RNA–Protein interactions for RNA: ENST00000506630.1

TCOF1-209, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 5

Gene TCOF1, Length 897 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-209ENST00000506630 APOBEC1P41238 236 aaKnown RBP11.74□□□□□ -0.53
TCOF1-209ENST00000506630 HTR3AP46098 478 aa11.74□□□□□ -0.53
TCOF1-209ENST00000506630 CARD18P57730 90 aa11.74□□□□□ -0.53
TCOF1-209ENST00000506630 FOXD4Q12950 439 aaPredicted RBP11.74□□□□□ -0.53
TCOF1-209ENST00000506630 CYLC2Q14093 348 aaPredicted RBP11.74□□□□□ -0.53
TCOF1-209ENST00000506630 ZNF239Q16600 458 aaKnown RBP11.74□□□□□ -0.53
TCOF1-209ENST00000506630 ZSWIM7Q19AV6 140 aa11.74□□□□□ -0.53
TCOF1-209ENST00000506630 COQ5Q5HYK3 327 aa11.74□□□□□ -0.53
TCOF1-209ENST00000506630 ZNF550Q7Z398 422 aa11.74□□□□□ -0.53
TCOF1-209ENST00000506630 LUZP2Q86TE4 346 aa11.74□□□□□ -0.53
TCOF1-209ENST00000506630 KRT73Q86Y46 540 aa11.74□□□□□ -0.53
TCOF1-209ENST00000506630 PCYOX1LQ8NBM8 494 aa11.74□□□□□ -0.53
TCOF1-209ENST00000506630 HIPK4Q8NE63 616 aa11.74□□□□□ -0.53
TCOF1-209ENST00000506630 OR10A6Q8NH74 314 aa11.74□□□□□ -0.53
TCOF1-209ENST00000506630 OSTF1Q92882 214 aa11.74□□□□□ -0.53
TCOF1-209ENST00000506630 CPNE4Q96A23 557 aaPredicted RBP11.74□□□□□ -0.53
TCOF1-209ENST00000506630 LRRC58Q96CX6 371 aa11.74□□□□□ -0.53
TCOF1-209ENST00000506630 REXO5Q96IC2 774 aaKnown RBP11.74□□□□□ -0.53
TCOF1-209ENST00000506630 OR5B2Q96R09 309 aa11.74□□□□□ -0.53
TCOF1-209ENST00000506630 SPATA5L1Q9BVQ7 753 aa11.74□□□□□ -0.53
TCOF1-209ENST00000506630 CCDC106Q9BWC9 280 aa11.74□□□□□ -0.53
TCOF1-209ENST00000506630 SRXN1Q9BYN0 137 aa11.74□□□□□ -0.53
TCOF1-209ENST00000506630 GSX1Q9H4S2 264 aaPredicted RBP11.74□□□□□ -0.53
TCOF1-209ENST00000506630 RNF122Q9H9V4 155 aa11.74□□□□□ -0.53
TCOF1-209ENST00000506630 TIGARQ9NQ88 270 aa11.74□□□□□ -0.53
TCOF1-209ENST00000506630 ST6GALNAC2Q9UJ37 374 aa11.74□□□□□ -0.53
TCOF1-209ENST00000506630 PRRC2AP48634 2157 aaKnown RBP11.74□□□□□ -0.53
TCOF1-209ENST00000506630 GMNCA6NCL1 334 aa11.73□□□□□ -0.53
TCOF1-209ENST00000506630 FRS3O43559 492 aa11.73□□□□□ -0.53
TCOF1-209ENST00000506630 CTAG2O75638 210 aa11.73□□□□□ -0.53
TCOF1-209ENST00000506630 TNFSF13O75888 250 aa11.73□□□□□ -0.53
TCOF1-209ENST00000506630 CRHP06850 196 aa11.73□□□□□ -0.53
TCOF1-209ENST00000506630 TFPIP10646 304 aa11.73□□□□□ -0.53
TCOF1-209ENST00000506630 CCNA2P20248 432 aa11.73□□□□□ -0.53
TCOF1-209ENST00000506630 DRD4P21917 467 aa11.73□□□□□ -0.53
TCOF1-209ENST00000506630 CPA2P48052 419 aa11.73□□□□□ -0.53
TCOF1-209ENST00000506630 DLX5P56178 289 aa11.73□□□□□ -0.53
TCOF1-209ENST00000506630 COPZ1P61923 177 aa11.73□□□□□ -0.53
TCOF1-209ENST00000506630 ADRM1Q16186 407 aa11.73□□□□□ -0.53
TCOF1-209ENST00000506630 SYT14P1Q58G82 188 aa11.73□□□□□ -0.53
TCOF1-209ENST00000506630 NANOGP8Q6NSW7 305 aa11.73□□□□□ -0.53
TCOF1-209ENST00000506630 VWA1Q6PCB0 445 aa11.73□□□□□ -0.53
TCOF1-209ENST00000506630 SERPINA11Q86U17 422 aa11.73□□□□□ -0.53
TCOF1-209ENST00000506630 PTOV1Q86YD1 416 aa11.73□□□□□ -0.53
TCOF1-209ENST00000506630 CLIP4Q8N3C7 705 aa11.73□□□□□ -0.53
TCOF1-209ENST00000506630 CADM2Q8N3J6 435 aa11.73□□□□□ -0.53
TCOF1-209ENST00000506630 C11orf65Q8NCR3 313 aa11.73□□□□□ -0.53
TCOF1-209ENST00000506630 SLC25A43Q8WUT9 341 aaPredicted RBP11.73□□□□□ -0.53
TCOF1-209ENST00000506630 ROBO4Q8WZ75 1007 aa11.73□□□□□ -0.53
TCOF1-209ENST00000506630 RNASE6Q93091 150 aaKnown RBP11.73□□□□□ -0.53
TCOF1-209ENST00000506630 RCN3Q96D15 328 aa11.73□□□□□ -0.53
TCOF1-209ENST00000506630 DNAJA3Q96EY1 480 aa11.73□□□□□ -0.53
TCOF1-209ENST00000506630 ZNF607Q96SK3 696 aa11.73□□□□□ -0.53
TCOF1-209ENST00000506630 PIF1Q9H611 641 aa11.73□□□□□ -0.53
TCOF1-209ENST00000506630 KAT8Q9H7Z6 458 aaKnown RBP11.73□□□□□ -0.53
TCOF1-209ENST00000506630 NANOGQ9H9S0 305 aa11.73□□□□□ -0.53
TCOF1-209ENST00000506630 GID8Q9NWU2 228 aa11.73□□□□□ -0.53
TCOF1-209ENST00000506630 CHRNA9Q9UGM1 479 aa11.73□□□□□ -0.53
TCOF1-209ENST00000506630 PACSIN3Q9UKS6 424 aa11.73□□□□□ -0.53
TCOF1-209ENST00000506630 CLEC4AQ9UMR7 237 aa11.73□□□□□ -0.53
TCOF1-209ENST00000506630 CHST2Q9Y4C5 530 aa11.73□□□□□ -0.53
TCOF1-209ENST00000506630 TMED7-TICAM2A0A0A6YYA0 188 aa11.72□□□□□ -0.53
TCOF1-209ENST00000506630 FXYD1O00168 92 aa11.72□□□□□ -0.53
TCOF1-209ENST00000506630 FAAHO00519 579 aa11.72□□□□□ -0.53
TCOF1-209ENST00000506630 SNX3O60493 162 aa11.72□□□□□ -0.53
TCOF1-209ENST00000506630 SMNDC1O75940 238 aaKnown RBP eCLIP11.72□□□□□ -0.53
TCOF1-209ENST00000506630 TACR3P29371 465 aa11.72□□□□□ -0.53
TCOF1-209ENST00000506630 PRKAR1BP31321 381 aa11.72□□□□□ -0.53
TCOF1-209ENST00000506630 CPOXP36551 454 aa11.72□□□□□ -0.53
TCOF1-209ENST00000506630 ACAA2P42765 397 aaKnown RBP11.72□□□□□ -0.53
TCOF1-209ENST00000506630 POLR2HP52434 150 aaKnown RBP11.72□□□□□ -0.53
TCOF1-209ENST00000506630 CTBP2P56545 445 aa11.72□□□□□ -0.53
TCOF1-209ENST00000506630 RBBP4Q09028 425 aa11.72□□□□□ -0.53
TCOF1-209ENST00000506630 RABL3Q5HYI8 236 aa11.72□□□□□ -0.53
TCOF1-209ENST00000506630 EEF1A1P5Q5VTE0 462 aa11.72□□□□□ -0.53
TCOF1-209ENST00000506630 MTDHQ86UE4 582 aaKnown RBP11.72□□□□□ -0.53
TCOF1-209ENST00000506630 LSRQ86X29 649 aaPredicted RBP11.72□□□□□ -0.53
TCOF1-209ENST00000506630 ZZZ3Q8IYH5 903 aa11.72□□□□□ -0.53
TCOF1-209ENST00000506630 OR8J3Q8NGG0 315 aa11.72□□□□□ -0.53
TCOF1-209ENST00000506630 RP9Q8TA86 221 aaKnown RBP11.72□□□□□ -0.53
TCOF1-209ENST00000506630 ALPK1Q96QP1 1244 aa11.72□□□□□ -0.53
TCOF1-209ENST00000506630 SH3GL1Q99961 368 aa11.72□□□□□ -0.53
TCOF1-209ENST00000506630 ECSITQ9BQ95 431 aa11.72□□□□□ -0.53
TCOF1-209ENST00000506630 CLEC4MQ9H2X3 399 aaPredicted RBP11.72□□□□□ -0.53
TCOF1-209ENST00000506630 PIGMQ9H3S5 423 aa11.72□□□□□ -0.53
TCOF1-209ENST00000506630 FOXD3Q9UJU5 478 aaPredicted RBP11.72□□□□□ -0.53
TCOF1-209ENST00000506630 OSGIN1Q9UJX0 560 aa11.72□□□□□ -0.53
TCOF1-209ENST00000506630 TMED7Q9Y3B3 224 aa11.72□□□□□ -0.53
TCOF1-209ENST00000506630 EMC9Q9Y3B6 208 aa11.72□□□□□ -0.53
TCOF1-209ENST00000506630 ABCA4P78363 2273 aa11.71□□□□□ -0.53
TCOF1-209ENST00000506630 IGHV3-15A0A0B4J1V0 119 aa11.71□□□□□ -0.53
TCOF1-209ENST00000506630 TMEM72A0PK05 275 aa11.71□□□□□ -0.53
TCOF1-209ENST00000506630 SULT2B1O00204 365 aa11.71□□□□□ -0.53
TCOF1-209ENST00000506630 SERPINB7O75635 380 aa11.71□□□□□ -0.53
TCOF1-209ENST00000506630 OPN1SWP03999 348 aa11.71□□□□□ -0.53
TCOF1-209ENST00000506630 COX4I1P13073 169 aa11.71□□□□□ -0.53
TCOF1-209ENST00000506630 PRG2P13727 222 aa11.71□□□□□ -0.53
TCOF1-209ENST00000506630 SLC1A3P43003 542 aa11.71□□□□□ -0.53
TCOF1-209ENST00000506630 KIR2DL2P43627 348 aaPredicted RBP11.71□□□□□ -0.53
TCOF1-209ENST00000506630 DIO1P49895 249 aa11.71□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms