RNA–Protein interactions for RNA: ENST00000525685.5

CD44-219, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 728 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-219ENST00000525685 KIAA1524Q8TCG1 905 aa3.09□□□□□ -1.91
CD44-219ENST00000525685 C17orf50Q8WW18 174 aa3.09□□□□□ -1.91
CD44-219ENST00000525685 CTNNBL1Q8WYA6 563 aaPredicted RBP3.09□□□□□ -1.91
CD44-219ENST00000525685 BCL2L2Q92843 193 aaPredicted RBP3.09□□□□□ -1.91
CD44-219ENST00000525685 C11orf52Q96A22 123 aa3.09□□□□□ -1.91
CD44-219ENST00000525685 TMA16Q96EY4 203 aaKnown RBP3.09□□□□□ -1.91
CD44-219ENST00000525685 CCDC42Q96M95 316 aa3.09□□□□□ -1.91
CD44-219ENST00000525685 RPRD1AQ96P16 312 aaPredicted RBP3.09□□□□□ -1.91
CD44-219ENST00000525685 NAP1L3Q99457 506 aaPredicted RBP3.09□□□□□ -1.91
CD44-219ENST00000525685 GABRG3Q99928 467 aa3.09□□□□□ -1.91
CD44-219ENST00000525685 CNPY3Q9BT09 278 aa3.09□□□□□ -1.91
CD44-219ENST00000525685 SNRNP25Q9BV90 132 aaKnown RBP3.09□□□□□ -1.91
CD44-219ENST00000525685 ZYG11BQ9C0D3 744 aa3.09□□□□□ -1.91
CD44-219ENST00000525685 MRPL47Q9HD33 250 aaKnown RBP3.09□□□□□ -1.91
CD44-219ENST00000525685 ACOXLQ9NUZ1 547 aa3.09□□□□□ -1.91
CD44-219ENST00000525685 PARVAQ9NVD7 372 aa3.09□□□□□ -1.91
CD44-219ENST00000525685 DNAJC11Q9NVH1 559 aa3.09□□□□□ -1.91
CD44-219ENST00000525685 ZNHIT6Q9NWK9 470 aaKnown RBP3.09□□□□□ -1.91
CD44-219ENST00000525685 GPATCH2LQ9NWQ4 482 aa3.09□□□□□ -1.91
CD44-219ENST00000525685 SEC14L4Q9UDX3 406 aa3.09□□□□□ -1.91
CD44-219ENST00000525685 ANAPC7Q9UJX3 599 aa3.09□□□□□ -1.91
CD44-219ENST00000525685 GGA2Q9UJY4 613 aa3.09□□□□□ -1.91
CD44-219ENST00000525685 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP3.09□□□□□ -1.91
CD44-219ENST00000525685 MMP17Q9ULZ9 603 aa3.09□□□□□ -1.91
CD44-219ENST00000525685 TFR2Q9UP52 801 aa3.09□□□□□ -1.91
CD44-219ENST00000525685 SLC9A8Q9Y2E8 581 aa3.09□□□□□ -1.91
CD44-219ENST00000525685 TDRKHQ9Y2W6 561 aaKnown RBP3.09□□□□□ -1.91
CD44-219ENST00000525685 C5orf42Q9H799 3197 aa3.09□□□□□ -1.92
CD44-219ENST00000525685 MYOFQ9NZM1 2061 aa3.08□□□□□ -1.92
CD44-219ENST00000525685 TRBV5-4A0A0C4DH59 114 aa3.08□□□□□ -1.92
CD44-219ENST00000525685 A0A0D9SEW6 157 aa3.08□□□□□ -1.92
CD44-219ENST00000525685 TRIM64A6NGJ6 449 aa3.08□□□□□ -1.92
CD44-219ENST00000525685 TRIM64BA6NI03 449 aa3.08□□□□□ -1.92
CD44-219ENST00000525685 MEI4A8MW99 385 aa3.08□□□□□ -1.92
CD44-219ENST00000525685 FAM25EA8MYX2 175 aa3.08□□□□□ -1.92
CD44-219ENST00000525685 SLC28A1O00337 649 aa3.08□□□□□ -1.92
CD44-219ENST00000525685 CHEK1O14757 476 aa3.08□□□□□ -1.92
CD44-219ENST00000525685 CFLARO15519 480 aa3.08□□□□□ -1.92
CD44-219ENST00000525685 PRPSAP2O60256 369 aa3.08□□□□□ -1.92
CD44-219ENST00000525685 CLDN11O75508 207 aa3.08□□□□□ -1.92
CD44-219ENST00000525685 PROSCO94903 275 aa3.08□□□□□ -1.92
CD44-219ENST00000525685 LCA5LO95447 670 aa3.08□□□□□ -1.92
CD44-219ENST00000525685 APBB3O95704 486 aa3.08□□□□□ -1.92
CD44-219ENST00000525685 RHOCP08134 193 aa3.08□□□□□ -1.92
CD44-219ENST00000525685 H2AFZP0C0S5 128 aa3.08□□□□□ -1.92
CD44-219ENST00000525685 HLA-EP13747 358 aa3.08□□□□□ -1.92
CD44-219ENST00000525685 DESP17661 470 aa3.08□□□□□ -1.92
CD44-219ENST00000525685 GABRG2P18507 467 aa3.08□□□□□ -1.92
CD44-219ENST00000525685 GLRA1P23415 457 aa3.08□□□□□ -1.92
CD44-219ENST00000525685 MIPP30301 263 aa3.08□□□□□ -1.92
CD44-219ENST00000525685 PCK1P35558 622 aa3.08□□□□□ -1.92
CD44-219ENST00000525685 CYLC1P35663 651 aaPredicted RBP3.08□□□□□ -1.92
CD44-219ENST00000525685 ATP6V1E1P36543 226 aa3.08□□□□□ -1.92
CD44-219ENST00000525685 MAGEA1P43355 309 aa3.08□□□□□ -1.92
CD44-219ENST00000525685 CXCL12P48061 93 aa3.08□□□□□ -1.92
CD44-219ENST00000525685 STK19P49842 368 aaPredicted RBP3.08□□□□□ -1.92
CD44-219ENST00000525685 AIF1P55008 147 aa3.08□□□□□ -1.92
CD44-219ENST00000525685 TPI1P60174 286 aa3.08□□□□□ -1.92
CD44-219ENST00000525685 SARNPP82979 210 aaKnown RBP3.08□□□□□ -1.92
CD44-219ENST00000525685 CSTF1Q05048 431 aaKnown RBP3.08□□□□□ -1.92
CD44-219ENST00000525685 ACTN3Q08043 901 aaPredicted RBP3.08□□□□□ -1.92
CD44-219ENST00000525685 HSPA14Q0VDF9 509 aa3.08□□□□□ -1.92
CD44-219ENST00000525685 PIGHQ14442 188 aaPredicted RBP3.08□□□□□ -1.92
CD44-219ENST00000525685 DPYSL2Q16555 572 aa3.08□□□□□ -1.92
CD44-219ENST00000525685 ZNF528Q3MIS6 628 aa3.08□□□□□ -1.92
CD44-219ENST00000525685 GPAT3Q53EU6 434 aa3.08□□□□□ -1.92
CD44-219ENST00000525685 EOGTQ5NDL2 527 aa3.08□□□□□ -1.92
CD44-219ENST00000525685 LEMD1Q68G75 181 aa3.08□□□□□ -1.92
CD44-219ENST00000525685 REP15Q6BDI9 236 aa3.08□□□□□ -1.92
CD44-219ENST00000525685 HIST2H2AA3Q6FI13 130 aa3.08□□□□□ -1.92
CD44-219ENST00000525685 SCYL2Q6P3W7 929 aa3.08□□□□□ -1.92
CD44-219ENST00000525685 ABRAXAS1Q6UWZ7 409 aa3.08□□□□□ -1.92
CD44-219ENST00000525685 LRRC31Q6UY01 552 aa3.08□□□□□ -1.92
CD44-219ENST00000525685 H2AFVQ71UI9 128 aa3.08□□□□□ -1.92
CD44-219ENST00000525685 ASRGL1Q7L266 308 aa3.08□□□□□ -1.92
CD44-219ENST00000525685 SETD3Q86TU7 594 aaPredicted RBP3.08□□□□□ -1.92
CD44-219ENST00000525685 PHC2Q8IXK0 858 aa3.08□□□□□ -1.92
CD44-219ENST00000525685 PEX5LQ8IYB4 626 aa3.08□□□□□ -1.92
CD44-219ENST00000525685 LINC00518Q8N0U6 118 aa3.08□□□□□ -1.92
CD44-219ENST00000525685 PARP8Q8N3A8 854 aa3.08□□□□□ -1.92
CD44-219ENST00000525685 NPWQ8N729 165 aa3.08□□□□□ -1.92
CD44-219ENST00000525685 ZNF557Q8N988 423 aaPredicted RBP3.08□□□□□ -1.92
CD44-219ENST00000525685 DCAF4L2Q8NA75 395 aa3.08□□□□□ -1.92
CD44-219ENST00000525685 TSTD1Q8NFU3 115 aa3.08□□□□□ -1.92
CD44-219ENST00000525685 OR1K1Q8NGR3 316 aa3.08□□□□□ -1.92
CD44-219ENST00000525685 RHOXF1Q8NHV9 184 aa3.08□□□□□ -1.92
CD44-219ENST00000525685 MGARPQ8TDB4 240 aa3.08□□□□□ -1.92
CD44-219ENST00000525685 TBC1D31Q96DN5 1066 aa3.08□□□□□ -1.92
CD44-219ENST00000525685 PANX2Q96RD6 677 aa3.08□□□□□ -1.92
CD44-219ENST00000525685 NUSAP1Q9BXS6 441 aaKnown RBP3.08□□□□□ -1.92
CD44-219ENST00000525685 IQCGQ9H095 443 aaKnown RBP3.08□□□□□ -1.92
CD44-219ENST00000525685 DDX47Q9H0S4 455 aaKnown RBP3.08□□□□□ -1.92
CD44-219ENST00000525685 TMEM245Q9H330 911 aa3.08□□□□□ -1.92
CD44-219ENST00000525685 DHX35Q9H5Z1 703 aaKnown RBP3.08□□□□□ -1.92
CD44-219ENST00000525685 GNB4Q9HAV0 340 aa3.08□□□□□ -1.92
CD44-219ENST00000525685 SLC25A19Q9HC21 320 aa3.08□□□□□ -1.92
CD44-219ENST00000525685 RPS10P5Q9NQ39 176 aa3.08□□□□□ -1.92
CD44-219ENST00000525685 ELOVL2Q9NXB9 296 aa3.08□□□□□ -1.92
CD44-219ENST00000525685 DCAF16Q9NXF7 216 aa3.08□□□□□ -1.92
CD44-219ENST00000525685 UVRAGQ9P2Y5 699 aa3.08□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms