RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 CCNB1IP1Q9NPC3 277 aa4.64□□□□□ -1.67
USP40-213ENST00000483216 HPS4Q9NQG7 708 aa4.64□□□□□ -1.67
USP40-213ENST00000483216 FBXO6Q9NRD1 293 aaPredicted RBP4.64□□□□□ -1.67
USP40-213ENST00000483216 AGPAT3Q9NRZ7 376 aa4.64□□□□□ -1.67
USP40-213ENST00000483216 C20orf96Q9NUD7 363 aaPredicted RBP4.64□□□□□ -1.67
USP40-213ENST00000483216 GDAP2Q9NXN4 497 aa4.64□□□□□ -1.67
USP40-213ENST00000483216 ATPIF1Q9UII2 106 aa4.64□□□□□ -1.67
USP40-213ENST00000483216 LEF1Q9UJU2 399 aaPredicted RBP4.64□□□□□ -1.67
USP40-213ENST00000483216 CAB39Q9Y376 341 aaPredicted RBP4.64□□□□□ -1.67
USP40-213ENST00000483216 ORC6Q9Y5N6 252 aa4.64□□□□□ -1.67
USP40-213ENST00000483216 C1orf232A0A0U1RR37 186 aa4.63□□□□□ -1.67
USP40-213ENST00000483216 TRIM64A6NGJ6 449 aa4.63□□□□□ -1.67
USP40-213ENST00000483216 SRRM4A7MD48 611 aaKnown RBP4.63□□□□□ -1.67
USP40-213ENST00000483216 CENPXA8MT69 81 aa4.63□□□□□ -1.67
USP40-213ENST00000483216 FAM25EA8MYX2 175 aa4.63□□□□□ -1.67
USP40-213ENST00000483216 APOC4-APOC2K7ER74 178 aa4.63□□□□□ -1.67
USP40-213ENST00000483216 HDAC3O15379 428 aa4.63□□□□□ -1.67
USP40-213ENST00000483216 STX7O15400 261 aaKnown RBP4.63□□□□□ -1.67
USP40-213ENST00000483216 AQP9O43315 295 aa4.63□□□□□ -1.67
USP40-213ENST00000483216 TRIM3O75382 744 aaPredicted RBP4.63□□□□□ -1.67
USP40-213ENST00000483216 TOM1L1O75674 476 aa4.63□□□□□ -1.67
USP40-213ENST00000483216 OR6B1O95007 311 aa4.63□□□□□ -1.67
USP40-213ENST00000483216 SNX4O95219 450 aa4.63□□□□□ -1.67
USP40-213ENST00000483216 IFNB1P01574 187 aa4.63□□□□□ -1.67
USP40-213ENST00000483216 APOC2P02655 101 aa4.63□□□□□ -1.67
USP40-213ENST00000483216 C8orf89P0DMQ9 161 aa4.63□□□□□ -1.67
USP40-213ENST00000483216 MBL2P11226 248 aaPredicted RBP4.63□□□□□ -1.67
USP40-213ENST00000483216 GLRA2P23416 452 aa4.63□□□□□ -1.67
USP40-213ENST00000483216 IL32P24001 234 aa4.63□□□□□ -1.67
USP40-213ENST00000483216 ADSSP30520 456 aa4.63□□□□□ -1.67
USP40-213ENST00000483216 SPRP35270 261 aaPredicted RBP4.63□□□□□ -1.67
USP40-213ENST00000483216 TUFMP49411 452 aaKnown RBP4.63□□□□□ -1.67
USP40-213ENST00000483216 NUDT2P50583 147 aa4.63□□□□□ -1.67
USP40-213ENST00000483216 HLCSP50747 726 aa4.63□□□□□ -1.67
USP40-213ENST00000483216 MYBPC1Q00872 1141 aa4.63□□□□□ -1.67
USP40-213ENST00000483216 ZNF45Q02386 682 aa4.63□□□□□ -1.67
USP40-213ENST00000483216 HSPA14Q0VDF9 509 aa4.63□□□□□ -1.67
USP40-213ENST00000483216 OVGP1Q12889 678 aa4.63□□□□□ -1.67
USP40-213ENST00000483216 TFDP1Q14186 410 aa4.63□□□□□ -1.67
USP40-213ENST00000483216 PDK2Q15119 407 aa4.63□□□□□ -1.67
USP40-213ENST00000483216 ANKDD1AQ495B1 522 aa4.63□□□□□ -1.67
USP40-213ENST00000483216 EPC2Q52LR7 807 aa4.63□□□□□ -1.67
USP40-213ENST00000483216 COQ5Q5HYK3 327 aa4.63□□□□□ -1.67
USP40-213ENST00000483216 MUC21Q5SSG8 566 aa4.63□□□□□ -1.67
USP40-213ENST00000483216 C6orf52Q5T4I8 152 aa4.63□□□□□ -1.67
USP40-213ENST00000483216 LPCAT4Q643R3 524 aa4.63□□□□□ -1.67
USP40-213ENST00000483216 DNAJC24Q6P3W2 148 aa4.63□□□□□ -1.67
USP40-213ENST00000483216 ZNF773Q6PK81 442 aa4.63□□□□□ -1.67
USP40-213ENST00000483216 IDO2Q6ZQW0 420 aa4.63□□□□□ -1.67
USP40-213ENST00000483216 PLEKHG7Q6ZR37 379 aa4.63□□□□□ -1.67
USP40-213ENST00000483216 TAS2R42Q7RTR8 314 aa4.63□□□□□ -1.67
USP40-213ENST00000483216 CEACAM19Q7Z692 300 aa4.63□□□□□ -1.67
USP40-213ENST00000483216 DHFR2Q86XF0 187 aa4.63□□□□□ -1.67
USP40-213ENST00000483216 HPS6Q86YV9 775 aa4.63□□□□□ -1.67
USP40-213ENST00000483216 KLHDC8AQ8IYD2 350 aa4.63□□□□□ -1.67
USP40-213ENST00000483216 TBC1D21Q8IYX1 336 aa4.63□□□□□ -1.67
USP40-213ENST00000483216 DHRSXQ8N5I4 330 aa4.63□□□□□ -1.67
USP40-213ENST00000483216 NKAIN3Q8N8D7 197 aa4.63□□□□□ -1.67
USP40-213ENST00000483216 NAT8LQ8N9F0 302 aa4.63□□□□□ -1.67
USP40-213ENST00000483216 ZNF555Q8NEP9 628 aa4.63□□□□□ -1.67
USP40-213ENST00000483216 OR1B1Q8NGR6 318 aa4.63□□□□□ -1.67
USP40-213ENST00000483216 GOT1L1Q8NHS2 421 aaPredicted RBP4.63□□□□□ -1.67
USP40-213ENST00000483216 SLC2A14Q8TDB8 520 aa4.63□□□□□ -1.67
USP40-213ENST00000483216 FCGR1BQ92637 280 aa4.63□□□□□ -1.67
USP40-213ENST00000483216 C12orf43Q96C57 262 aaKnown RBP4.63□□□□□ -1.67
USP40-213ENST00000483216 CENPNQ96H22 339 aaPredicted RBP4.63□□□□□ -1.67
USP40-213ENST00000483216 TNFRSF13CQ96RJ3 184 aa4.63□□□□□ -1.67
USP40-213ENST00000483216 SHCBP1LQ9BZQ2 653 aa4.63□□□□□ -1.67
USP40-213ENST00000483216 ING2Q9H160 280 aa4.63□□□□□ -1.67
USP40-213ENST00000483216 GOLPH3Q9H4A6 298 aa4.63□□□□□ -1.67
USP40-213ENST00000483216 MARCH7Q9H992 704 aa4.63□□□□□ -1.67
USP40-213ENST00000483216 ZC4H2Q9NQZ6 224 aa4.63□□□□□ -1.67
USP40-213ENST00000483216 PRR34Q9NV39 138 aa4.63□□□□□ -1.67
USP40-213ENST00000483216 TMEM161AQ9NX61 479 aa4.63□□□□□ -1.67
USP40-213ENST00000483216 MRPL39Q9NYK5 338 aaKnown RBP4.63□□□□□ -1.67
USP40-213ENST00000483216 GPR83Q9NYM4 423 aa4.63□□□□□ -1.67
USP40-213ENST00000483216 PHF11Q9UIL8 331 aa4.63□□□□□ -1.67
USP40-213ENST00000483216 NUP50Q9UKX7 468 aa4.63□□□□□ -1.67
USP40-213ENST00000483216 SPATA2Q9UM82 520 aa4.63□□□□□ -1.67
USP40-213ENST00000483216 ETV7Q9Y603 341 aa4.63□□□□□ -1.67
USP40-213ENST00000483216 ASTN1O14525 1302 aa4.63□□□□□ -1.67
USP40-213ENST00000483216 AGRNO00468 2067 aa4.63□□□□□ -1.67
USP40-213ENST00000483216 A0A087X0K7 114 aa4.62□□□□□ -1.67
USP40-213ENST00000483216 IGKV6D-41A0A0C4DH26 115 aa4.62□□□□□ -1.67
USP40-213ENST00000483216 TCRBV9S1A1TA0A576 114 aa4.62□□□□□ -1.67
USP40-213ENST00000483216 IGLON5A6NGN9 336 aa4.62□□□□□ -1.67
USP40-213ENST00000483216 RPL37AP8A6NKH3 93 aa4.62□□□□□ -1.67
USP40-213ENST00000483216 TRIM49D1C9J1S8 452 aa4.62□□□□□ -1.67
USP40-213ENST00000483216 LOC110117498-PIK3R3F6TDL0 507 aa4.62□□□□□ -1.67
USP40-213ENST00000483216 H3BMQ9 156 aa4.62□□□□□ -1.67
USP40-213ENST00000483216 K7EPI3 171 aa4.62□□□□□ -1.67
USP40-213ENST00000483216 BET1O15155 118 aa4.62□□□□□ -1.67
USP40-213ENST00000483216 CLOCKO15516 846 aa4.62□□□□□ -1.67
USP40-213ENST00000483216 CPNE6O95741 557 aa4.62□□□□□ -1.67
USP40-213ENST00000483216 CRYZL1O95825 349 aa4.62□□□□□ -1.67
USP40-213ENST00000483216 SLC16A8O95907 504 aa4.62□□□□□ -1.67
USP40-213ENST00000483216 RENP00797 406 aa4.62□□□□□ -1.67
USP40-213ENST00000483216 GP9P14770 177 aa4.62□□□□□ -1.67
USP40-213ENST00000483216 TPSB2P20231 275 aa4.62□□□□□ -1.67
USP40-213ENST00000483216 GCAP28676 217 aa4.62□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms