA–Protein interactions for RNA: ENST00000531110.5

CD44-231, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-231	ENST00000531110	BARHL2	Q9NY43	387 aa		5.15	□□□□□ -1.59
CD44-231	ENST00000531110	VNN3	Q9NY84	501 aa		5.15	□□□□□ -1.59
CD44-231	ENST00000531110	TMEM181	Q9P2C4	612 aa		5.15	□□□□□ -1.59
CD44-231	ENST00000531110	STOX2	Q9P2F5	926 aa	Predicted RBP	5.15	□□□□□ -1.59
CD44-231	ENST00000531110	IFT80	Q9P2H3	777 aa	Predicted RBP	5.15	□□□□□ -1.59
CD44-231	ENST00000531110	SEC14L3	Q9UDX4	400 aa		5.15	□□□□□ -1.59
CD44-231	ENST00000531110	SLCO1B1	Q9Y6L6	691 aa		5.15	□□□□□ -1.59
CD44-231	ENST00000531110	FRMPD1	Q5SYB0	1578 aa		5.15	□□□□□ -1.59
CD44-231	ENST00000531110	KIAA0556	O60303	1618 aa		5.15	□□□□□ -1.59
CD44-231	ENST00000531110	CHD4	Q14839	1912 aa		5.15	□□□□□ -1.59
CD44-231	ENST00000531110	ROBO3	Q96MS0	1386 aa		5.15	□□□□□ -1.59
CD44-231	ENST00000531110	LAMB1	P07942	1786 aa		5.14	□□□□□ -1.59
CD44-231	ENST00000531110	KIF1B	O60333	1816 aa		5.14	□□□□□ -1.59
CD44-231	ENST00000531110	ARHGAP5	Q13017	1502 aa		5.14	□□□□□ -1.59
CD44-231	ENST00000531110	TRBV5-7	A0A0A0MS05	114 aa		5.14	□□□□□ -1.59
CD44-231	ENST00000531110	TCRBV21S2A2	A0A5A6	115 aa		5.14	□□□□□ -1.59
CD44-231	ENST00000531110	TCRBV3S1	A0A5B6	114 aa		5.14	□□□□□ -1.59
CD44-231	ENST00000531110	CIB4	A0PJX0	185 aa		5.14	□□□□□ -1.59
CD44-231	ENST00000531110	PI4KAP2	A4QPH2	592 aa		5.14	□□□□□ -1.59
CD44-231	ENST00000531110	TRAPPC13	A5PLN9	417 aa		5.14	□□□□□ -1.59
CD44-231	ENST00000531110	METTL21EP	A6NDL7	271 aa		5.14	□□□□□ -1.59
CD44-231	ENST00000531110	NEMP2	A6NFY4	417 aa		5.14	□□□□□ -1.59
CD44-231	ENST00000531110	MGAT4D	A6NG13	374 aa		5.14	□□□□□ -1.59
CD44-231	ENST00000531110		D6RAR5	112 aa		5.14	□□□□□ -1.59
CD44-231	ENST00000531110	LGALS8	O00214	317 aa		5.14	□□□□□ -1.59
CD44-231	ENST00000531110	MLYCD	O95822	493 aa		5.14	□□□□□ -1.59
CD44-231	ENST00000531110	FADS2	O95864	444 aa	Known RBP	5.14	□□□□□ -1.59
CD44-231	ENST00000531110	HPR	P00739	348 aa		5.14	□□□□□ -1.59
CD44-231	ENST00000531110	IFNA21	P01568	189 aa		5.14	□□□□□ -1.59
CD44-231	ENST00000531110	IFI30	P13284	250 aa		5.14	□□□□□ -1.59
CD44-231	ENST00000531110	ARSA	P15289	507 aa		5.14	□□□□□ -1.59
CD44-231	ENST00000531110	FOSL2	P15408	326 aa		5.14	□□□□□ -1.59
CD44-231	ENST00000531110	TNFRSF1B	P20333	461 aa		5.14	□□□□□ -1.59
CD44-231	ENST00000531110	AGA	P20933	346 aa		5.14	□□□□□ -1.59
CD44-231	ENST00000531110	PTN	P21246	168 aa		5.14	□□□□□ -1.59
CD44-231	ENST00000531110	CA4	P22748	312 aa		5.14	□□□□□ -1.59
CD44-231	ENST00000531110	EEF1B2	P24534	225 aa	Known RBP	5.14	□□□□□ -1.59
CD44-231	ENST00000531110	MYL9	P24844	172 aa		5.14	□□□□□ -1.59
CD44-231	ENST00000531110	AVPR2	P30518	371 aa		5.14	□□□□□ -1.59
CD44-231	ENST00000531110	GGT5	P36269	586 aa		5.14	□□□□□ -1.59
CD44-231	ENST00000531110	PTGFR	P43088	359 aa		5.14	□□□□□ -1.59
CD44-231	ENST00000531110	MAGEA3	P43357	314 aa		5.14	□□□□□ -1.59
CD44-231	ENST00000531110	CAMLG	P49069	296 aa		5.14	□□□□□ -1.59
CD44-231	ENST00000531110	ACOT2	P49753	483 aa		5.14	□□□□□ -1.59
CD44-231	ENST00000531110	NUMB	P49757	651 aa		5.14	□□□□□ -1.59
CD44-231	ENST00000531110	DNA2	P51530	1060 aa		5.14	□□□□□ -1.59
CD44-231	ENST00000531110	RAG2	P55895	527 aa		5.14	□□□□□ -1.59
CD44-231	ENST00000531110	EIF5A	P63241	154 aa	Known RBP	5.14	□□□□□ -1.59
CD44-231	ENST00000531110	SPIB	Q01892	262 aa		5.14	□□□□□ -1.59
CD44-231	ENST00000531110	KHDRBS1	Q07666	443 aa	Known RBP eCLIP	5.14	□□□□□ -1.59
CD44-231	ENST00000531110	TRAF3	Q13114	568 aa		5.14	□□□□□ -1.59
CD44-231	ENST00000531110	EXOSC2	Q13868	293 aa	Known RBP	5.14	□□□□□ -1.59
CD44-231	ENST00000531110	GK2	Q14410	553 aa	Predicted RBP	5.14	□□□□□ -1.59
CD44-231	ENST00000531110	TWISTNB	Q3B726	338 aa	Predicted RBP	5.14	□□□□□ -1.59
CD44-231	ENST00000531110	CELF3	Q5SZQ8	465 aa	Known RBP	5.14	□□□□□ -1.59
CD44-231	ENST00000531110	AFTPH	Q6ULP2	937 aa		5.14	□□□□□ -1.59
CD44-231	ENST00000531110	HSDL2	Q6YN16	418 aa		5.14	□□□□□ -1.59
CD44-231	ENST00000531110	RASSF6	Q6ZTQ3	369 aa		5.14	□□□□□ -1.59
CD44-231	ENST00000531110	DENND5B	Q6ZUT9	1274 aa		5.14	□□□□□ -1.59
CD44-231	ENST00000531110	ASB18	Q6ZVZ8	466 aa		5.14	□□□□□ -1.59
CD44-231	ENST00000531110	ERN2	Q76MJ5	926 aa	Known RBP	5.14	□□□□□ -1.59
CD44-231	ENST00000531110	SLC16A13	Q7RTY0	426 aa		5.14	□□□□□ -1.59
CD44-231	ENST00000531110	PXK	Q7Z7A4	578 aa		5.14	□□□□□ -1.59
CD44-231	ENST00000531110	ADGRA1	Q86SQ6	560 aa		5.14	□□□□□ -1.59
CD44-231	ENST00000531110	ZC3HC1	Q86WB0	502 aa	Known RBP	5.14	□□□□□ -1.59
CD44-231	ENST00000531110	TMC8	Q8IU68	726 aa		5.14	□□□□□ -1.59
CD44-231	ENST00000531110	PGAM4	Q8N0Y7	254 aa		5.14	□□□□□ -1.59
CD44-231	ENST00000531110	LRRC18	Q8N456	261 aa		5.14	□□□□□ -1.59
CD44-231	ENST00000531110	C17orf78	Q8N4C9	275 aa		5.14	□□□□□ -1.59
CD44-231	ENST00000531110	CERS5	Q8N5B7	392 aa		5.14	□□□□□ -1.59
CD44-231	ENST00000531110	METTL13	Q8N6R0	699 aa		5.14	□□□□□ -1.59
CD44-231	ENST00000531110	L3MBTL4	Q8NA19	623 aa		5.14	□□□□□ -1.59
CD44-231	ENST00000531110	OR2T4	Q8NH00	348 aa		5.14	□□□□□ -1.59
CD44-231	ENST00000531110	ADAMTS14	Q8WXS8	1223 aa		5.14	□□□□□ -1.59
CD44-231	ENST00000531110	RASD2	Q96D21	266 aa		5.14	□□□□□ -1.59
CD44-231	ENST00000531110	ORAI1	Q96D31	301 aa		5.14	□□□□□ -1.59
CD44-231	ENST00000531110	YIPF6	Q96EC8	236 aa		5.14	□□□□□ -1.59
CD44-231	ENST00000531110	PSMB7	Q99436	277 aa		5.14	□□□□□ -1.59
CD44-231	ENST00000531110	RBBP8	Q99708	897 aa		5.14	□□□□□ -1.59
CD44-231	ENST00000531110	HSD17B14	Q9BPX1	270 aa		5.14	□□□□□ -1.59
CD44-231	ENST00000531110	AIF1L	Q9BQI0	150 aa		5.14	□□□□□ -1.59
CD44-231	ENST00000531110	LXN	Q9BS40	222 aa		5.14	□□□□□ -1.59
CD44-231	ENST00000531110	TMEM208	Q9BTX3	173 aa		5.14	□□□□□ -1.59
CD44-231	ENST00000531110	WRAP53	Q9BUR4	548 aa	Known RBP	5.14	□□□□□ -1.59
CD44-231	ENST00000531110	FICD	Q9BVA6	458 aa		5.14	□□□□□ -1.59
CD44-231	ENST00000531110	PARD6G	Q9BYG4	376 aa	Predicted RBP	5.14	□□□□□ -1.59
CD44-231	ENST00000531110	NXF3	Q9H4D5	531 aa	Known RBP	5.14	□□□□□ -1.59
CD44-231	ENST00000531110	EPHX3	Q9H6B9	360 aa		5.14	□□□□□ -1.59
CD44-231	ENST00000531110	MRPL47	Q9HD33	250 aa	Known RBP	5.14	□□□□□ -1.59
CD44-231	ENST00000531110	ABCB9	Q9NP78	766 aa		5.14	□□□□□ -1.59
CD44-231	ENST00000531110	SLCO1B3	Q9NPD5	702 aa		5.14	□□□□□ -1.59
CD44-231	ENST00000531110	ZNF302	Q9NR11	478 aa		5.14	□□□□□ -1.59
CD44-231	ENST00000531110	GHRL	Q9UBU3	117 aa		5.14	□□□□□ -1.59
CD44-231	ENST00000531110	WNT16	Q9UBV4	365 aa		5.14	□□□□□ -1.59
CD44-231	ENST00000531110	CHRNA9	Q9UGM1	479 aa		5.14	□□□□□ -1.59
CD44-231	ENST00000531110	PPIE	Q9UNP9	301 aa	Known RBP	5.14	□□□□□ -1.59
CD44-231	ENST00000531110	ICK	Q9UPZ9	632 aa		5.14	□□□□□ -1.59
CD44-231	ENST00000531110	SLC22A13	Q9Y226	551 aa		5.14	□□□□□ -1.59
CD44-231	ENST00000531110	CARHSP1	Q9Y2V2	147 aa	Known RBP	5.14	□□□□□ -1.59
CD44-231	ENST00000531110	ZNF337	Q9Y3M9	751 aa		5.14	□□□□□ -1.59

Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms