RNA–Protein interactions for RNA: ENST00000481409.1

USP39-215, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-215ENST00000481409 C3orf33Q6P1S2 294 aa9.22□□□□□ -0.93
USP39-215ENST00000481409 TBPL2Q6SJ96 375 aa9.22□□□□□ -0.93
USP39-215ENST00000481409 RASSF6Q6ZTQ3 369 aa9.22□□□□□ -0.93
USP39-215ENST00000481409 SLC22A16Q86VW1 577 aa9.22□□□□□ -0.93
USP39-215ENST00000481409 DHRSXQ8N5I4 330 aa9.22□□□□□ -0.93
USP39-215ENST00000481409 KDF1Q8NAX2 398 aaPredicted RBP9.22□□□□□ -0.93
USP39-215ENST00000481409 ZNF555Q8NEP9 628 aa9.22□□□□□ -0.93
USP39-215ENST00000481409 RNF217Q8TC41 542 aa9.22□□□□□ -0.93
USP39-215ENST00000481409 BPIFA2Q96DR5 249 aa9.22□□□□□ -0.93
USP39-215ENST00000481409 SIGLEC12Q96PQ1 595 aa9.22□□□□□ -0.93
USP39-215ENST00000481409 TEX12Q9BXU0 123 aa9.22□□□□□ -0.93
USP39-215ENST00000481409 GABARAPL3Q9BY60 117 aa9.22□□□□□ -0.93
USP39-215ENST00000481409 UCK2Q9BZX2 261 aa9.22□□□□□ -0.93
USP39-215ENST00000481409 OR2B2Q9GZK3 357 aa9.22□□□□□ -0.93
USP39-215ENST00000481409 ADNPQ9H2P0 1102 aa9.22□□□□□ -0.93
USP39-215ENST00000481409 UBQLN3Q9H347 655 aa9.22□□□□□ -0.93
USP39-215ENST00000481409 CTPS2Q9NRF8 586 aa9.22□□□□□ -0.93
USP39-215ENST00000481409 ANKRD10Q9NXR5 420 aa9.22□□□□□ -0.93
USP39-215ENST00000481409 CHRNA9Q9UGM1 479 aa9.22□□□□□ -0.93
USP39-215ENST00000481409 OSGIN1Q9UJX0 560 aa9.22□□□□□ -0.93
USP39-215ENST00000481409 DKKL1Q9UK85 242 aa9.22□□□□□ -0.93
USP39-215ENST00000481409 TRAV36DV7A0A075B6V5 113 aa9.21□□□□□ -0.94
USP39-215ENST00000481409 TMED7-TICAM2A0A0A6YYA0 188 aa9.21□□□□□ -0.94
USP39-215ENST00000481409 LRRC3CA6NJW4 275 aa9.21□□□□□ -0.94
USP39-215ENST00000481409 GNB5O14775 395 aa9.21□□□□□ -0.94
USP39-215ENST00000481409 SLC16A6O15403 523 aa9.21□□□□□ -0.94
USP39-215ENST00000481409 KLF4O43474 513 aa9.21□□□□□ -0.94
USP39-215ENST00000481409 FZD7O75084 574 aa9.21□□□□□ -0.94
USP39-215ENST00000481409 NPIPB7O75200 414 aa9.21□□□□□ -0.94
USP39-215ENST00000481409 GLSO94925 669 aaPredicted RBP9.21□□□□□ -0.94
USP39-215ENST00000481409 RCBTB2O95199 551 aa9.21□□□□□ -0.94
USP39-215ENST00000481409 GASTP01350 101 aa9.21□□□□□ -0.94
USP39-215ENST00000481409 HPNP05981 417 aa9.21□□□□□ -0.94
USP39-215ENST00000481409 OSMP13725 252 aa9.21□□□□□ -0.94
USP39-215ENST00000481409 PRKACGP22612 351 aa9.21□□□□□ -0.94
USP39-215ENST00000481409 CHMP24386 653 aa9.21□□□□□ -0.94
USP39-215ENST00000481409 MST1P26927 711 aa9.21□□□□□ -0.94
USP39-215ENST00000481409 DNASE1L1P49184 302 aa9.21□□□□□ -0.94
USP39-215ENST00000481409 AQP4P55087 323 aa9.21□□□□□ -0.94
USP39-215ENST00000481409 PRPS1P60891 318 aa9.21□□□□□ -0.94
USP39-215ENST00000481409 NPRL3Q12980 569 aa9.21□□□□□ -0.94
USP39-215ENST00000481409 KEAP1Q14145 624 aa9.21□□□□□ -0.94
USP39-215ENST00000481409 TOMM34Q15785 309 aaPredicted RBP9.21□□□□□ -0.94
USP39-215ENST00000481409 NHSL2Q5HYW2 709 aa9.21□□□□□ -0.94
USP39-215ENST00000481409 FAM69AQ5T7M9 428 aa9.21□□□□□ -0.94
USP39-215ENST00000481409 ZER1Q7Z7L7 766 aa9.21□□□□□ -0.94
USP39-215ENST00000481409 ADGRG3Q86Y34 549 aa9.21□□□□□ -0.94
USP39-215ENST00000481409 SULF2Q8IWU5 870 aa9.21□□□□□ -0.94
USP39-215ENST00000481409 NRMQ8IXM6 262 aa9.21□□□□□ -0.94
USP39-215ENST00000481409 GALNT4Q8N4A0 578 aa9.21□□□□□ -0.94
USP39-215ENST00000481409 OR9Q2Q8NGE9 314 aa9.21□□□□□ -0.94
USP39-215ENST00000481409 ZCCHC14Q8WYQ9 949 aaKnown RBP9.21□□□□□ -0.94
USP39-215ENST00000481409 OSTF1Q92882 214 aa9.21□□□□□ -0.94
USP39-215ENST00000481409 SGTBQ96EQ0 304 aa9.21□□□□□ -0.94
USP39-215ENST00000481409 PRR14Q9BWN1 585 aa9.21□□□□□ -0.94
USP39-215ENST00000481409 PRRG3Q9BZD7 231 aa9.21□□□□□ -0.94
USP39-215ENST00000481409 FKRPQ9H9S5 495 aa9.21□□□□□ -0.94
USP39-215ENST00000481409 SMURF2Q9HAU4 748 aa9.21□□□□□ -0.94
USP39-215ENST00000481409 ACKR4Q9NPB9 350 aa9.21□□□□□ -0.94
USP39-215ENST00000481409 TUBA8Q9NY65 449 aaPredicted RBP9.21□□□□□ -0.94
USP39-215ENST00000481409 TMEFF2Q9UIK5 374 aaPredicted RBP9.21□□□□□ -0.94
USP39-215ENST00000481409 ZNF229Q9UJW7 825 aa9.21□□□□□ -0.94
USP39-215ENST00000481409 FBXL2Q9UKC9 423 aa9.21□□□□□ -0.94
USP39-215ENST00000481409 NTNG1Q9Y2I2 539 aa9.21□□□□□ -0.94
USP39-215ENST00000481409 TMED7Q9Y3B3 224 aa9.21□□□□□ -0.94
USP39-215ENST00000481409 HDGFL3Q9Y3E1 203 aa9.21□□□□□ -0.94
USP39-215ENST00000481409 ZNF337Q9Y3M9 751 aa9.21□□□□□ -0.94
USP39-215ENST00000481409 CORINQ9Y5Q5 1042 aa9.21□□□□□ -0.94
USP39-215ENST00000481409 HSPE1-MOB4S4R3N1 261 aa9.21□□□□□ -0.94
USP39-215ENST00000481409 C2orf72A6NCS6 295 aa9.2□□□□□ -0.94
USP39-215ENST00000481409 DENRO43583 198 aaKnown RBP9.2□□□□□ -0.94
USP39-215ENST00000481409 DNPH1O43598 174 aa9.2□□□□□ -0.94
USP39-215ENST00000481409 SUSD5O60279 629 aa9.2□□□□□ -0.94
USP39-215ENST00000481409 HCN1O60741 890 aa9.2□□□□□ -0.94
USP39-215ENST00000481409 AHSA1O95433 338 aa9.2□□□□□ -0.94
USP39-215ENST00000481409 SFTPCP11686 197 aa9.2□□□□□ -0.94
USP39-215ENST00000481409 IFI30P13284 250 aa9.2□□□□□ -0.94
USP39-215ENST00000481409 HK1P19367 917 aa9.2□□□□□ -0.94
USP39-215ENST00000481409 CAPGP40121 348 aa9.2□□□□□ -0.94
USP39-215ENST00000481409 MEOX1P50221 254 aa9.2□□□□□ -0.94
USP39-215ENST00000481409 RNF144AP50876 292 aaPredicted RBP9.2□□□□□ -0.94
USP39-215ENST00000481409 NUP107P57740 925 aa9.2□□□□□ -0.94
USP39-215ENST00000481409 RAC1P63000 192 aa9.2□□□□□ -0.94
USP39-215ENST00000481409 CRYZQ08257 329 aaKnown RBP9.2□□□□□ -0.94
USP39-215ENST00000481409 FOXF1Q12946 379 aa9.2□□□□□ -0.94
USP39-215ENST00000481409 PPP1R8Q12972 351 aaKnown RBP9.2□□□□□ -0.94
USP39-215ENST00000481409 SLC36A3Q495N2 470 aa9.2□□□□□ -0.94
USP39-215ENST00000481409 OR5M10Q6IEU7 315 aa9.2□□□□□ -0.94
USP39-215ENST00000481409 KLHL17Q6TDP4 642 aa9.2□□□□□ -0.94
USP39-215ENST00000481409 ARSKQ6UWY0 536 aa9.2□□□□□ -0.94
USP39-215ENST00000481409 WDR88Q6ZMY6 472 aa9.2□□□□□ -0.94
USP39-215ENST00000481409 Q6ZS92 163 aa9.2□□□□□ -0.94
USP39-215ENST00000481409 PRICKLE2Q7Z3G6 844 aa9.2□□□□□ -0.94
USP39-215ENST00000481409 GALNTL5Q7Z4T8 443 aa9.2□□□□□ -0.94
USP39-215ENST00000481409 HS3ST5Q8IZT8 346 aa9.2□□□□□ -0.94
USP39-215ENST00000481409 FAM109AQ8N4B1 249 aa9.2□□□□□ -0.94
USP39-215ENST00000481409 SETD9Q8NE22 299 aa9.2□□□□□ -0.94
USP39-215ENST00000481409 MFSD8Q8NHS3 518 aa9.2□□□□□ -0.94
USP39-215ENST00000481409 TFAP2CQ92754 450 aa9.2□□□□□ -0.94
USP39-215ENST00000481409 HRASLS5Q96KN8 279 aa9.2□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms