RNA–Protein interactions for RNA: ENST00000461553.1

USP4-206, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 4

Gene USP4, Length 544 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-206ENST00000461553 ING1Q9UK53 422 aaPredicted RBP12.38□□□□□ -0.43
USP4-206ENST00000461553 HDGFL3Q9Y3E1 203 aa12.38□□□□□ -0.43
USP4-206ENST00000461553 HEATR1Q9H583 2144 aaKnown RBP12.37□□□□□ -0.43
USP4-206ENST00000461553 HS3ST1O14792 307 aa12.37□□□□□ -0.43
USP4-206ENST00000461553 KLF11O14901 512 aa12.37□□□□□ -0.43
USP4-206ENST00000461553 DNPH1O43598 174 aa12.37□□□□□ -0.43
USP4-206ENST00000461553 C1QCP02747 245 aa12.37□□□□□ -0.43
USP4-206ENST00000461553 DBIP07108 87 aaKnown RBP12.37□□□□□ -0.43
USP4-206ENST00000461553 IL7RP16871 459 aa12.37□□□□□ -0.43
USP4-206ENST00000461553 RPS4Y1P22090 263 aaKnown RBP12.37□□□□□ -0.43
USP4-206ENST00000461553 FKBP2P26885 142 aaKnown RBP12.37□□□□□ -0.43
USP4-206ENST00000461553 MAGEA8P43361 318 aa12.37□□□□□ -0.43
USP4-206ENST00000461553 IDH2P48735 452 aaKnown RBP12.37□□□□□ -0.43
USP4-206ENST00000461553 PLAURQ03405 335 aa12.37□□□□□ -0.43
USP4-206ENST00000461553 TAB1Q15750 504 aa12.37□□□□□ -0.43
USP4-206ENST00000461553 STK11Q15831 433 aa12.37□□□□□ -0.43
USP4-206ENST00000461553 LIN52Q52LA3 116 aa12.37□□□□□ -0.43
USP4-206ENST00000461553 COX20Q5RI15 118 aa12.37□□□□□ -0.43
USP4-206ENST00000461553 BEND6Q5SZJ8 279 aaPredicted RBP12.37□□□□□ -0.43
USP4-206ENST00000461553 MRPL2Q5T653 305 aaKnown RBP12.37□□□□□ -0.43
USP4-206ENST00000461553 AP1ARQ63HQ0 302 aa12.37□□□□□ -0.43
USP4-206ENST00000461553 YTHDF3Q7Z739 585 aaKnown RBP12.37□□□□□ -0.43
USP4-206ENST00000461553 PEX5LQ8IYB4 626 aa12.37□□□□□ -0.43
USP4-206ENST00000461553 ZNF100Q8IYN0 542 aa12.37□□□□□ -0.43
USP4-206ENST00000461553 HSD17B8Q92506 261 aa12.37□□□□□ -0.43
USP4-206ENST00000461553 CNOT9Q92600 299 aaKnown RBP12.37□□□□□ -0.43
USP4-206ENST00000461553 ZG16BQ96DA0 208 aa12.37□□□□□ -0.43
USP4-206ENST00000461553 TMEM204Q9BSN7 226 aa12.37□□□□□ -0.43
USP4-206ENST00000461553 GSX1Q9H4S2 264 aaPredicted RBP12.37□□□□□ -0.43
USP4-206ENST00000461553 ESRP2Q9H6T0 727 aaKnown RBP12.37□□□□□ -0.43
USP4-206ENST00000461553 CACYBPQ9HB71 228 aaKnown RBP12.37□□□□□ -0.43
USP4-206ENST00000461553 CALML5Q9NZT1 146 aa12.37□□□□□ -0.43
USP4-206ENST00000461553 PRSS50Q9UI38 385 aa12.37□□□□□ -0.43
USP4-206ENST00000461553 RNF115Q9Y4L5 304 aa12.37□□□□□ -0.43
USP4-206ENST00000461553 TMED7-TICAM2A0A0A6YYA0 188 aa12.36□□□□□ -0.43
USP4-206ENST00000461553 TMEM247A6NEH6 219 aa12.36□□□□□ -0.43
USP4-206ENST00000461553 ZNF814B7Z6K7 855 aa12.36□□□□□ -0.43
USP4-206ENST00000461553 AP3D1O14617 1153 aa12.36□□□□□ -0.43
USP4-206ENST00000461553 UBDO15205 165 aa12.36□□□□□ -0.43
USP4-206ENST00000461553 CLOCKO15516 846 aa12.36□□□□□ -0.43
USP4-206ENST00000461553 TMCC2O75069 709 aa12.36□□□□□ -0.43
USP4-206ENST00000461553 LYZL6O75951 148 aa12.36□□□□□ -0.43
USP4-206ENST00000461553 CNOT4O95628 575 aaKnown RBP12.36□□□□□ -0.43
USP4-206ENST00000461553 PLAUP00749 431 aa12.36□□□□□ -0.43
USP4-206ENST00000461553 BCHEP06276 602 aa12.36□□□□□ -0.43
USP4-206ENST00000461553 CD3EP07766 207 aa12.36□□□□□ -0.43
USP4-206ENST00000461553 INHBBP09529 407 aa12.36□□□□□ -0.43
USP4-206ENST00000461553 CRATP43155 626 aa12.36□□□□□ -0.43
USP4-206ENST00000461553 PTH2RP49190 550 aa12.36□□□□□ -0.43
USP4-206ENST00000461553 CLK1P49759 484 aaKnown RBP12.36□□□□□ -0.43
USP4-206ENST00000461553 POLR2HP52434 150 aaKnown RBP12.36□□□□□ -0.43
USP4-206ENST00000461553 CRISP3P54108 245 aa12.36□□□□□ -0.43
USP4-206ENST00000461553 DSTNP60981 165 aa12.36□□□□□ -0.43
USP4-206ENST00000461553 STX1BP61266 288 aa12.36□□□□□ -0.43
USP4-206ENST00000461553 C6orf10Q5SRN2 563 aa12.36□□□□□ -0.43
USP4-206ENST00000461553 PRSS57Q6UWY2 283 aa12.36□□□□□ -0.43
USP4-206ENST00000461553 ZC3HAV1Q7Z2W4 902 aaKnown RBP12.36□□□□□ -0.43
USP4-206ENST00000461553 MAVSQ7Z434 540 aa12.36□□□□□ -0.43
USP4-206ENST00000461553 MTDHQ86UE4 582 aaKnown RBP12.36□□□□□ -0.43
USP4-206ENST00000461553 ZNF440Q8IYI8 595 aa12.36□□□□□ -0.43
USP4-206ENST00000461553 MIER2Q8N344 545 aa12.36□□□□□ -0.43
USP4-206ENST00000461553 AKAP1Q92667 903 aaKnown RBP eCLIP12.36□□□□□ -0.43
USP4-206ENST00000461553 PMM1Q92871 262 aa12.36□□□□□ -0.43
USP4-206ENST00000461553 APH1AQ96BI3 265 aa12.36□□□□□ -0.43
USP4-206ENST00000461553 DDIT4LQ96D03 193 aa12.36□□□□□ -0.43
USP4-206ENST00000461553 DNAJA3Q96EY1 480 aa12.36□□□□□ -0.43
USP4-206ENST00000461553 ITCHQ96J02 903 aa12.36□□□□□ -0.43
USP4-206ENST00000461553 ARL5BQ96KC2 179 aa12.36□□□□□ -0.43
USP4-206ENST00000461553 Q96MF0 132 aa12.36□□□□□ -0.43
USP4-206ENST00000461553 GSX2Q9BZM3 304 aa12.36□□□□□ -0.43
USP4-206ENST00000461553 OR11A1Q9GZK7 315 aa12.36□□□□□ -0.43
USP4-206ENST00000461553 SDR39U1Q9NRG7 319 aaPredicted RBP12.36□□□□□ -0.43
USP4-206ENST00000461553 NOSIPQ9Y314 301 aaKnown RBP12.36□□□□□ -0.43
USP4-206ENST00000461553 TMED7Q9Y3B3 224 aa12.36□□□□□ -0.43
USP4-206ENST00000461553 IGKV3D-15A0A087WSY6 115 aa12.35□□□□□ -0.43
USP4-206ENST00000461553 CFAP73A6NFT4 308 aa12.35□□□□□ -0.43
USP4-206ENST00000461553 FAM171A2A8MVW0 826 aa12.35□□□□□ -0.43
USP4-206ENST00000461553 FAAHO00519 579 aa12.35□□□□□ -0.43
USP4-206ENST00000461553 GPR171O14626 319 aa12.35□□□□□ -0.43
USP4-206ENST00000461553 ADAM11O75078 769 aa12.35□□□□□ -0.43
USP4-206ENST00000461553 CCNA2P20248 432 aa12.35□□□□□ -0.43
USP4-206ENST00000461553 COX5AP20674 150 aa12.35□□□□□ -0.43
USP4-206ENST00000461553 POLR2JP52435 117 aaKnown RBP12.35□□□□□ -0.43
USP4-206ENST00000461553 OR2B6P58173 313 aa12.35□□□□□ -0.43
USP4-206ENST00000461553 EPS8Q12929 822 aa12.35□□□□□ -0.43
USP4-206ENST00000461553 PDK3Q15120 406 aa12.35□□□□□ -0.43
USP4-206ENST00000461553 PPA1Q15181 289 aa12.35□□□□□ -0.43
USP4-206ENST00000461553 NCMAPQ5T1S8 102 aa12.35□□□□□ -0.43
USP4-206ENST00000461553 AGBL2Q5U5Z8 902 aa12.35□□□□□ -0.43
USP4-206ENST00000461553 SSX8Q7RTT4 187 aa12.35□□□□□ -0.43
USP4-206ENST00000461553 UBE2J2Q8N2K1 259 aa12.35□□□□□ -0.43
USP4-206ENST00000461553 ZNF611Q8N823 705 aa12.35□□□□□ -0.43
USP4-206ENST00000461553 OR9I1Q8NGQ6 314 aa12.35□□□□□ -0.43
USP4-206ENST00000461553 FBXW5Q969U6 566 aa12.35□□□□□ -0.43
USP4-206ENST00000461553 ZNF775Q96BV0 537 aaPredicted RBP12.35□□□□□ -0.43
USP4-206ENST00000461553 POM121Q96HA1 1249 aa12.35□□□□□ -0.43
USP4-206ENST00000461553 OR52B2Q96RD2 323 aa12.35□□□□□ -0.43
USP4-206ENST00000461553 MTHFD2LQ9H903 347 aaPredicted RBP12.35□□□□□ -0.43
USP4-206ENST00000461553 TPT1P8Q9HAU6 139 aa12.35□□□□□ -0.43
USP4-206ENST00000461553 THUMPD1Q9NXG2 353 aaKnown RBP12.35□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms