RNA–Protein interactions for RNA: ENST00000526204.5

VPS28-205, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,120 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-205ENST00000526204 SYS1Q8N2H4 156 aa19.54■□□□□ 0.72
VPS28-205ENST00000526204 FAM98AQ8NCA5 519 aaKnown RBP19.54■□□□□ 0.72
VPS28-205ENST00000526204 OR4N2Q8NGD1 307 aa19.54■□□□□ 0.72
VPS28-205ENST00000526204 BEX2Q9BXY8 128 aa19.54■□□□□ 0.72
VPS28-205ENST00000526204 Q9N2J8 555 aa19.54■□□□□ 0.72
VPS28-205ENST00000526204 ING3Q9NXR8 418 aa19.54■□□□□ 0.72
VPS28-205ENST00000526204 REV3LO60673 3130 aa19.54■□□□□ 0.72
VPS28-205ENST00000526204 TRAV1-2A0A0B4J238 106 aa19.54■□□□□ 0.72
VPS28-205ENST00000526204 A0A0G2JK05 382 aa19.54■□□□□ 0.72
VPS28-205ENST00000526204 EFCAB7A8K855 629 aa19.54■□□□□ 0.72
VPS28-205ENST00000526204 C10orf142B7Z368 130 aa19.54■□□□□ 0.72
VPS28-205ENST00000526204 HCRTR1O43613 425 aa19.54■□□□□ 0.72
VPS28-205ENST00000526204 CTNSO60931 367 aa19.54■□□□□ 0.72
VPS28-205ENST00000526204 GYPBP06028 91 aa19.54■□□□□ 0.72
VPS28-205ENST00000526204 DBPQ10586 325 aaPredicted RBP19.54■□□□□ 0.72
VPS28-205ENST00000526204 GGTLC2Q14390 218 aa19.54■□□□□ 0.72
VPS28-205ENST00000526204 PYHIN1Q6K0P9 492 aa19.54■□□□□ 0.72
VPS28-205ENST00000526204 ZNF438Q7Z4V0 828 aa19.54■□□□□ 0.72
VPS28-205ENST00000526204 LSRQ86X29 649 aaPredicted RBP19.54■□□□□ 0.72
VPS28-205ENST00000526204 SFTPA2Q8IWL1 248 aa19.54■□□□□ 0.72
VPS28-205ENST00000526204 CADM2Q8N3J6 435 aa19.54■□□□□ 0.72
VPS28-205ENST00000526204 OR5J2Q8NH18 312 aa19.54■□□□□ 0.72
VPS28-205ENST00000526204 LILRB4Q8NHJ6 448 aa19.54■□□□□ 0.72
VPS28-205ENST00000526204 TRMT10AQ8TBZ6 339 aaKnown RBP19.54■□□□□ 0.72
VPS28-205ENST00000526204 PEX11GQ96HA9 241 aa19.54■□□□□ 0.72
VPS28-205ENST00000526204 TRAF4Q9BUZ4 470 aaPredicted RBP19.54■□□□□ 0.72
VPS28-205ENST00000526204 RPRD1BQ9NQG5 326 aaKnown RBP19.54■□□□□ 0.72
VPS28-205ENST00000526204 ST6GALNAC2Q9UJ37 374 aa19.54■□□□□ 0.72
VPS28-205ENST00000526204 SPTY2D1-AS1A0A0U1RR47 76 aa19.53■□□□□ 0.72
VPS28-205ENST00000526204 NPIPB9F8W1W9 429 aa19.53■□□□□ 0.72
VPS28-205ENST00000526204 INMT-MINDY4F8WBC2 141 aa19.53■□□□□ 0.72
VPS28-205ENST00000526204 OGG1O15527 345 aa19.53■□□□□ 0.72
VPS28-205ENST00000526204 PPM1BO75688 479 aa19.53■□□□□ 0.72
VPS28-205ENST00000526204 CTSEP14091 401 aa19.53■□□□□ 0.72
VPS28-205ENST00000526204 RAB3BP20337 219 aa19.53■□□□□ 0.72
VPS28-205ENST00000526204 SLC6A1P30531 599 aa19.53■□□□□ 0.72
VPS28-205ENST00000526204 OR10A3P58181 314 aa19.53■□□□□ 0.72
VPS28-205ENST00000526204 BTG1P62324 171 aa19.53■□□□□ 0.72
VPS28-205ENST00000526204 LGALS3BPQ08380 585 aa19.53■□□□□ 0.72
VPS28-205ENST00000526204 EIF2B5Q13144 721 aaKnown RBP19.53■□□□□ 0.72
VPS28-205ENST00000526204 RPTNQ6XPR3 784 aa19.53■□□□□ 0.72
VPS28-205ENST00000526204 MCATQ8IVS2 390 aaKnown RBP19.53■□□□□ 0.72
VPS28-205ENST00000526204 ZNF595Q8IYB9 648 aa19.53■□□□□ 0.72
VPS28-205ENST00000526204 YIPF7Q8N8F6 280 aa19.53■□□□□ 0.72
VPS28-205ENST00000526204 SGTBQ96EQ0 304 aa19.53■□□□□ 0.72
VPS28-205ENST00000526204 CNN2Q99439 309 aaKnown RBP19.53■□□□□ 0.72
VPS28-205ENST00000526204 KLHL1Q9NR64 748 aa19.53■□□□□ 0.72
VPS28-205ENST00000526204 OR6C70A6NIJ9 312 aa19.52■□□□□ 0.72
VPS28-205ENST00000526204 SCO2O43819 266 aa19.52■□□□□ 0.72
VPS28-205ENST00000526204 PRAMEF2O60811 474 aa19.52■□□□□ 0.72
VPS28-205ENST00000526204 IGHV4-34P06331 123 aa19.52■□□□□ 0.72
VPS28-205ENST00000526204 HIST1H1CP16403 213 aaKnown RBP19.52■□□□□ 0.72
VPS28-205ENST00000526204 TYRP1P17643 537 aa19.52■□□□□ 0.72
VPS28-205ENST00000526204 GBX2P52951 348 aaPredicted RBP19.52■□□□□ 0.72
VPS28-205ENST00000526204 RAB25P57735 213 aa19.52■□□□□ 0.72
VPS28-205ENST00000526204 GPR176Q14439 515 aa19.52■□□□□ 0.72
VPS28-205ENST00000526204 PRTGQ2VWP7 1150 aa19.52■□□□□ 0.72
VPS28-205ENST00000526204 KIRREL2Q6UWL6 708 aa19.52■□□□□ 0.72
VPS28-205ENST00000526204 IL20RBQ6UXL0 311 aa19.52■□□□□ 0.72
VPS28-205ENST00000526204 C19orf47Q8N9M1 422 aaKnown RBP19.52■□□□□ 0.72
VPS28-205ENST00000526204 RCBTB1Q8NDN9 531 aa19.52■□□□□ 0.72
VPS28-205ENST00000526204 ADAMTS18Q8TE60 1221 aa19.52■□□□□ 0.72
VPS28-205ENST00000526204 TRIM63Q969Q1 353 aa19.52■□□□□ 0.72
VPS28-205ENST00000526204 NIPAL2Q9H841 368 aa19.52■□□□□ 0.72
VPS28-205ENST00000526204 MMP17Q9ULZ9 603 aa19.52■□□□□ 0.72
VPS28-205ENST00000526204 FANCMQ8IYD8 2048 aa19.52■□□□□ 0.72
VPS28-205ENST00000526204 SLC9B1P1A6NJY1 282 aa19.52■□□□□ 0.72
VPS28-205ENST00000526204 SRPX2O60687 465 aaPredicted RBP19.52■□□□□ 0.72
VPS28-205ENST00000526204 ARL6IP5O75915 188 aa19.52■□□□□ 0.72
VPS28-205ENST00000526204 CD1AP06126 327 aa19.52■□□□□ 0.72
VPS28-205ENST00000526204 CELA2BP08218 269 aaPredicted RBP19.52■□□□□ 0.72
VPS28-205ENST00000526204 ARSBP15848 533 aa19.52■□□□□ 0.72
VPS28-205ENST00000526204 CCR5P51681 352 aa19.52■□□□□ 0.72
VPS28-205ENST00000526204 RRAS2P62070 204 aaPredicted RBP19.52■□□□□ 0.72
VPS28-205ENST00000526204 IGLV3-21P80748 117 aaPredicted RBP19.52■□□□□ 0.72
VPS28-205ENST00000526204 DLX2Q07687 328 aaPredicted RBP19.52■□□□□ 0.72
VPS28-205ENST00000526204 CCDC85BQ15834 202 aaPredicted RBP19.52■□□□□ 0.72
VPS28-205ENST00000526204 DEFB110Q30KQ9 67 aa19.52■□□□□ 0.72
VPS28-205ENST00000526204 ZNF542PQ5EBM4 170 aa19.52■□□□□ 0.72
VPS28-205ENST00000526204 DPY19L2P2Q6ZN68 376 aa19.52■□□□□ 0.72
VPS28-205ENST00000526204 SSX6Q7RTT6 188 aa19.52■□□□□ 0.72
VPS28-205ENST00000526204 ZNF761Q86XN6 746 aaPredicted RBP19.52■□□□□ 0.72
VPS28-205ENST00000526204 OR4K13Q8NH42 304 aa19.52■□□□□ 0.72
VPS28-205ENST00000526204 SMAP2Q8WU79 429 aaPredicted RBP19.52■□□□□ 0.72
VPS28-205ENST00000526204 HMGB4Q8WW32 186 aa19.52■□□□□ 0.72
VPS28-205ENST00000526204 SMIM19Q96E16 107 aa19.52■□□□□ 0.72
VPS28-205ENST00000526204 MRPL48Q96GC5 212 aaKnown RBP19.52■□□□□ 0.72
VPS28-205ENST00000526204 ZNF578Q96N58 590 aaPredicted RBP19.52■□□□□ 0.72
VPS28-205ENST00000526204 MFRPQ9BY79 579 aa19.52■□□□□ 0.72
VPS28-205ENST00000526204 A0A0A6YYC8 382 aaPredicted RBP19.51■□□□□ 0.71
VPS28-205ENST00000526204 I3L1I5 382 aaPredicted RBP19.51■□□□□ 0.71
VPS28-205ENST00000526204 CLDN4O14493 209 aa19.51■□□□□ 0.71
VPS28-205ENST00000526204 FZD7O75084 574 aa19.51■□□□□ 0.71
VPS28-205ENST00000526204 PON3Q15166 354 aa19.51■□□□□ 0.71
VPS28-205ENST00000526204 YIF1BQ5BJH7 314 aa19.51■□□□□ 0.71
VPS28-205ENST00000526204 SDR9C7Q8NEX9 313 aa19.51■□□□□ 0.71
VPS28-205ENST00000526204 THAP4Q8WY91 577 aa19.51■□□□□ 0.71
VPS28-205ENST00000526204 ZMYND19Q96E35 227 aaPredicted RBP19.51■□□□□ 0.71
VPS28-205ENST00000526204 DGAT2Q96PD7 388 aa19.51■□□□□ 0.71
VPS28-205ENST00000526204 RBCK1Q9BYM8 510 aa19.51■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms