RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 PITPNBP48739 271 aa9.99□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 WNT3P56703 355 aa9.99□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 SKP1P63208 163 aa9.99□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 ABHD17CQ6PCB6 329 aa9.99□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 ADGRF3Q8IZF5 1079 aa9.99□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 ZFP82Q8N141 532 aa9.99□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 CLDN22Q8N7P3 220 aa9.99□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 OR6T1Q8NGN1 323 aa9.99□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 TCTEX1D2Q8WW35 142 aa9.99□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 SGPP1Q9BX95 441 aa9.99□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 C1QTNF6Q9BXI9 259 aa9.99□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 EGLN3Q9H6Z9 239 aa9.99□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 ERVK-19Q9WJR5 959 aa9.99□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 MRPS2Q9Y399 296 aaKnown RBP9.99□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 ENPP4Q9Y6X5 453 aa9.99□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 TMEM150CB9EJG8 249 aa9.99□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 F5H0A9 414 aaPredicted RBP9.99□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 EMC8O43402 210 aa9.99□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 DNAJB6O75190 326 aa9.99□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 SCG5P05408 212 aa9.99□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 ZNF3P17036 446 aa9.99□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 WNT4P56705 351 aa9.99□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 TDGQ13569 410 aa9.99□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 ELOCQ15369 112 aa9.99□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 NDUFA9Q16795 377 aa9.99□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 FAM76BQ5HYJ3 339 aa9.99□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 TMPRSS9Q7Z410 1059 aa9.99□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 PLPP6Q8IY26 295 aa9.99□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 NLGN4YQ8NFZ3 816 aaPredicted RBP9.99□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 GIMAP1Q8WWP7 306 aa9.99□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 ACOT12Q8WYK0 555 aa9.99□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 MRPL48Q96GC5 212 aaKnown RBP9.99□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 BMFQ96LC9 184 aa9.99□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 AMDHD1Q96NU7 426 aa9.99□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 DPH1Q9BZG8 443 aa9.99□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 DNTTIP1Q9H147 329 aa9.99□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 UBE2ZQ9H832 354 aaPredicted RBP9.99□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 SLC6A20Q9NP91 592 aa9.99□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 PRTFDC1Q9NRG1 225 aa9.99□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 LRIT1Q9P2V4 623 aa9.99□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 TMEFF2Q9UIK5 374 aaPredicted RBP9.99□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 KCNE1BA0A087WTH5 132 aa9.98□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 M0R036 132 aa9.98□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 TO15178 435 aa9.98□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 PIP5K1CO60331 668 aa9.98□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 CDC40O60508 579 aaKnown RBP eCLIP9.98□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 NCR1O76036 304 aa9.98□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 LINC00271P0C7V0 271 aa9.98□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 GPX2P18283 190 aa9.98□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 ITGA3P26006 1051 aa9.98□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 OCLNQ16625 522 aa9.98□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 MICAQ29983 383 aa9.98□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 ZNF765Q7L2R6 523 aa9.98□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 PAQR7Q86WK9 346 aa9.98□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 LNX2Q8N448 690 aa9.98□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 LINC00469Q8N7U9 141 aa9.98□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 INO80EQ8NBZ0 244 aaPredicted RBP9.98□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 PROKR2Q8NFJ6 384 aa9.98□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 OR52E4Q8NGH9 312 aa9.98□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 BBS10Q8TAM1 723 aa9.98□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 MS4A6EQ96DS6 147 aa9.98□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 CNRIP1Q96F85 164 aaPredicted RBP9.98□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 FCRL1Q96LA6 429 aa9.98□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 DDOQ99489 341 aa9.98□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 EPYCQ99645 322 aa9.98□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 C8orf33Q9H7E9 229 aaPredicted RBP9.98□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 FBXL2Q9UKC9 423 aa9.98□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 ACACAQ13085 2346 aa9.98□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 PRRC2CQ9Y520 2896 aaKnown RBP9.98□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 IGHV3-20A0A0C4DH32 117 aa9.98□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 C2orf72A6NCS6 295 aa9.98□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 C11orf98E9PRG8 122 aa9.98□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 CTSVO60911 334 aa9.98□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 RPP14O95059 124 aaKnown RBP9.98□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 ROS1P08922 2347 aa9.98□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 FCARP24071 287 aa9.98□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 KIR2DL1P43626 348 aaPredicted RBP9.98□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 RABIFP47224 123 aa9.98□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 RPS15AP62244 130 aaKnown RBP9.98□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 NSDHLQ15738 373 aa9.98□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 NLRC3Q7RTR2 1065 aa9.98□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 SSX9Q7RTT3 188 aa9.98□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 HLA-CQ95604 372 aa9.98□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 CPNE2Q96FN4 548 aaPredicted RBP9.98□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 MFFQ9GZY8 342 aa9.98□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 C14orf105Q9NVL8 296 aa9.98□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 TMEM45AQ9NWC5 275 aa9.98□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 SIRT5Q9NXA8 310 aa9.98□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 CLEC2DQ9UHP7 191 aa9.98□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 ZNF236Q9UL36 1845 aa9.98□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 EXOSC1Q9Y3B2 195 aaKnown RBP9.98□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 CLEC3AO75596 197 aa9.98□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 OR6A2O95222 327 aa9.98□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 RD3LP0DJH9 198 aa9.98□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 IL9P15248 144 aa9.98□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 PCSK2P16519 638 aa9.98□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 FUT1P19526 365 aa9.98□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 NAA10P41227 235 aaPredicted RBP9.98□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 ARRB1P49407 418 aaPredicted RBP9.98□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 TNFRSF17Q02223 184 aa9.98□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 54.6 ms