RNA–Protein interactions for RNA: ENST00000479544.6

USP42-206, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 1 (best)

Gene USP42, Length 4,286 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-206ENST00000479544 PUS10Q3MIT2 529 aaKnown RBP12.58□□□□□ -0.4
USP42-206ENST00000479544 AMZ1Q400G9 498 aa12.58□□□□□ -0.4
USP42-206ENST00000479544 Q5BKY6 102 aa12.58□□□□□ -0.4
USP42-206ENST00000479544 GLT8D1Q68CQ7 371 aa12.58□□□□□ -0.4
USP42-206ENST00000479544 ZNF761Q86XN6 746 aaPredicted RBP12.58□□□□□ -0.4
USP42-206ENST00000479544 OVCA2Q8WZ82 227 aa12.58□□□□□ -0.4
USP42-206ENST00000479544 RAD9AQ99638 391 aa12.58□□□□□ -0.4
USP42-206ENST00000479544 CLSTN3Q9BQT9 956 aa12.58□□□□□ -0.4
USP42-206ENST00000479544 EIF5A2Q9GZV4 153 aaKnown RBP12.58□□□□□ -0.4
USP42-206ENST00000479544 TMEM231Q9H6L2 316 aa12.58□□□□□ -0.4
USP42-206ENST00000479544 ZNF334Q9HCZ1 680 aaPredicted RBP12.58□□□□□ -0.4
USP42-206ENST00000479544 FTSJ1Q9UET6 329 aa12.58□□□□□ -0.4
USP42-206ENST00000479544 ZNF878C9JN71 531 aa12.58□□□□□ -0.4
USP42-206ENST00000479544 K7ESM1 405 aa12.58□□□□□ -0.4
USP42-206ENST00000479544 DRD2P14416 443 aa12.58□□□□□ -0.4
USP42-206ENST00000479544 FOSL2P15408 326 aa12.58□□□□□ -0.4
USP42-206ENST00000479544 MAGEB1P43366 347 aa12.58□□□□□ -0.4
USP42-206ENST00000479544 RTN4RL1Q86UN2 441 aaPredicted RBP12.58□□□□□ -0.4
USP42-206ENST00000479544 SLC35F2Q8IXU6 374 aa12.58□□□□□ -0.4
USP42-206ENST00000479544 OR5AK2Q8NH90 309 aa12.58□□□□□ -0.4
USP42-206ENST00000479544 SETD7Q8WTS6 366 aaKnown RBP12.58□□□□□ -0.4
USP42-206ENST00000479544 UCN3Q969E3 161 aa12.58□□□□□ -0.4
USP42-206ENST00000479544 NRTNQ99748 197 aa12.58□□□□□ -0.4
USP42-206ENST00000479544 ACTRT3Q9BYD9 372 aa12.58□□□□□ -0.4
USP42-206ENST00000479544 PRAMEF4O60810 478 aa12.58□□□□□ -0.4
USP42-206ENST00000479544 FBXO24O75426 580 aa12.58□□□□□ -0.4
USP42-206ENST00000479544 MTNR1BP49286 362 aa12.58□□□□□ -0.4
USP42-206ENST00000479544 BTG1P62324 171 aa12.58□□□□□ -0.4
USP42-206ENST00000479544 CXADRP78310 365 aa12.58□□□□□ -0.4
USP42-206ENST00000479544 TOMM20Q15388 145 aa12.58□□□□□ -0.4
USP42-206ENST00000479544 PRAMEF9Q5VWM5 478 aa12.58□□□□□ -0.4
USP42-206ENST00000479544 TSSK4Q6SA08 328 aa12.58□□□□□ -0.4
USP42-206ENST00000479544 LIN28BQ6ZN17 250 aaKnown RBP eCLIP12.58□□□□□ -0.4
USP42-206ENST00000479544 ANGPTL6Q8NI99 470 aa12.58□□□□□ -0.4
USP42-206ENST00000479544 ZG16BQ96DA0 208 aa12.58□□□□□ -0.4
USP42-206ENST00000479544 ABHD1Q96SE0 405 aa12.58□□□□□ -0.4
USP42-206ENST00000479544 ORAI3Q9BRQ5 295 aa12.58□□□□□ -0.4
USP42-206ENST00000479544 TMEM168Q9H0V1 697 aa12.58□□□□□ -0.4
USP42-206ENST00000479544 PRMT8Q9NR22 394 aaPredicted RBP12.58□□□□□ -0.4
USP42-206ENST00000479544 ATG4BQ9Y4P1 393 aa12.58□□□□□ -0.4
USP42-206ENST00000479544 TRBV5-3A0A0A0MS03 114 aa12.57□□□□□ -0.4
USP42-206ENST00000479544 GPR89AB7ZAQ6 455 aa12.57□□□□□ -0.4
USP42-206ENST00000479544 PRAF2O60831 178 aa12.57□□□□□ -0.4
USP42-206ENST00000479544 GPR89BP0CG08 455 aa12.57□□□□□ -0.4
USP42-206ENST00000479544 SOX9P48436 509 aa12.57□□□□□ -0.4
USP42-206ENST00000479544 VASPP50552 380 aaPredicted RBP12.57□□□□□ -0.4
USP42-206ENST00000479544 SFRP5Q5T4F7 317 aa12.57□□□□□ -0.4
USP42-206ENST00000479544 TIGD3Q6B0B8 471 aa12.57□□□□□ -0.4
USP42-206ENST00000479544 SAMD14Q8IZD0 417 aaPredicted RBP12.57□□□□□ -0.4
USP42-206ENST00000479544 DCUN1D4Q92564 292 aa12.57□□□□□ -0.4
USP42-206ENST00000479544 ELP4Q96EB1 424 aa12.57□□□□□ -0.4
USP42-206ENST00000479544 M0QYG6 137 aa12.57□□□□□ -0.4
USP42-206ENST00000479544 TMPRSS11DO60235 418 aa12.57□□□□□ -0.4
USP42-206ENST00000479544 ZNF254O75437 659 aa12.57□□□□□ -0.4
USP42-206ENST00000479544 AGR2O95994 175 aa12.57□□□□□ -0.4
USP42-206ENST00000479544 SOD1P00441 154 aa12.57□□□□□ -0.4
USP42-206ENST00000479544 CXCR1P25024 350 aa12.57□□□□□ -0.4
USP42-206ENST00000479544 MAPK3P27361 379 aaPredicted RBP12.57□□□□□ -0.4
USP42-206ENST00000479544 CTXN1P60606 82 aa12.57□□□□□ -0.4
USP42-206ENST00000479544 ELOAQ14241 798 aaKnown RBP12.57□□□□□ -0.4
USP42-206ENST00000479544 GRM7Q14831 915 aa12.57□□□□□ -0.4
USP42-206ENST00000479544 TMEM205Q6UW68 189 aa12.57□□□□□ -0.4
USP42-206ENST00000479544 PRSS42Q7Z5A4 293 aa12.57□□□□□ -0.4
USP42-206ENST00000479544 OR10R2Q8NGX6 335 aa12.57□□□□□ -0.4
USP42-206ENST00000479544 SMIM3Q9BZL3 60 aa12.57□□□□□ -0.4
USP42-206ENST00000479544 ULBP3Q9BZM4 244 aa12.57□□□□□ -0.4
USP42-206ENST00000479544 RPS10P5Q9NQ39 176 aa12.57□□□□□ -0.4
USP42-206ENST00000479544 MAN2C1Q9NTJ4 1040 aa12.57□□□□□ -0.4
USP42-206ENST00000479544 TMEM72A0PK05 275 aa12.57□□□□□ -0.4
USP42-206ENST00000479544 SOX1O00570 391 aaPredicted RBP12.57□□□□□ -0.4
USP42-206ENST00000479544 LIMS3P0CW19 117 aa12.57□□□□□ -0.4
USP42-206ENST00000479544 LIMS4P0CW20 117 aa12.57□□□□□ -0.4
USP42-206ENST00000479544 NUDT1P36639 197 aa12.57□□□□□ -0.4
USP42-206ENST00000479544 FRKP42685 505 aaPredicted RBP12.57□□□□□ -0.4
USP42-206ENST00000479544 ACTA2P62736 377 aa12.57□□□□□ -0.4
USP42-206ENST00000479544 ACTG2P63267 376 aa12.57□□□□□ -0.4
USP42-206ENST00000479544 SHC2P98077 582 aa12.57□□□□□ -0.4
USP42-206ENST00000479544 DSC1Q08554 894 aa12.57□□□□□ -0.4
USP42-206ENST00000479544 FAM111BQ6SJ93 734 aa12.57□□□□□ -0.4
USP42-206ENST00000479544 C12orf45Q8N5I9 185 aaPredicted RBP12.57□□□□□ -0.4
USP42-206ENST00000479544 OR2A12Q8NGT7 310 aa12.57□□□□□ -0.4
USP42-206ENST00000479544 C15orf40Q8WUR7 153 aa12.57□□□□□ -0.4
USP42-206ENST00000479544 HAVCR1Q96D42 359 aa12.57□□□□□ -0.4
USP42-206ENST00000479544 SLC25A44Q96H78 314 aaPredicted RBP12.57□□□□□ -0.4
USP42-206ENST00000479544 ARHGAP9Q9BRR9 750 aa12.57□□□□□ -0.4
USP42-206ENST00000479544 TRAF4Q9BUZ4 470 aaPredicted RBP12.57□□□□□ -0.4
USP42-206ENST00000479544 LIN7BQ9HAP6 207 aa12.57□□□□□ -0.4
USP42-206ENST00000479544 PNO1Q9NRX1 252 aaKnown RBP12.57□□□□□ -0.4
USP42-206ENST00000479544 TEX13DA0A0J9YY54 714 aaPredicted RBP12.57□□□□□ -0.4
USP42-206ENST00000479544 TO15178 435 aa12.57□□□□□ -0.4
USP42-206ENST00000479544 LANCL1O43813 399 aa12.57□□□□□ -0.4
USP42-206ENST00000479544 ADH5P11766 374 aa12.57□□□□□ -0.4
USP42-206ENST00000479544 AKT2P31751 481 aa12.57□□□□□ -0.4
USP42-206ENST00000479544 DCTDP32321 178 aa12.57□□□□□ -0.4
USP42-206ENST00000479544 HSD17B2P37059 387 aa12.57□□□□□ -0.4
USP42-206ENST00000479544 VIPR2P41587 438 aa12.57□□□□□ -0.4
USP42-206ENST00000479544 ST3GAL2Q16842 350 aa12.57□□□□□ -0.4
USP42-206ENST00000479544 DEFB110Q30KQ9 67 aa12.57□□□□□ -0.4
USP42-206ENST00000479544 MRPL2Q5T653 305 aaKnown RBP12.57□□□□□ -0.4
USP42-206ENST00000479544 PARS2Q7L3T8 475 aaKnown RBP12.57□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms