RNA–Protein interactions for RNA: ENST00000508501.5

LIMCH1-208, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,054 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-208ENST00000508501 CEBPEQ15744 281 aa10.54□□□□□ -0.72
LIMCH1-208ENST00000508501 GKN2Q86XP6 184 aa10.54□□□□□ -0.72
LIMCH1-208ENST00000508501 OR2T27Q8NH04 317 aa10.54□□□□□ -0.72
LIMCH1-208ENST00000508501 OR52N1Q8NH53 320 aa10.54□□□□□ -0.72
LIMCH1-208ENST00000508501 NDRG1Q92597 394 aaKnown RBP10.54□□□□□ -0.72
LIMCH1-208ENST00000508501 RTP4Q96DX8 246 aa10.54□□□□□ -0.72
LIMCH1-208ENST00000508501 CABLES2Q9BTV7 478 aa10.54□□□□□ -0.72
LIMCH1-208ENST00000508501 C20orf85Q9H1P6 137 aa10.54□□□□□ -0.72
LIMCH1-208ENST00000508501 ZNF160Q9HCG1 818 aa10.54□□□□□ -0.72
LIMCH1-208ENST00000508501 ASH2LQ9UBL3 628 aa10.54□□□□□ -0.72
LIMCH1-208ENST00000508501 FAM166BA8MTA8 275 aa10.54□□□□□ -0.72
LIMCH1-208ENST00000508501 K7ERU9 68 aa10.54□□□□□ -0.72
LIMCH1-208ENST00000508501 PHOX2AO14813 284 aa10.54□□□□□ -0.72
LIMCH1-208ENST00000508501 ZNF207O43670 478 aaKnown RBP10.54□□□□□ -0.72
LIMCH1-208ENST00000508501 PTBP3O95758 552 aaKnown RBP10.54□□□□□ -0.72
LIMCH1-208ENST00000508501 MGMTP16455 207 aa10.54□□□□□ -0.72
LIMCH1-208ENST00000508501 HIST1H3AP68431 136 aa10.54□□□□□ -0.72
LIMCH1-208ENST00000508501 INCA1Q0VD86 236 aa10.54□□□□□ -0.72
LIMCH1-208ENST00000508501 CAMK2BQ13554 666 aa10.54□□□□□ -0.72
LIMCH1-208ENST00000508501 ARHGAP11BQ3KRB8 267 aa10.54□□□□□ -0.72
LIMCH1-208ENST00000508501 GLYR1Q49A26 553 aaPredicted RBP10.54□□□□□ -0.72
LIMCH1-208ENST00000508501 CXCL17Q6UXB2 119 aa10.54□□□□□ -0.72
LIMCH1-208ENST00000508501 CDHR3Q6ZTQ4 885 aa10.54□□□□□ -0.72
LIMCH1-208ENST00000508501 LANCL3Q6ZV70 420 aa10.54□□□□□ -0.72
LIMCH1-208ENST00000508501 OR13C8Q8NGS7 320 aa10.54□□□□□ -0.72
LIMCH1-208ENST00000508501 GPR119Q8TDV5 335 aa10.54□□□□□ -0.72
LIMCH1-208ENST00000508501 CDS1Q92903 461 aa10.54□□□□□ -0.72
LIMCH1-208ENST00000508501 SLC12A9Q9BXP2 914 aa10.54□□□□□ -0.72
LIMCH1-208ENST00000508501 BCAS3Q9H6U6 928 aa10.54□□□□□ -0.72
LIMCH1-208ENST00000508501 G3V3Q6 166 aa10.54□□□□□ -0.72
LIMCH1-208ENST00000508501 SMIM6P0DI80 62 aa10.54□□□□□ -0.72
LIMCH1-208ENST00000508501 CCR7P32248 378 aa10.54□□□□□ -0.72
LIMCH1-208ENST00000508501 P2RX3P56373 397 aa10.54□□□□□ -0.72
LIMCH1-208ENST00000508501 SERTAD2Q14140 314 aa10.54□□□□□ -0.72
LIMCH1-208ENST00000508501 DOC2AQ14183 400 aa10.54□□□□□ -0.72
LIMCH1-208ENST00000508501 TMEM183BQ1AE95 376 aa10.54□□□□□ -0.72
LIMCH1-208ENST00000508501 FCRLAQ7L513 359 aa10.54□□□□□ -0.72
LIMCH1-208ENST00000508501 OR4N2Q8NGD1 307 aa10.54□□□□□ -0.72
LIMCH1-208ENST00000508501 CD200R1Q8TD46 325 aa10.54□□□□□ -0.72
LIMCH1-208ENST00000508501 ZNF566Q969W8 418 aa10.54□□□□□ -0.72
LIMCH1-208ENST00000508501 C11orf49Q9H6J7 331 aa10.54□□□□□ -0.72
LIMCH1-208ENST00000508501 ADAM29Q9UKF5 820 aa10.54□□□□□ -0.72
LIMCH1-208ENST00000508501 ACTL7AQ9Y615 435 aa10.54□□□□□ -0.72
LIMCH1-208ENST00000508501 TRAV20A0A0B4J274 112 aa10.53□□□□□ -0.72
LIMCH1-208ENST00000508501 XKRY2A2RUG3 117 aa10.53□□□□□ -0.72
LIMCH1-208ENST00000508501 TRABD2BA6NFA1 517 aa10.53□□□□□ -0.72
LIMCH1-208ENST00000508501 TMEM221A6NGB7 291 aa10.53□□□□□ -0.72
LIMCH1-208ENST00000508501 A8MUA0 341 aa10.53□□□□□ -0.72
LIMCH1-208ENST00000508501 SLC31A1O15431 190 aa10.53□□□□□ -0.72
LIMCH1-208ENST00000508501 TSPAN6O43657 245 aa10.53□□□□□ -0.72
LIMCH1-208ENST00000508501 PPP1R3DO95685 299 aa10.53□□□□□ -0.72
LIMCH1-208ENST00000508501 AGTR2P50052 363 aa10.53□□□□□ -0.72
LIMCH1-208ENST00000508501 RPE65Q16518 533 aa10.53□□□□□ -0.72
LIMCH1-208ENST00000508501 IAH1Q2TAA2 248 aaPredicted RBP10.53□□□□□ -0.72
LIMCH1-208ENST00000508501 CYP27C1Q4G0S4 372 aa10.53□□□□□ -0.72
LIMCH1-208ENST00000508501 OR4C11Q6IEV9 310 aa10.53□□□□□ -0.72
LIMCH1-208ENST00000508501 SLC35D2Q76EJ3 337 aa10.53□□□□□ -0.72
LIMCH1-208ENST00000508501 TRAPPC6BQ86SZ2 158 aa10.53□□□□□ -0.72
LIMCH1-208ENST00000508501 IGDCC3Q8IVU1 814 aa10.53□□□□□ -0.72
LIMCH1-208ENST00000508501 UMODL1-AS1Q8N2C9 162 aa10.53□□□□□ -0.72
LIMCH1-208ENST00000508501 PRSS35Q8N3Z0 413 aa10.53□□□□□ -0.72
LIMCH1-208ENST00000508501 OR4D10Q8NGI6 311 aa10.53□□□□□ -0.72
LIMCH1-208ENST00000508501 RPL3LQ92901 407 aaKnown RBP10.53□□□□□ -0.72
LIMCH1-208ENST00000508501 SLC35B4Q969S0 331 aa10.53□□□□□ -0.72
LIMCH1-208ENST00000508501 ADIPOR1Q96A54 375 aa10.53□□□□□ -0.72
LIMCH1-208ENST00000508501 LYSMD1Q96S90 227 aa10.53□□□□□ -0.72
LIMCH1-208ENST00000508501 XYLT2Q9H1B5 865 aa10.53□□□□□ -0.72
LIMCH1-208ENST00000508501 STYXL1Q9Y6J8 313 aa10.53□□□□□ -0.72
LIMCH1-208ENST00000508501 ALKQ9UM73 1620 aa10.53□□□□□ -0.72
LIMCH1-208ENST00000508501 ST8SIA3O43173 380 aa10.53□□□□□ -0.72
LIMCH1-208ENST00000508501 TRAPPC6AO75865 159 aa10.53□□□□□ -0.72
LIMCH1-208ENST00000508501 CLDN7O95471 211 aa10.53□□□□□ -0.72
LIMCH1-208ENST00000508501 ZNF8P17098 575 aaPredicted RBP10.53□□□□□ -0.72
LIMCH1-208ENST00000508501 EPHA5P54756 1037 aa10.53□□□□□ -0.72
LIMCH1-208ENST00000508501 PCBD1P61457 104 aa10.53□□□□□ -0.72
LIMCH1-208ENST00000508501 BEX5Q5H9J7 111 aa10.53□□□□□ -0.72
LIMCH1-208ENST00000508501 SFXN4Q6P4A7 337 aa10.53□□□□□ -0.72
LIMCH1-208ENST00000508501 OR5M3Q8NGP4 307 aa10.53□□□□□ -0.72
LIMCH1-208ENST00000508501 ANKRD30BLA7E2S9 258 aa10.53□□□□□ -0.72
LIMCH1-208ENST00000508501 GABARAPH6UMI1 98 aa10.53□□□□□ -0.72
LIMCH1-208ENST00000508501 TGM5O43548 720 aa10.53□□□□□ -0.72
LIMCH1-208ENST00000508501 GPX3P22352 226 aa10.53□□□□□ -0.72
LIMCH1-208ENST00000508501 MRPL19P49406 292 aaKnown RBP10.53□□□□□ -0.72
LIMCH1-208ENST00000508501 GPR85P60893 370 aa10.53□□□□□ -0.72
LIMCH1-208ENST00000508501 PMPCAQ10713 525 aa10.53□□□□□ -0.72
LIMCH1-208ENST00000508501 TSPAN31Q12999 210 aa10.53□□□□□ -0.72
LIMCH1-208ENST00000508501 DACT2Q5SW24 774 aa10.53□□□□□ -0.72
LIMCH1-208ENST00000508501 FAM182BQ5T319 152 aa10.53□□□□□ -0.72
LIMCH1-208ENST00000508501 NADSYN1Q6IA69 706 aa10.53□□□□□ -0.72
LIMCH1-208ENST00000508501 OGFOD3Q6PK18 319 aa10.53□□□□□ -0.72
LIMCH1-208ENST00000508501 PRSS42Q7Z5A4 293 aa10.53□□□□□ -0.72
LIMCH1-208ENST00000508501 FAM160A2Q8N612 972 aaPredicted RBP10.53□□□□□ -0.72
LIMCH1-208ENST00000508501 GLIS1Q8NBF1 620 aa10.53□□□□□ -0.72
LIMCH1-208ENST00000508501 ZBTB44Q8NCP5 570 aa10.53□□□□□ -0.72
LIMCH1-208ENST00000508501 OR5L1Q8NGL2 311 aa10.53□□□□□ -0.72
LIMCH1-208ENST00000508501 TSLPQ969D9 159 aa10.53□□□□□ -0.72
LIMCH1-208ENST00000508501 SLC6A20Q9NP91 592 aa10.53□□□□□ -0.72
LIMCH1-208ENST00000508501 HS3ST4Q9Y661 456 aa10.53□□□□□ -0.72
LIMCH1-208ENST00000508501 MYO3AQ8NEV4 1616 aa10.53□□□□□ -0.72
LIMCH1-208ENST00000508501 TECPR2O15040 1411 aa10.53□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 58.6 ms