RNA–Protein interactions for RNA: ENST00000490398.5

COL9A3-214, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 4

Gene COL9A3, Length 496 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-214ENST00000490398 TMED7Q9Y3B3 224 aa16.14■□□□□ 0.17
COL9A3-214ENST00000490398 MPDZO75970 2070 aa16.14■□□□□ 0.17
COL9A3-214ENST00000490398 RAMP1O60894 148 aa16.13■□□□□ 0.17
COL9A3-214ENST00000490398 GNA13Q14344 377 aa16.13■□□□□ 0.17
COL9A3-214ENST00000490398 GCNT6Q5T4J0 391 aa16.13■□□□□ 0.17
COL9A3-214ENST00000490398 RNF220Q5VTB9 566 aa16.13■□□□□ 0.17
COL9A3-214ENST00000490398 SERPINA11Q86U17 422 aa16.13■□□□□ 0.17
COL9A3-214ENST00000490398 KLHL4Q9C0H6 718 aa16.13■□□□□ 0.17
COL9A3-214ENST00000490398 ADAM19Q9H013 955 aa16.13■□□□□ 0.17
COL9A3-214ENST00000490398 RAD21L1Q9H4I0 556 aa16.13■□□□□ 0.17
COL9A3-214ENST00000490398 GLRX2Q9NS18 164 aa16.13■□□□□ 0.17
COL9A3-214ENST00000490398 ELOVL5Q9NYP7 299 aa16.13■□□□□ 0.17
COL9A3-214ENST00000490398 KLHL13Q9P2N7 655 aa16.13■□□□□ 0.17
COL9A3-214ENST00000490398 LEF1Q9UJU2 399 aaPredicted RBP16.13■□□□□ 0.17
COL9A3-214ENST00000490398 NDUFAF1Q9Y375 327 aa16.13■□□□□ 0.17
COL9A3-214ENST00000490398 GMEB1Q9Y692 573 aa16.13■□□□□ 0.17
COL9A3-214ENST00000490398 SULT2B1O00204 365 aa16.12■□□□□ 0.17
COL9A3-214ENST00000490398 FAAHO00519 579 aa16.12■□□□□ 0.17
COL9A3-214ENST00000490398 FBP2O00757 339 aa16.12■□□□□ 0.17
COL9A3-214ENST00000490398 TPST1O60507 370 aa16.12■□□□□ 0.17
COL9A3-214ENST00000490398 CYTIPO60759 359 aa16.12■□□□□ 0.17
COL9A3-214ENST00000490398 PRKD3O94806 890 aa16.12■□□□□ 0.17
COL9A3-214ENST00000490398 HRGP04196 525 aa16.12■□□□□ 0.17
COL9A3-214ENST00000490398 THBS1P07996 1170 aa16.12■□□□□ 0.17
COL9A3-214ENST00000490398 VIMP08670 466 aaKnown RBP16.12■□□□□ 0.17
COL9A3-214ENST00000490398 PABPC4LP0CB38 370 aaKnown RBP16.12■□□□□ 0.17
COL9A3-214ENST00000490398 IMPDH2P12268 514 aa16.12■□□□□ 0.17
COL9A3-214ENST00000490398 GPX2P18283 190 aa16.12■□□□□ 0.17
COL9A3-214ENST00000490398 DNAJA1P31689 397 aaKnown RBP16.12■□□□□ 0.17
COL9A3-214ENST00000490398 SLC1A3P43003 542 aa16.12■□□□□ 0.17
COL9A3-214ENST00000490398 MTPNP58546 118 aa16.12■□□□□ 0.17
COL9A3-214ENST00000490398 IRX1P78414 480 aaPredicted RBP16.12■□□□□ 0.17
COL9A3-214ENST00000490398 RNPS1Q15287 305 aaKnown RBP16.12■□□□□ 0.17
COL9A3-214ENST00000490398 TSC22D1Q15714 1073 aa16.12■□□□□ 0.17
COL9A3-214ENST00000490398 GLIPR1L2Q4G1C9 344 aa16.12■□□□□ 0.17
COL9A3-214ENST00000490398 ZNF311Q5JNZ3 666 aa16.12■□□□□ 0.17
COL9A3-214ENST00000490398 TFAP2EQ6VUC0 442 aa16.12■□□□□ 0.17
COL9A3-214ENST00000490398 STAC2Q6ZMT1 411 aa16.12■□□□□ 0.17
COL9A3-214ENST00000490398 DHDDSQ86SQ9 333 aa16.12■□□□□ 0.17
COL9A3-214ENST00000490398 PTOV1Q86YD1 416 aa16.12■□□□□ 0.17
COL9A3-214ENST00000490398 DPP10Q8N608 796 aa16.12■□□□□ 0.17
COL9A3-214ENST00000490398 BBS10Q8TAM1 723 aa16.12■□□□□ 0.17
COL9A3-214ENST00000490398 ZC3HAV1LQ96H79 300 aaKnown RBP16.12■□□□□ 0.17
COL9A3-214ENST00000490398 REXO5Q96IC2 774 aaKnown RBP16.12■□□□□ 0.17
COL9A3-214ENST00000490398 SIKE1Q9BRV8 207 aa16.12■□□□□ 0.17
COL9A3-214ENST00000490398 SLC39A3Q9BRY0 314 aa16.12■□□□□ 0.17
COL9A3-214ENST00000490398 PRR14Q9BWN1 585 aa16.12■□□□□ 0.17
COL9A3-214ENST00000490398 SPATA9Q9BWV2 254 aa16.12■□□□□ 0.17
COL9A3-214ENST00000490398 RABEP2Q9H5N1 569 aa16.12■□□□□ 0.17
COL9A3-214ENST00000490398 THUMPD1Q9NXG2 353 aaKnown RBP16.12■□□□□ 0.17
COL9A3-214ENST00000490398 C6orf203Q9P0P8 240 aaPredicted RBP16.12■□□□□ 0.17
COL9A3-214ENST00000490398 TRIM33Q9UPN9 1127 aa16.12■□□□□ 0.17
COL9A3-214ENST00000490398 AKAP6Q13023 2319 aa16.11■□□□□ 0.17
COL9A3-214ENST00000490398 C16orf97H3BN30 126 aa16.11■□□□□ 0.17
COL9A3-214ENST00000490398 THBDP07204 575 aa16.11■□□□□ 0.17
COL9A3-214ENST00000490398 YES1P07947 543 aa16.11■□□□□ 0.17
COL9A3-214ENST00000490398 NTF4P34130 210 aa16.11■□□□□ 0.17
COL9A3-214ENST00000490398 PCYT1AP49585 367 aa16.11■□□□□ 0.17
COL9A3-214ENST00000490398 POLR2HP52434 150 aaKnown RBP16.11■□□□□ 0.17
COL9A3-214ENST00000490398 ARFIP2P53365 341 aa16.11■□□□□ 0.17
COL9A3-214ENST00000490398 CDK6Q00534 326 aa16.11■□□□□ 0.17
COL9A3-214ENST00000490398 RASGEF1BQ0VAM2 473 aa16.11■□□□□ 0.17
COL9A3-214ENST00000490398 BNIP2Q12982 314 aa16.11■□□□□ 0.17
COL9A3-214ENST00000490398 CAPRIN1Q14444 709 aaKnown RBP16.11■□□□□ 0.17
COL9A3-214ENST00000490398 LARS2Q15031 903 aaKnown RBP16.11■□□□□ 0.17
COL9A3-214ENST00000490398 TMEM201Q5SNT2 666 aa16.11■□□□□ 0.17
COL9A3-214ENST00000490398 GTF2IRD2BQ6EKJ0 949 aa16.11■□□□□ 0.17
COL9A3-214ENST00000490398 GTF2IRD2Q86UP8 949 aa16.11■□□□□ 0.17
COL9A3-214ENST00000490398 CCDC103Q8IW40 242 aa16.11■□□□□ 0.17
COL9A3-214ENST00000490398 CADM2Q8N3J6 435 aa16.11■□□□□ 0.17
COL9A3-214ENST00000490398 SLC25A43Q8WUT9 341 aaPredicted RBP16.11■□□□□ 0.17
COL9A3-214ENST00000490398 WFDC6Q9BQY6 131 aa16.11■□□□□ 0.17
COL9A3-214ENST00000490398 BCO1Q9HAY6 547 aa16.11■□□□□ 0.17
COL9A3-214ENST00000490398 TMEM247A6NEH6 219 aa16.1■□□□□ 0.17
COL9A3-214ENST00000490398 ZNF716A6NP11 495 aa16.1■□□□□ 0.17
COL9A3-214ENST00000490398 DEFB108AA8MXU0 73 aa16.1■□□□□ 0.17
COL9A3-214ENST00000490398 C5orf58C9J3I9 102 aa16.1■□□□□ 0.17
COL9A3-214ENST00000490398 GCM2O75603 506 aaPredicted RBP16.1■□□□□ 0.17
COL9A3-214ENST00000490398 AQP1P29972 269 aa16.1■□□□□ 0.17
COL9A3-214ENST00000490398 OR2B6P58173 313 aa16.1■□□□□ 0.17
COL9A3-214ENST00000490398 PRAMEF8Q5VWM4 474 aa16.1■□□□□ 0.17
COL9A3-214ENST00000490398 PRAMEF7Q5VXH5 474 aa16.1■□□□□ 0.17
COL9A3-214ENST00000490398 METTL21CQ5VZV1 264 aa16.1■□□□□ 0.17
COL9A3-214ENST00000490398 ABLIM2Q6H8Q1 611 aa16.1■□□□□ 0.17
COL9A3-214ENST00000490398 ANKRD27Q96NW4 1050 aa16.1■□□□□ 0.17
COL9A3-214ENST00000490398 CGREF1Q99674 301 aa16.1■□□□□ 0.17
COL9A3-214ENST00000490398 CCDC134Q9H6E4 229 aa16.1■□□□□ 0.17
COL9A3-214ENST00000490398 SAR1AQ9NR31 198 aa16.1■□□□□ 0.17
COL9A3-214ENST00000490398 NDRG3Q9UGV2 375 aa16.1■□□□□ 0.17
COL9A3-214ENST00000490398 PRSS50Q9UI38 385 aa16.1■□□□□ 0.17
COL9A3-214ENST00000490398 SPIN1Q9Y657 262 aaPredicted RBP16.1■□□□□ 0.17
COL9A3-214ENST00000490398 ANGPT2O15123 496 aa16.09■□□□□ 0.17
COL9A3-214ENST00000490398 PMS2P2O95744 297 aa16.09■□□□□ 0.17
COL9A3-214ENST00000490398 TROVE2P10155 538 aaKnown RBP eCLIP16.09■□□□□ 0.17
COL9A3-214ENST00000490398 PPIBP23284 216 aaKnown RBP16.09■□□□□ 0.17
COL9A3-214ENST00000490398 HTR3AP46098 478 aa16.09■□□□□ 0.17
COL9A3-214ENST00000490398 KLF10Q13118 480 aa16.09■□□□□ 0.17
COL9A3-214ENST00000490398 SCARB2Q14108 478 aa16.09■□□□□ 0.17
COL9A3-214ENST00000490398 TESK1Q15569 626 aa16.09■□□□□ 0.17
COL9A3-214ENST00000490398 REEP3Q6NUK4 255 aa16.09■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms