RNA–Protein interactions for RNA: ENST00000527326.1

CD44-225, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 718 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-225ENST00000527326 TYMPP19971 482 aa5.39□□□□□ -1.55
CD44-225ENST00000527326 ACKR3P25106 362 aa5.39□□□□□ -1.55
CD44-225ENST00000527326 KLRK1P26718 216 aa5.39□□□□□ -1.55
CD44-225ENST00000527326 NMBRP28336 390 aa5.39□□□□□ -1.55
CD44-225ENST00000527326 GABRR2P28476 465 aa5.39□□□□□ -1.55
CD44-225ENST00000527326 PTPN6P29350 595 aa5.39□□□□□ -1.55
CD44-225ENST00000527326 AVPR2P30518 371 aa5.39□□□□□ -1.55
CD44-225ENST00000527326 HOXA13P31271 388 aaPredicted RBP5.39□□□□□ -1.55
CD44-225ENST00000527326 APOBEC3AP31941 199 aaPredicted RBP5.39□□□□□ -1.55
CD44-225ENST00000527326 VIPR1P32241 457 aa5.39□□□□□ -1.55
CD44-225ENST00000527326 ARL4AP40617 200 aa5.39□□□□□ -1.55
CD44-225ENST00000527326 MTNR1BP49286 362 aa5.39□□□□□ -1.55
CD44-225ENST00000527326 F2RL1P55085 397 aa5.39□□□□□ -1.55
CD44-225ENST00000527326 RAB1AP62820 205 aa5.39□□□□□ -1.55
CD44-225ENST00000527326 RPS25P62851 125 aaKnown RBP5.39□□□□□ -1.55
CD44-225ENST00000527326 SLC14A1Q13336 389 aa5.39□□□□□ -1.55
CD44-225ENST00000527326 MADCAM1Q13477 382 aa5.39□□□□□ -1.55
CD44-225ENST00000527326 KLF9Q13886 244 aaPredicted RBP5.39□□□□□ -1.55
CD44-225ENST00000527326 ZNF460Q14592 562 aa5.39□□□□□ -1.55
CD44-225ENST00000527326 KIAA0040Q15053 153 aa5.39□□□□□ -1.55
CD44-225ENST00000527326 PNLIPRP3Q17RR3 467 aa5.39□□□□□ -1.55
CD44-225ENST00000527326 VMACQ2NL98 169 aa5.39□□□□□ -1.55
CD44-225ENST00000527326 DEFB115Q30KQ5 88 aa5.39□□□□□ -1.55
CD44-225ENST00000527326 TRIM61Q5EBN2 209 aa5.39□□□□□ -1.55
CD44-225ENST00000527326 C6orf136Q5SQH8 315 aa5.39□□□□□ -1.55
CD44-225ENST00000527326 LRIF1Q5T3J3 769 aa5.39□□□□□ -1.55
CD44-225ENST00000527326 NKAIN2Q5VXU1 208 aa5.39□□□□□ -1.55
CD44-225ENST00000527326 KCTD11Q693B1 232 aa5.39□□□□□ -1.55
CD44-225ENST00000527326 NCBP2-AS2Q69YL0 99 aa5.39□□□□□ -1.55
CD44-225ENST00000527326 KIAA0930Q6ICG6 404 aaPredicted RBP5.39□□□□□ -1.55
CD44-225ENST00000527326 CXorf57Q6NSI4 855 aaKnown RBP5.39□□□□□ -1.55
CD44-225ENST00000527326 DLK2Q6UY11 383 aa5.39□□□□□ -1.55
CD44-225ENST00000527326 LINGO4Q6UY18 593 aa5.39□□□□□ -1.55
CD44-225ENST00000527326 LANCL3Q6ZV70 420 aa5.39□□□□□ -1.55
CD44-225ENST00000527326 OTOP2Q7RTS6 562 aa5.39□□□□□ -1.55
CD44-225ENST00000527326 TRMT1LQ7Z2T5 733 aaKnown RBP5.39□□□□□ -1.55
CD44-225ENST00000527326 SERPINA11Q86U17 422 aa5.39□□□□□ -1.55
CD44-225ENST00000527326 NRROSQ86YC3 692 aa5.39□□□□□ -1.55
CD44-225ENST00000527326 PTOV1Q86YD1 416 aa5.39□□□□□ -1.55
CD44-225ENST00000527326 ZNF573Q86YE8 665 aa5.39□□□□□ -1.55
CD44-225ENST00000527326 MCEMP1Q8IX19 187 aa5.39□□□□□ -1.55
CD44-225ENST00000527326 GPR135Q8IZ08 494 aa5.39□□□□□ -1.55
CD44-225ENST00000527326 FAM185AQ8N0U4 392 aa5.39□□□□□ -1.55
CD44-225ENST00000527326 ZNF567Q8N184 647 aa5.39□□□□□ -1.55
CD44-225ENST00000527326 ZBTB2Q8N680 514 aa5.39□□□□□ -1.55
CD44-225ENST00000527326 C7orf31Q8N865 590 aa5.39□□□□□ -1.55
CD44-225ENST00000527326 PTGR2Q8N8N7 351 aaPredicted RBP5.39□□□□□ -1.55
CD44-225ENST00000527326 RHEBL1Q8TAI7 183 aa5.39□□□□□ -1.55
CD44-225ENST00000527326 M1APQ8TC57 530 aa5.39□□□□□ -1.55
CD44-225ENST00000527326 ATG4CQ96DT6 458 aa5.39□□□□□ -1.55
CD44-225ENST00000527326 P2RY11Q96G91 374 aa5.39□□□□□ -1.55
CD44-225ENST00000527326 SENP5Q96HI0 755 aaPredicted RBP5.39□□□□□ -1.55
CD44-225ENST00000527326 TPD52L3Q96J77 140 aa5.39□□□□□ -1.55
CD44-225ENST00000527326 PIWIL1Q96J94 861 aaKnown RBP5.39□□□□□ -1.55
CD44-225ENST00000527326 C5orf34Q96MH7 638 aa5.39□□□□□ -1.55
CD44-225ENST00000527326 ZDHHC15Q96MV8 337 aa5.39□□□□□ -1.55
CD44-225ENST00000527326 GAL3ST4Q96RP7 486 aa5.39□□□□□ -1.55
CD44-225ENST00000527326 DPH2Q9BQC3 489 aaPredicted RBP5.39□□□□□ -1.55
CD44-225ENST00000527326 ATG101Q9BSB4 218 aa5.39□□□□□ -1.55
CD44-225ENST00000527326 PCGF1Q9BSM1 259 aa5.39□□□□□ -1.55
CD44-225ENST00000527326 FAIM2Q9BWQ8 316 aa5.39□□□□□ -1.55
CD44-225ENST00000527326 TKTL2Q9H0I9 626 aa5.39□□□□□ -1.55
CD44-225ENST00000527326 ABHD16BQ9H3Z7 469 aa5.39□□□□□ -1.55
CD44-225ENST00000527326 PLEKHA1Q9HB21 404 aa5.39□□□□□ -1.55
CD44-225ENST00000527326 TMEM27Q9HBJ8 222 aa5.39□□□□□ -1.55
CD44-225ENST00000527326 POPDC3Q9HBV1 291 aa5.39□□□□□ -1.55
CD44-225ENST00000527326 SPHK2Q9NRA0 654 aa5.39□□□□□ -1.55
CD44-225ENST00000527326 CA10Q9NS85 328 aa5.39□□□□□ -1.55
CD44-225ENST00000527326 ASB6Q9NWX5 421 aa5.39□□□□□ -1.55
CD44-225ENST00000527326 KLHL8Q9P2G9 620 aaPredicted RBP5.39□□□□□ -1.55
CD44-225ENST00000527326 ZNF70Q9UC06 446 aaPredicted RBP5.39□□□□□ -1.55
CD44-225ENST00000527326 APOBEC3BQ9UH17 382 aaKnown RBP5.39□□□□□ -1.55
CD44-225ENST00000527326 NDOR1Q9UHB4 597 aa5.39□□□□□ -1.55
CD44-225ENST00000527326 TRMT112Q9UI30 125 aaKnown RBP5.39□□□□□ -1.55
CD44-225ENST00000527326 NEU3Q9UQ49 428 aa5.39□□□□□ -1.55
CD44-225ENST00000527326 SLC5A6Q9Y289 635 aa5.39□□□□□ -1.55
CD44-225ENST00000527326 AAR2Q9Y312 384 aaKnown RBP5.39□□□□□ -1.55
CD44-225ENST00000527326 EXOSC1Q9Y3B2 195 aaKnown RBP5.39□□□□□ -1.55
CD44-225ENST00000527326 OR10H1Q9Y4A9 318 aa5.39□□□□□ -1.55
CD44-225ENST00000527326 TIMM10BQ9Y5J6 103 aa5.39□□□□□ -1.55
CD44-225ENST00000527326 PTGDR2Q9Y5Y4 395 aa5.39□□□□□ -1.55
CD44-225ENST00000527326 SPIN1Q9Y657 262 aaPredicted RBP5.39□□□□□ -1.55
CD44-225ENST00000527326 A0A087WZ62 844 aa5.38□□□□□ -1.55
CD44-225ENST00000527326 A0A1W2PQH9 124 aa5.38□□□□□ -1.55
CD44-225ENST00000527326 SMCO3A2RU48 225 aa5.38□□□□□ -1.55
CD44-225ENST00000527326 GSAPA4D1B5 854 aa5.38□□□□□ -1.55
CD44-225ENST00000527326 OR5H15A6NDH6 313 aa5.38□□□□□ -1.55
CD44-225ENST00000527326 GGT3PA6NGU5 568 aa5.38□□□□□ -1.55
CD44-225ENST00000527326 A6NIZ1 184 aa5.38□□□□□ -1.55
CD44-225ENST00000527326 OR5H1A6NKK0 313 aa5.38□□□□□ -1.55
CD44-225ENST00000527326 A6NLC8 198 aa5.38□□□□□ -1.55
CD44-225ENST00000527326 IFITM10A6NMD0 228 aa5.38□□□□□ -1.55
CD44-225ENST00000527326 FAM171A2A8MVW0 826 aa5.38□□□□□ -1.55
CD44-225ENST00000527326 GPR89AB7ZAQ6 455 aa5.38□□□□□ -1.55
CD44-225ENST00000527326 NPIPA2E9PIF3 369 aa5.38□□□□□ -1.55
CD44-225ENST00000527326 TLR4O00206 839 aa5.38□□□□□ -1.55
CD44-225ENST00000527326 CYR61O00622 381 aa5.38□□□□□ -1.55
CD44-225ENST00000527326 OR7A17O14581 309 aa5.38□□□□□ -1.55
CD44-225ENST00000527326 PGRMC2O15173 223 aa5.38□□□□□ -1.55
CD44-225ENST00000527326 TMPRSS2O15393 492 aa5.38□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 70 ms