RNA–Protein interactions for RNA: ENST00000473373.1

CPNE1-222, Transcript of copine 1, human

TSL 2

Gene CPNE1, Length 821 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPNE1-222	ENST00000473373	HNRNPCL3	B7ZW38	293 aa		10.28	□□□□□ -0.76
CPNE1-222	ENST00000473373	EFNA2	O43921	213 aa		10.28	□□□□□ -0.76
CPNE1-222	ENST00000473373	HNRNPCL1	O60812	293 aa	Known RBP	10.28	□□□□□ -0.76
CPNE1-222	ENST00000473373	YES1	P07947	543 aa		10.28	□□□□□ -0.76
CPNE1-222	ENST00000473373	VIM	P08670	466 aa	Known RBP	10.28	□□□□□ -0.76
CPNE1-222	ENST00000473373	HNRNPCL4	P0DMR1	293 aa		10.28	□□□□□ -0.76
CPNE1-222	ENST00000473373	FKBP2	P26885	142 aa	Known RBP	10.28	□□□□□ -0.76
CPNE1-222	ENST00000473373	GTF2E2	P29084	291 aa	Known RBP	10.28	□□□□□ -0.76
CPNE1-222	ENST00000473373	TACR3	P29371	465 aa		10.28	□□□□□ -0.76
CPNE1-222	ENST00000473373	ATP4B	P51164	291 aa		10.28	□□□□□ -0.76
CPNE1-222	ENST00000473373	CAPRIN1	Q14444	709 aa	Known RBP	10.28	□□□□□ -0.76
CPNE1-222	ENST00000473373	GCNT6	Q5T4J0	391 aa		10.28	□□□□□ -0.76
CPNE1-222	ENST00000473373	BLOC1S3	Q6QNY0	202 aa		10.28	□□□□□ -0.76
CPNE1-222	ENST00000473373	ZNF836	Q6ZNA1	936 aa		10.28	□□□□□ -0.76
CPNE1-222	ENST00000473373	TMPPE	Q6ZT21	453 aa		10.28	□□□□□ -0.76
CPNE1-222	ENST00000473373	FAM71C	Q8NEG0	241 aa		10.28	□□□□□ -0.76
CPNE1-222	ENST00000473373	BBS10	Q8TAM1	723 aa		10.28	□□□□□ -0.76
CPNE1-222	ENST00000473373	SLC38A5	Q8WUX1	472 aa		10.28	□□□□□ -0.76
CPNE1-222	ENST00000473373	ZNF775	Q96BV0	537 aa	Predicted RBP	10.28	□□□□□ -0.76
CPNE1-222	ENST00000473373	SIKE1	Q9BRV8	207 aa		10.28	□□□□□ -0.76
CPNE1-222	ENST00000473373	SPATA5L1	Q9BVQ7	753 aa		10.28	□□□□□ -0.76
CPNE1-222	ENST00000473373	PAIP1	Q9H074	479 aa	Known RBP	10.28	□□□□□ -0.76
CPNE1-222	ENST00000473373	UBTD1	Q9HAC8	227 aa		10.28	□□□□□ -0.76
CPNE1-222	ENST00000473373	PLSCR4	Q9NRQ2	329 aa		10.28	□□□□□ -0.76
CPNE1-222	ENST00000473373	CCM2L	Q9NUG4	571 aa	Predicted RBP	10.28	□□□□□ -0.76
CPNE1-222	ENST00000473373	RLIM	Q9NVW2	624 aa		10.28	□□□□□ -0.76
CPNE1-222	ENST00000473373	SELENON	Q9NZV5	590 aa		10.28	□□□□□ -0.76
CPNE1-222	ENST00000473373	ST6GALNAC2	Q9UJ37	374 aa		10.28	□□□□□ -0.76
CPNE1-222	ENST00000473373	LEF1	Q9UJU2	399 aa	Predicted RBP	10.28	□□□□□ -0.76
CPNE1-222	ENST00000473373	TMED7	Q9Y3B3	224 aa		10.28	□□□□□ -0.76
CPNE1-222	ENST00000473373	HDGFL3	Q9Y3E1	203 aa		10.28	□□□□□ -0.76
CPNE1-222	ENST00000473373	HEATR1	Q9H583	2144 aa	Known RBP	10.28	□□□□□ -0.76
CPNE1-222	ENST00000473373	EDF1	O60869	148 aa	Known RBP	10.27	□□□□□ -0.77
CPNE1-222	ENST00000473373	BCAS1	O75363	584 aa	Predicted RBP	10.27	□□□□□ -0.77
CPNE1-222	ENST00000473373	SASH3	O75995	380 aa		10.27	□□□□□ -0.77
CPNE1-222	ENST00000473373	CGA	P01215	116 aa		10.27	□□□□□ -0.77
CPNE1-222	ENST00000473373	RAF1	P04049	648 aa		10.27	□□□□□ -0.77
CPNE1-222	ENST00000473373	CD1E	P15812	388 aa		10.27	□□□□□ -0.77
CPNE1-222	ENST00000473373	PPP3CB	P16298	524 aa		10.27	□□□□□ -0.77
CPNE1-222	ENST00000473373	SLC6A2	P23975	617 aa		10.27	□□□□□ -0.77
CPNE1-222	ENST00000473373	IST1	P53990	364 aa		10.27	□□□□□ -0.77
CPNE1-222	ENST00000473373	EPS8	Q12929	822 aa		10.27	□□□□□ -0.77
CPNE1-222	ENST00000473373	NFYC	Q13952	458 aa		10.27	□□□□□ -0.77
CPNE1-222	ENST00000473373	STK11	Q15831	433 aa		10.27	□□□□□ -0.77
CPNE1-222	ENST00000473373	CYP51A1	Q16850	503 aa		10.27	□□□□□ -0.77
CPNE1-222	ENST00000473373	ZSWIM7	Q19AV6	140 aa		10.27	□□□□□ -0.77
CPNE1-222	ENST00000473373	MMEL1	Q495T6	779 aa		10.27	□□□□□ -0.77
CPNE1-222	ENST00000473373	NUFIP2	Q7Z417	695 aa	Known RBP	10.27	□□□□□ -0.77
CPNE1-222	ENST00000473373	GALNT5	Q7Z7M9	940 aa		10.27	□□□□□ -0.77
CPNE1-222	ENST00000473373	NFKBID	Q8NI38	313 aa		10.27	□□□□□ -0.77
CPNE1-222	ENST00000473373	PIGX	Q8TBF5	258 aa		10.27	□□□□□ -0.77
CPNE1-222	ENST00000473373	KISS1R	Q969F8	398 aa	Predicted RBP	10.27	□□□□□ -0.77
CPNE1-222	ENST00000473373	MAL2	Q969L2	176 aa		10.27	□□□□□ -0.77
CPNE1-222	ENST00000473373	NAA11	Q9BSU3	229 aa	Predicted RBP	10.27	□□□□□ -0.77
CPNE1-222	ENST00000473373	CCDC106	Q9BWC9	280 aa		10.27	□□□□□ -0.77
CPNE1-222	ENST00000473373	TAPBPL	Q9BX59	468 aa		10.27	□□□□□ -0.77
CPNE1-222	ENST00000473373	OR11A1	Q9GZK7	315 aa		10.27	□□□□□ -0.77
CPNE1-222	ENST00000473373	ACTR6	Q9GZN1	396 aa		10.27	□□□□□ -0.77
CPNE1-222	ENST00000473373	LIME1	Q9H400	295 aa		10.27	□□□□□ -0.77
CPNE1-222	ENST00000473373	ANGPT4	Q9Y264	503 aa		10.27	□□□□□ -0.77
CPNE1-222	ENST00000473373	NOSIP	Q9Y314	301 aa	Known RBP	10.27	□□□□□ -0.77
CPNE1-222	ENST00000473373	NDUFAF1	Q9Y375	327 aa		10.27	□□□□□ -0.77
CPNE1-222	ENST00000473373	SPG11	Q96JI7	2443 aa		10.26	□□□□□ -0.77
CPNE1-222	ENST00000473373		A0A1W2PP18	115 aa		10.26	□□□□□ -0.77
CPNE1-222	ENST00000473373	SMAD9	O15198	467 aa	Known RBP	10.26	□□□□□ -0.77
CPNE1-222	ENST00000473373	NTN1	O95631	604 aa		10.26	□□□□□ -0.77
CPNE1-222	ENST00000473373	PMS2P2	O95744	297 aa		10.26	□□□□□ -0.77
CPNE1-222	ENST00000473373	THBS1	P07996	1170 aa		10.26	□□□□□ -0.77
CPNE1-222	ENST00000473373	NUDT7	P0C024	238 aa		10.26	□□□□□ -0.77
CPNE1-222	ENST00000473373	TFPT	P0C1Z6	253 aa		10.26	□□□□□ -0.77
CPNE1-222	ENST00000473373	RPS4Y1	P22090	263 aa	Known RBP	10.26	□□□□□ -0.77
CPNE1-222	ENST00000473373	SLC1A3	P43003	542 aa		10.26	□□□□□ -0.77
CPNE1-222	ENST00000473373	CLK1	P49759	484 aa	Known RBP	10.26	□□□□□ -0.77
CPNE1-222	ENST00000473373	SLC35A1	P78382	337 aa		10.26	□□□□□ -0.77
CPNE1-222	ENST00000473373	IL1RL1	Q01638	556 aa		10.26	□□□□□ -0.77
CPNE1-222	ENST00000473373	SCARB2	Q14108	478 aa		10.26	□□□□□ -0.77
CPNE1-222	ENST00000473373	GUSBP1	Q15486	140 aa		10.26	□□□□□ -0.77
CPNE1-222	ENST00000473373	PAGE3	Q5JUK9	113 aa		10.26	□□□□□ -0.77
CPNE1-222	ENST00000473373	WBP2NL	Q6ICG8	309 aa		10.26	□□□□□ -0.77
CPNE1-222	ENST00000473373	ZC3HAV1	Q7Z2W4	902 aa	Known RBP	10.26	□□□□□ -0.77
CPNE1-222	ENST00000473373	DHDDS	Q86SQ9	333 aa		10.26	□□□□□ -0.77
CPNE1-222	ENST00000473373	MTDH	Q86UE4	582 aa	Known RBP	10.26	□□□□□ -0.77
CPNE1-222	ENST00000473373	CXorf67	Q86X51	503 aa	Predicted RBP	10.26	□□□□□ -0.77
CPNE1-222	ENST00000473373	STEAP2	Q8NFT2	490 aa		10.26	□□□□□ -0.77
CPNE1-222	ENST00000473373	NINJ1	Q92982	152 aa		10.26	□□□□□ -0.77
CPNE1-222	ENST00000473373	ARL5B	Q96KC2	179 aa		10.26	□□□□□ -0.77
CPNE1-222	ENST00000473373	ZNF300	Q96RE9	604 aa	Predicted RBP	10.26	□□□□□ -0.77
CPNE1-222	ENST00000473373	ZNF607	Q96SK3	696 aa		10.26	□□□□□ -0.77
CPNE1-222	ENST00000473373	SPATA9	Q9BWV2	254 aa		10.26	□□□□□ -0.77
CPNE1-222	ENST00000473373	TMEM120A	Q9BXJ8	343 aa		10.26	□□□□□ -0.77
CPNE1-222	ENST00000473373	HDHD5	Q9BXW7	423 aa		10.26	□□□□□ -0.77
CPNE1-222	ENST00000473373	GP6	Q9HCN6	339 aa		10.26	□□□□□ -0.77
CPNE1-222	ENST00000473373	A4GALT	Q9NPC4	353 aa		10.26	□□□□□ -0.77
CPNE1-222	ENST00000473373	NGB	Q9NPG2	151 aa		10.26	□□□□□ -0.77
CPNE1-222	ENST00000473373	TMEM181	Q9P2C4	612 aa		10.26	□□□□□ -0.77
CPNE1-222	ENST00000473373	OSGIN1	Q9UJX0	560 aa		10.26	□□□□□ -0.77
CPNE1-222	ENST00000473373	GPR52	Q9Y2T5	361 aa		10.26	□□□□□ -0.77
CPNE1-222	ENST00000473373	MTOR	P42345	2549 aa		10.26	□□□□□ -0.77
CPNE1-222	ENST00000473373	CIB4	A0PJX0	185 aa		10.25	□□□□□ -0.77
CPNE1-222	ENST00000473373	TMEM72	A0PK05	275 aa		10.25	□□□□□ -0.77

Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms