RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 C4orf36Q96KX1 117 aa15.25■□□□□ 0.03
CCDC88B-210ENST00000494566 NKX3-1Q99801 234 aaPredicted RBP15.25■□□□□ 0.03
CCDC88B-210ENST00000494566 GSDMCQ9BYG8 508 aa15.25■□□□□ 0.03
CCDC88B-210ENST00000494566 LRRN3Q9H3W5 708 aa15.25■□□□□ 0.03
CCDC88B-210ENST00000494566 C2orf42Q9NWW7 574 aa15.25■□□□□ 0.03
CCDC88B-210ENST00000494566 NTMQ9P121 344 aa15.25■□□□□ 0.03
CCDC88B-210ENST00000494566 MSRAQ9UJ68 235 aa15.25■□□□□ 0.03
CCDC88B-210ENST00000494566 TRAPPC13A5PLN9 417 aa15.25■□□□□ 0.03
CCDC88B-210ENST00000494566 SEMA4FO95754 770 aa15.25■□□□□ 0.03
CCDC88B-210ENST00000494566 C1QBP02746 253 aa15.25■□□□□ 0.03
CCDC88B-210ENST00000494566 PRR23CQ6ZRP0 262 aa15.25■□□□□ 0.03
CCDC88B-210ENST00000494566 GJD3Q8N144 294 aa15.25■□□□□ 0.03
CCDC88B-210ENST00000494566 CA13Q8N1Q1 262 aa15.25■□□□□ 0.03
CCDC88B-210ENST00000494566 AVL9Q8NBF6 648 aa15.25■□□□□ 0.03
CCDC88B-210ENST00000494566 RLN3Q8WXF3 142 aa15.25■□□□□ 0.03
CCDC88B-210ENST00000494566 AUNIPQ9H7T9 357 aa15.25■□□□□ 0.03
CCDC88B-210ENST00000494566 NLGN3Q9NZ94 848 aa15.25■□□□□ 0.03
CCDC88B-210ENST00000494566 DTX4Q9Y2E6 619 aa15.25■□□□□ 0.03
CCDC88B-210ENST00000494566 AK6Q9Y3D8 172 aaKnown RBP15.25■□□□□ 0.03
CCDC88B-210ENST00000494566 CDHR4A6H8M9 788 aa15.24■□□□□ 0.03
CCDC88B-210ENST00000494566 C2orf74A8MZ97 194 aa15.24■□□□□ 0.03
CCDC88B-210ENST00000494566 B4DGG1 531 aa15.24■□□□□ 0.03
CCDC88B-210ENST00000494566 HCN1O60741 890 aa15.24■□□□□ 0.03
CCDC88B-210ENST00000494566 GPR75O95800 540 aa15.24■□□□□ 0.03
CCDC88B-210ENST00000494566 FAM157BP0CG42 384 aa15.24■□□□□ 0.03
CCDC88B-210ENST00000494566 NID1P14543 1247 aa15.24■□□□□ 0.03
CCDC88B-210ENST00000494566 AKT2P31751 481 aa15.24■□□□□ 0.03
CCDC88B-210ENST00000494566 EMDP50402 254 aa15.24■□□□□ 0.03
CCDC88B-210ENST00000494566 ZNF655Q8N720 491 aaPredicted RBP15.24■□□□□ 0.03
CCDC88B-210ENST00000494566 OR5J2Q8NH18 312 aa15.24■□□□□ 0.03
CCDC88B-210ENST00000494566 CEP76Q8TAP6 659 aa15.24■□□□□ 0.03
CCDC88B-210ENST00000494566 RFKQ969G6 155 aa15.24■□□□□ 0.03
CCDC88B-210ENST00000494566 MEPEQ9NQ76 525 aaPredicted RBP15.24■□□□□ 0.03
CCDC88B-210ENST00000494566 ZNF346Q9UL40 294 aaKnown RBP15.24■□□□□ 0.03
CCDC88B-210ENST00000494566 A0A0A6YYC8 382 aaPredicted RBP15.24■□□□□ 0.03
CCDC88B-210ENST00000494566 I3L1I5 382 aaPredicted RBP15.24■□□□□ 0.03
CCDC88B-210ENST00000494566 I3L521 148 aa15.24■□□□□ 0.03
CCDC88B-210ENST00000494566 HLA-DMAP28067 261 aa15.24■□□□□ 0.03
CCDC88B-210ENST00000494566 PSMB10P40306 273 aa15.24■□□□□ 0.03
CCDC88B-210ENST00000494566 MGAT2Q10469 447 aa15.24■□□□□ 0.03
CCDC88B-210ENST00000494566 SF3A2Q15428 464 aaKnown RBP15.24■□□□□ 0.03
CCDC88B-210ENST00000494566 MZT2AQ6P582 158 aa15.24■□□□□ 0.03
CCDC88B-210ENST00000494566 OR5W2Q8NH69 310 aa15.24■□□□□ 0.03
CCDC88B-210ENST00000494566 HEATR5AQ86XA9 2040 aa15.24■□□□□ 0.03
CCDC88B-210ENST00000494566 CHP2O43745 196 aa15.23■□□□□ 0.03
CCDC88B-210ENST00000494566 OR10H2O60403 315 aa15.23■□□□□ 0.03
CCDC88B-210ENST00000494566 GALR3O60755 368 aaPredicted RBP15.23■□□□□ 0.03
CCDC88B-210ENST00000494566 ADRB1P08588 477 aa15.23■□□□□ 0.03
CCDC88B-210ENST00000494566 HTR1FP30939 366 aa15.23■□□□□ 0.03
CCDC88B-210ENST00000494566 ZNF81P51508 661 aa15.23■□□□□ 0.03
CCDC88B-210ENST00000494566 CRYZQ08257 329 aaKnown RBP15.23■□□□□ 0.03
CCDC88B-210ENST00000494566 FAM53BQ14153 422 aa15.23■□□□□ 0.03
CCDC88B-210ENST00000494566 TCTE3Q8IZS6 198 aa15.23■□□□□ 0.03
CCDC88B-210ENST00000494566 ANKRD9Q96BM1 317 aaPredicted RBP15.23■□□□□ 0.03
CCDC88B-210ENST00000494566 ZMYND19Q96E35 227 aaPredicted RBP15.23■□□□□ 0.03
CCDC88B-210ENST00000494566 CD180Q99467 661 aa15.23■□□□□ 0.03
CCDC88B-210ENST00000494566 SLC25A18Q9H1K4 315 aa15.23■□□□□ 0.03
CCDC88B-210ENST00000494566 ANKRD19PQ9H560 264 aa15.23■□□□□ 0.03
CCDC88B-210ENST00000494566 ZNF223Q9UK11 482 aaPredicted RBP15.23■□□□□ 0.03
CCDC88B-210ENST00000494566 SSNA1O43805 119 aa15.23■□□□□ 0.03
CCDC88B-210ENST00000494566 GMFGO60234 142 aa15.23■□□□□ 0.03
CCDC88B-210ENST00000494566 GATBO75879 557 aaKnown RBP15.23■□□□□ 0.03
CCDC88B-210ENST00000494566 CBX7O95931 251 aa15.23■□□□□ 0.03
CCDC88B-210ENST00000494566 IGHV4-34P06331 123 aa15.23■□□□□ 0.03
CCDC88B-210ENST00000494566 ANKRD34CP0C6C1 535 aa15.23■□□□□ 0.03
CCDC88B-210ENST00000494566 ZNF267Q14586 743 aaPredicted RBP15.23■□□□□ 0.03
CCDC88B-210ENST00000494566 FAM109AQ8N4B1 249 aa15.23■□□□□ 0.03
CCDC88B-210ENST00000494566 ACBD7Q8N6N7 88 aa15.23■□□□□ 0.03
CCDC88B-210ENST00000494566 LRRC17Q8N6Y2 441 aa15.23■□□□□ 0.03
CCDC88B-210ENST00000494566 BPIFA2Q96DR5 249 aa15.23■□□□□ 0.03
CCDC88B-210ENST00000494566 PEX11GQ96HA9 241 aa15.23■□□□□ 0.03
CCDC88B-210ENST00000494566 MARVELD1Q9BSK0 173 aa15.23■□□□□ 0.03
CCDC88B-210ENST00000494566 FKRPQ9H9S5 495 aa15.23■□□□□ 0.03
CCDC88B-210ENST00000494566 BRD7Q9NPI1 651 aa15.23■□□□□ 0.03
CCDC88B-210ENST00000494566 EIF3KQ9UBQ5 218 aaKnown RBP15.23■□□□□ 0.03
CCDC88B-210ENST00000494566 PPIEQ9UNP9 301 aaKnown RBP15.23■□□□□ 0.03
CCDC88B-210ENST00000494566 IDSB3KWA1 339 aa15.23■□□□□ 0.03
CCDC88B-210ENST00000494566 TGFBR3LH3BV60 316 aa15.23■□□□□ 0.03
CCDC88B-210ENST00000494566 LYPD3O95274 346 aa15.23■□□□□ 0.03
CCDC88B-210ENST00000494566 PPP1R3DO95685 299 aa15.23■□□□□ 0.03
CCDC88B-210ENST00000494566 TNFP01375 233 aa15.23■□□□□ 0.03
CCDC88B-210ENST00000494566 IGKV1D-16P01601 117 aa15.23■□□□□ 0.03
CCDC88B-210ENST00000494566 ATP1B1P05026 303 aa15.23■□□□□ 0.03
CCDC88B-210ENST00000494566 DBIP07108 87 aaKnown RBP15.23■□□□□ 0.03
CCDC88B-210ENST00000494566 NGFRP08138 427 aa15.23■□□□□ 0.03
CCDC88B-210ENST00000494566 HOXC4P09017 264 aaPredicted RBP15.23■□□□□ 0.03
CCDC88B-210ENST00000494566 ZNF10P21506 573 aaPredicted RBP15.23■□□□□ 0.03
CCDC88B-210ENST00000494566 EIF2B5Q13144 721 aaKnown RBP15.23■□□□□ 0.03
CCDC88B-210ENST00000494566 ODF4Q2M2E3 257 aa15.23■□□□□ 0.03
CCDC88B-210ENST00000494566 EIPR1Q53HC9 387 aa15.23■□□□□ 0.03
CCDC88B-210ENST00000494566 SIAH3Q8IW03 269 aa15.23■□□□□ 0.03
CCDC88B-210ENST00000494566 C9orf62Q8N4C0 152 aa15.23■□□□□ 0.03
CCDC88B-210ENST00000494566 ZNF433Q8N7K0 673 aaPredicted RBP15.23■□□□□ 0.03
CCDC88B-210ENST00000494566 CDRT4Q8N9R6 151 aa15.23■□□□□ 0.03
CCDC88B-210ENST00000494566 DNAJA4Q8WW22 397 aaPredicted RBP15.23■□□□□ 0.03
CCDC88B-210ENST00000494566 WDR89Q96FK6 387 aaPredicted RBP15.23■□□□□ 0.03
CCDC88B-210ENST00000494566 HS6ST2Q96MM7 605 aa15.23■□□□□ 0.03
CCDC88B-210ENST00000494566 TEX12Q9BXU0 123 aa15.23■□□□□ 0.03
CCDC88B-210ENST00000494566 SCML1Q9UN30 329 aa15.23■□□□□ 0.03
CCDC88B-210ENST00000494566 TEX13CA0A0J9YWL9 993 aa15.22■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms