RNA–Protein interactions for RNA: ENST00000496447.5

PTPRF-215, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 5,887 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-215ENST00000496447 EGLN2Q96KS0 407 aa12.26□□□□□ -0.45
PTPRF-215ENST00000496447 SLC29A1Q99808 456 aa12.26□□□□□ -0.45
PTPRF-215ENST00000496447 GLTPQ9NZD2 209 aa12.26□□□□□ -0.45
PTPRF-215ENST00000496447 TESQ9UGI8 421 aaKnown RBP12.26□□□□□ -0.45
PTPRF-215ENST00000496447 INTS6Q9UL03 887 aaKnown RBP12.26□□□□□ -0.45
PTPRF-215ENST00000496447 PTH2RP49190 550 aa12.26□□□□□ -0.45
PTPRF-215ENST00000496447 CLVS2Q5SYC1 327 aa12.26□□□□□ -0.45
PTPRF-215ENST00000496447 TMEM244Q5VVB8 128 aa12.26□□□□□ -0.45
PTPRF-215ENST00000496447 GPR139Q6DWJ6 353 aa12.26□□□□□ -0.45
PTPRF-215ENST00000496447 SFRP4Q6FHJ7 346 aaPredicted RBP12.26□□□□□ -0.45
PTPRF-215ENST00000496447 PXKQ7Z7A4 578 aa12.26□□□□□ -0.45
PTPRF-215ENST00000496447 WDSUB1Q8N9V3 476 aa12.26□□□□□ -0.45
PTPRF-215ENST00000496447 TMEM178AQ8NBL3 297 aa12.26□□□□□ -0.45
PTPRF-215ENST00000496447 FOXN4Q96NZ1 517 aa12.26□□□□□ -0.45
PTPRF-215ENST00000496447 GPR45Q9Y5Y3 372 aa12.26□□□□□ -0.45
PTPRF-215ENST00000496447 SULT1C2O00338 296 aa12.26□□□□□ -0.45
PTPRF-215ENST00000496447 CDK2P24941 298 aa12.26□□□□□ -0.45
PTPRF-215ENST00000496447 CHRNB4P30926 498 aa12.26□□□□□ -0.45
PTPRF-215ENST00000496447 OR1D5P58170 312 aa12.26□□□□□ -0.45
PTPRF-215ENST00000496447 CFAP77Q6ZQR2 320 aa12.26□□□□□ -0.45
PTPRF-215ENST00000496447 SLC16A14Q7RTX9 510 aa12.26□□□□□ -0.45
PTPRF-215ENST00000496447 TECPR1Q7Z6L1 1165 aa12.26□□□□□ -0.45
PTPRF-215ENST00000496447 OR5D14Q8NGL3 314 aa12.26□□□□□ -0.45
PTPRF-215ENST00000496447 SAP130Q9H0E3 1048 aa12.26□□□□□ -0.45
PTPRF-215ENST00000496447 ZNF223Q9UK11 482 aaPredicted RBP12.26□□□□□ -0.45
PTPRF-215ENST00000496447 RHBDD3Q9Y3P4 386 aa12.26□□□□□ -0.45
PTPRF-215ENST00000496447 WIF1Q9Y5W5 379 aa12.26□□□□□ -0.45
PTPRF-215ENST00000496447 SUSD5O60279 629 aa12.26□□□□□ -0.45
PTPRF-215ENST00000496447 TUBG1P23258 451 aa12.26□□□□□ -0.45
PTPRF-215ENST00000496447 CD34P28906 385 aa12.26□□□□□ -0.45
PTPRF-215ENST00000496447 PSMB10P40306 273 aa12.26□□□□□ -0.45
PTPRF-215ENST00000496447 SLC22A10Q63ZE4 541 aa12.26□□□□□ -0.45
PTPRF-215ENST00000496447 PAPD4Q6PIY7 484 aaKnown RBP12.26□□□□□ -0.45
PTPRF-215ENST00000496447 TMEM150AQ86TG1 271 aa12.26□□□□□ -0.45
PTPRF-215ENST00000496447 G3V3Y1 287 aa12.26□□□□□ -0.45
PTPRF-215ENST00000496447 IFNA1P01562 189 aa12.26□□□□□ -0.45
PTPRF-215ENST00000496447 PDGFAP04085 211 aa12.26□□□□□ -0.45
PTPRF-215ENST00000496447 PRSS3P35030 304 aa12.26□□□□□ -0.45
PTPRF-215ENST00000496447 SF3A2Q15428 464 aaKnown RBP12.26□□□□□ -0.45
PTPRF-215ENST00000496447 PROX2Q3B8N5 592 aa12.26□□□□□ -0.45
PTPRF-215ENST00000496447 KRBOX4Q5JUW0 171 aa12.26□□□□□ -0.45
PTPRF-215ENST00000496447 MRPL2Q5T653 305 aaKnown RBP12.26□□□□□ -0.45
PTPRF-215ENST00000496447 VASNQ6EMK4 673 aa12.26□□□□□ -0.45
PTPRF-215ENST00000496447 KIAA0907Q7Z7F0 614 aaPredicted RBP12.26□□□□□ -0.45
PTPRF-215ENST00000496447 DUSP19Q8WTR2 217 aa12.26□□□□□ -0.45
PTPRF-215ENST00000496447 PBX4Q9BYU1 374 aa12.26□□□□□ -0.45
PTPRF-215ENST00000496447 PLEKHA3Q9HB20 300 aa12.26□□□□□ -0.45
PTPRF-215ENST00000496447 NTN4Q9HB63 628 aa12.26□□□□□ -0.45
PTPRF-215ENST00000496447 F10P00742 488 aa12.25□□□□□ -0.45
PTPRF-215ENST00000496447 KNG1P01042 644 aa12.25□□□□□ -0.45
PTPRF-215ENST00000496447 ETV4P43268 484 aa12.25□□□□□ -0.45
PTPRF-215ENST00000496447 MS4A2Q01362 244 aa12.25□□□□□ -0.45
PTPRF-215ENST00000496447 PODNL1Q6PEZ8 512 aa12.25□□□□□ -0.45
PTPRF-215ENST00000496447 VHLLQ6RSH7 139 aa12.25□□□□□ -0.45
PTPRF-215ENST00000496447 OR2T35Q8NGX2 323 aa12.25□□□□□ -0.45
PTPRF-215ENST00000496447 CPT1CQ8TCG5 803 aa12.25□□□□□ -0.45
PTPRF-215ENST00000496447 C3orf30Q96M34 536 aa12.25□□□□□ -0.45
PTPRF-215ENST00000496447 AMDHD1Q96NU7 426 aa12.25□□□□□ -0.45
PTPRF-215ENST00000496447 ST6GALNAC5Q9BVH7 336 aa12.25□□□□□ -0.45
PTPRF-215ENST00000496447 ATP13A2Q9NQ11 1180 aa12.25□□□□□ -0.45
PTPRF-215ENST00000496447 KDM4EB2RXH2 506 aaPredicted RBP12.25□□□□□ -0.45
PTPRF-215ENST00000496447 GYPBP06028 91 aa12.25□□□□□ -0.45
PTPRF-215ENST00000496447 EPHA1P21709 976 aa12.25□□□□□ -0.45
PTPRF-215ENST00000496447 GABRR1P24046 479 aa12.25□□□□□ -0.45
PTPRF-215ENST00000496447 HBA1P69905 142 aa12.25□□□□□ -0.45
PTPRF-215ENST00000496447 SMAD4Q13485 552 aaKnown RBP12.25□□□□□ -0.45
PTPRF-215ENST00000496447 ZNF77Q15935 545 aa12.25□□□□□ -0.45
PTPRF-215ENST00000496447 C14orf28Q4W4Y0 310 aa12.25□□□□□ -0.45
PTPRF-215ENST00000496447 MISPQ8IVT2 679 aa12.25□□□□□ -0.45
PTPRF-215ENST00000496447 ZADH2Q8N4Q0 377 aa12.25□□□□□ -0.45
PTPRF-215ENST00000496447 IL17RDQ8NFM7 739 aa12.25□□□□□ -0.45
PTPRF-215ENST00000496447 RAB39BQ96DA2 213 aa12.25□□□□□ -0.45
PTPRF-215ENST00000496447 CNTNAP3BQ96NU0 1288 aa12.25□□□□□ -0.45
PTPRF-215ENST00000496447 VN1R3Q9BXE9 311 aa12.25□□□□□ -0.45
PTPRF-215ENST00000496447 CACNG6Q9BXT2 260 aa12.25□□□□□ -0.45
PTPRF-215ENST00000496447 THSD1Q9NS62 852 aa12.25□□□□□ -0.45
PTPRF-215ENST00000496447 NUBP2Q9Y5Y2 271 aa12.25□□□□□ -0.45
PTPRF-215ENST00000496447 CXCR4P61073 352 aa12.25□□□□□ -0.45
PTPRF-215ENST00000496447 REEP5Q00765 189 aa12.25□□□□□ -0.45
PTPRF-215ENST00000496447 MC2RQ01718 297 aa12.25□□□□□ -0.45
PTPRF-215ENST00000496447 GPR19Q15760 415 aa12.25□□□□□ -0.45
PTPRF-215ENST00000496447 GGTA1PQ4G0N0 100 aa12.25□□□□□ -0.45
PTPRF-215ENST00000496447 MOB3CQ70IA8 216 aa12.25□□□□□ -0.45
PTPRF-215ENST00000496447 LRRC18Q8N456 261 aa12.25□□□□□ -0.45
PTPRF-215ENST00000496447 ARL11Q969Q4 196 aa12.25□□□□□ -0.45
PTPRF-215ENST00000496447 ZNF775Q96BV0 537 aaPredicted RBP12.25□□□□□ -0.45
PTPRF-215ENST00000496447 SLC6A20Q9NP91 592 aa12.25□□□□□ -0.45
PTPRF-215ENST00000496447 CD300AQ9UGN4 299 aa12.25□□□□□ -0.45
PTPRF-215ENST00000496447 ZBTB32Q9Y2Y4 487 aaPredicted RBP12.25□□□□□ -0.45
PTPRF-215ENST00000496447 AK6Q9Y3D8 172 aaKnown RBP12.25□□□□□ -0.45
PTPRF-215ENST00000496447 LOC105369274A0A096LPK9 316 aa12.25□□□□□ -0.45
PTPRF-215ENST00000496447 HHLA1C9JL84 531 aa12.25□□□□□ -0.45
PTPRF-215ENST00000496447 HOXC11O43248 304 aaPredicted RBP12.25□□□□□ -0.45
PTPRF-215ENST00000496447 DDAH2O95865 285 aa12.25□□□□□ -0.45
PTPRF-215ENST00000496447 ZNF44P15621 663 aa12.25□□□□□ -0.45
PTPRF-215ENST00000496447 SPCS2Q15005 226 aa12.25□□□□□ -0.45
PTPRF-215ENST00000496447 NKPD1Q17RQ9 610 aa12.25□□□□□ -0.45
PTPRF-215ENST00000496447 LINC00299Q6ZSB3 139 aa12.25□□□□□ -0.45
PTPRF-215ENST00000496447 AAED1Q7RTV5 226 aa12.25□□□□□ -0.45
PTPRF-215ENST00000496447 OR4N4Q8N0Y3 316 aa12.25□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms