RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 PARPBPQ9NWS1 579 aa11.18□□□□□ -0.62
LIMCH1-213ENST00000511496 H2AFY2Q9P0M6 372 aaPredicted RBP11.18□□□□□ -0.62
LIMCH1-213ENST00000511496 SMIM28A0A1B0GU29 152 aa11.18□□□□□ -0.62
LIMCH1-213ENST00000511496 GNG14A0A1W2PPG7 69 aa11.18□□□□□ -0.62
LIMCH1-213ENST00000511496 CARNS1A5YM72 827 aa11.18□□□□□ -0.62
LIMCH1-213ENST00000511496 ANTXRLA6NF34 631 aa11.18□□□□□ -0.62
LIMCH1-213ENST00000511496 OR5H14A6NHG9 310 aa11.18□□□□□ -0.62
LIMCH1-213ENST00000511496 FAM183AA6NL82 134 aa11.18□□□□□ -0.62
LIMCH1-213ENST00000511496 FAAHO00519 579 aa11.18□□□□□ -0.62
LIMCH1-213ENST00000511496 FGF10O15520 208 aaPredicted RBP11.18□□□□□ -0.62
LIMCH1-213ENST00000511496 NDUFB6O95139 128 aa11.18□□□□□ -0.62
LIMCH1-213ENST00000511496 SBK2P0C263 348 aa11.18□□□□□ -0.62
LIMCH1-213ENST00000511496 RPS10P46783 165 aaKnown RBP11.18□□□□□ -0.62
LIMCH1-213ENST00000511496 CDX1P47902 265 aaPredicted RBP11.18□□□□□ -0.62
LIMCH1-213ENST00000511496 ZNF235Q14590 738 aa11.18□□□□□ -0.62
LIMCH1-213ENST00000511496 ZNF805Q5CZA5 627 aa11.18□□□□□ -0.62
LIMCH1-213ENST00000511496 AADACL4Q5VUY2 407 aa11.18□□□□□ -0.62
LIMCH1-213ENST00000511496 ETFRF1Q6IPR1 90 aa11.18□□□□□ -0.62
LIMCH1-213ENST00000511496 RNF113BQ8IZP6 322 aaKnown RBP11.18□□□□□ -0.62
LIMCH1-213ENST00000511496 ABHD4Q8TB40 342 aa11.18□□□□□ -0.62
LIMCH1-213ENST00000511496 KCTD13Q8WZ19 329 aa11.18□□□□□ -0.62
LIMCH1-213ENST00000511496 FUBP3Q96I24 572 aaKnown RBP eCLIP11.18□□□□□ -0.62
LIMCH1-213ENST00000511496 SMOQ99835 787 aa11.18□□□□□ -0.62
LIMCH1-213ENST00000511496 CHST6Q9GZX3 395 aa11.18□□□□□ -0.62
LIMCH1-213ENST00000511496 BCO1Q9HAY6 547 aa11.18□□□□□ -0.62
LIMCH1-213ENST00000511496 NLE1Q9NVX2 485 aaPredicted RBP11.18□□□□□ -0.62
LIMCH1-213ENST00000511496 TMEM248Q9NWD8 314 aa11.18□□□□□ -0.62
LIMCH1-213ENST00000511496 GOLT1BQ9Y3E0 138 aa11.18□□□□□ -0.62
LIMCH1-213ENST00000511496 A0A0C4DFX4 3053 aa11.17□□□□□ -0.62
LIMCH1-213ENST00000511496 MGAT4DA6NG13 374 aa11.17□□□□□ -0.62
LIMCH1-213ENST00000511496 GGT3PA6NGU5 568 aa11.17□□□□□ -0.62
LIMCH1-213ENST00000511496 ZNF726A6NNF4 738 aa11.17□□□□□ -0.62
LIMCH1-213ENST00000511496 ZBTB42B2RXF5 422 aa11.17□□□□□ -0.62
LIMCH1-213ENST00000511496 REM1O75628 298 aa11.17□□□□□ -0.62
LIMCH1-213ENST00000511496 SLC25A27O95847 323 aa11.17□□□□□ -0.62
LIMCH1-213ENST00000511496 IFNA10P01566 189 aa11.17□□□□□ -0.62
LIMCH1-213ENST00000511496 GBAP04062 536 aa11.17□□□□□ -0.62
LIMCH1-213ENST00000511496 RAB4AP20338 218 aa11.17□□□□□ -0.62
LIMCH1-213ENST00000511496 GJA4P35212 333 aa11.17□□□□□ -0.62
LIMCH1-213ENST00000511496 CLDN12P56749 244 aa11.17□□□□□ -0.62
LIMCH1-213ENST00000511496 RPS26P62854 115 aaKnown RBP11.17□□□□□ -0.62
LIMCH1-213ENST00000511496 MPPED2Q15777 294 aa11.17□□□□□ -0.62
LIMCH1-213ENST00000511496 CSRP2Q16527 193 aa11.17□□□□□ -0.62
LIMCH1-213ENST00000511496 AARDQ4LEZ3 155 aa11.17□□□□□ -0.62
LIMCH1-213ENST00000511496 ACSM3Q53FZ2 586 aa11.17□□□□□ -0.62
LIMCH1-213ENST00000511496 ELFN2Q5R3F8 820 aa11.17□□□□□ -0.62
LIMCH1-213ENST00000511496 WSCD1Q658N2 575 aa11.17□□□□□ -0.62
LIMCH1-213ENST00000511496 RTL10Q7L3V2 364 aa11.17□□□□□ -0.62
LIMCH1-213ENST00000511496 OR4K5Q8NGD3 323 aa11.17□□□□□ -0.62
LIMCH1-213ENST00000511496 BRIX1Q8TDN6 353 aaKnown RBP11.17□□□□□ -0.62
LIMCH1-213ENST00000511496 RGP1Q92546 391 aaPredicted RBP11.17□□□□□ -0.62
LIMCH1-213ENST00000511496 MS4A4AQ96JQ5 239 aa11.17□□□□□ -0.62
LIMCH1-213ENST00000511496 TTTY10Q9BZA0 68 aa11.17□□□□□ -0.62
LIMCH1-213ENST00000511496 POLR1EQ9GZS1 481 aaKnown RBP11.17□□□□□ -0.62
LIMCH1-213ENST00000511496 GDF2Q9UK05 429 aaPredicted RBP11.17□□□□□ -0.62
LIMCH1-213ENST00000511496 IGKV6D-21A0A0A0MT36 114 aa11.17□□□□□ -0.62
LIMCH1-213ENST00000511496 CCSO14618 274 aa11.17□□□□□ -0.62
LIMCH1-213ENST00000511496 EREGO14944 169 aa11.17□□□□□ -0.62
LIMCH1-213ENST00000511496 LDLRAD4O15165 306 aa11.17□□□□□ -0.62
LIMCH1-213ENST00000511496 EMC8O43402 210 aa11.17□□□□□ -0.62
LIMCH1-213ENST00000511496 IFNA17P01571 189 aa11.17□□□□□ -0.62
LIMCH1-213ENST00000511496 ST6GAL1P15907 406 aa11.17□□□□□ -0.62
LIMCH1-213ENST00000511496 CXADRP78310 365 aa11.17□□□□□ -0.62
LIMCH1-213ENST00000511496 PJVKQ0ZLH3 352 aa11.17□□□□□ -0.62
LIMCH1-213ENST00000511496 TWF1Q12792 350 aa11.17□□□□□ -0.62
LIMCH1-213ENST00000511496 INPP5JQ15735 1006 aaPredicted RBP11.17□□□□□ -0.62
LIMCH1-213ENST00000511496 ARHGAP40Q5TG30 622 aa11.17□□□□□ -0.62
LIMCH1-213ENST00000511496 PARGQ86W56 976 aa11.17□□□□□ -0.62
LIMCH1-213ENST00000511496 GPC2Q8N158 579 aa11.17□□□□□ -0.62
LIMCH1-213ENST00000511496 NAXEQ8NCW5 288 aa11.17□□□□□ -0.62
LIMCH1-213ENST00000511496 OR5W2Q8NH69 310 aa11.17□□□□□ -0.62
LIMCH1-213ENST00000511496 THOC3Q96J01 351 aaKnown RBP11.17□□□□□ -0.62
LIMCH1-213ENST00000511496 DERL3Q96Q80 235 aa11.17□□□□□ -0.62
LIMCH1-213ENST00000511496 TEAD3Q99594 435 aa11.17□□□□□ -0.62
LIMCH1-213ENST00000511496 OR51I1Q9H343 314 aa11.17□□□□□ -0.62
LIMCH1-213ENST00000511496 SEC61A2Q9H9S3 476 aa11.17□□□□□ -0.62
LIMCH1-213ENST00000511496 ARL15Q9NXU5 204 aa11.17□□□□□ -0.62
LIMCH1-213ENST00000511496 CACNG4Q9UBN1 327 aa11.17□□□□□ -0.62
LIMCH1-213ENST00000511496 ZC3H12DA2A288 527 aaKnown RBP11.16□□□□□ -0.62
LIMCH1-213ENST00000511496 ARRDC5A6NEK1 342 aa11.16□□□□□ -0.62
LIMCH1-213ENST00000511496 RNASEK-C17orf49H0YIS7 233 aa11.16□□□□□ -0.62
LIMCH1-213ENST00000511496 GSTZ1O43708 216 aaPredicted RBP11.16□□□□□ -0.62
LIMCH1-213ENST00000511496 ACP5P13686 325 aa11.16□□□□□ -0.62
LIMCH1-213ENST00000511496 MNDAP41218 407 aa11.16□□□□□ -0.62
LIMCH1-213ENST00000511496 RBM34P42696 430 aaKnown RBP11.16□□□□□ -0.62
LIMCH1-213ENST00000511496 PTH2RP49190 550 aa11.16□□□□□ -0.62
LIMCH1-213ENST00000511496 SLC16A1P53985 500 aa11.16□□□□□ -0.62
LIMCH1-213ENST00000511496 SHC2P98077 582 aa11.16□□□□□ -0.62
LIMCH1-213ENST00000511496 FOXO1Q12778 655 aa11.16□□□□□ -0.62
LIMCH1-213ENST00000511496 ZNF772Q68DY9 489 aaPredicted RBP11.16□□□□□ -0.62
LIMCH1-213ENST00000511496 NDUFAF7Q7L592 441 aa11.16□□□□□ -0.62
LIMCH1-213ENST00000511496 TMED4Q7Z7H5 227 aa11.16□□□□□ -0.62
LIMCH1-213ENST00000511496 OR4E2Q8NGC2 313 aa11.16□□□□□ -0.62
LIMCH1-213ENST00000511496 SP7Q8TDD2 431 aaPredicted RBP11.16□□□□□ -0.62
LIMCH1-213ENST00000511496 SFXN1Q9H9B4 322 aa11.16□□□□□ -0.62
LIMCH1-213ENST00000511496 ZNF282Q9UDV7 671 aaPredicted RBP11.16□□□□□ -0.62
LIMCH1-213ENST00000511496 MBD1Q9UIS9 605 aaPredicted RBP11.16□□□□□ -0.62
LIMCH1-213ENST00000511496 ANGPT4Q9Y264 503 aa11.16□□□□□ -0.62
LIMCH1-213ENST00000511496 FNDC1Q4ZHG4 1894 aaPredicted RBP11.16□□□□□ -0.62
LIMCH1-213ENST00000511496 ANXA4P09525 319 aaPredicted RBP11.16□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 54.7 ms