RNA–Protein interactions for RNA: ENST00000460162.1

PTPN4-207, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 623 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-207ENST00000460162 SLC38A1Q9H2H9 487 aa20.15■□□□□ 0.82
PTPN4-207ENST00000460162 CCDC154A6NI56 674 aa20.14■□□□□ 0.81
PTPN4-207ENST00000460162 TRPC5OSA6NMA1 111 aa20.14■□□□□ 0.81
PTPN4-207ENST00000460162 ZNF716A6NP11 495 aa20.14■□□□□ 0.81
PTPN4-207ENST00000460162 HDAC3O15379 428 aa20.14■□□□□ 0.81
PTPN4-207ENST00000460162 ZNF500O60304 480 aaPredicted RBP20.14■□□□□ 0.81
PTPN4-207ENST00000460162 IGHV1-2P23083 117 aa20.14■□□□□ 0.81
PTPN4-207ENST00000460162 EDNRAP25101 427 aa20.14■□□□□ 0.81
PTPN4-207ENST00000460162 HTR3AP46098 478 aa20.14■□□□□ 0.81
PTPN4-207ENST00000460162 NME5P56597 212 aa20.14■□□□□ 0.81
PTPN4-207ENST00000460162 BSPH1Q075Z2 132 aa20.14■□□□□ 0.81
PTPN4-207ENST00000460162 PPA1Q15181 289 aa20.14■□□□□ 0.81
PTPN4-207ENST00000460162 STK11Q15831 433 aa20.14■□□□□ 0.81
PTPN4-207ENST00000460162 ZNF672Q499Z4 452 aaPredicted RBP20.14■□□□□ 0.81
PTPN4-207ENST00000460162 TIMM23BQ5SRD1 257 aa20.14■□□□□ 0.81
PTPN4-207ENST00000460162 P2RY8Q86VZ1 359 aa20.14■□□□□ 0.81
PTPN4-207ENST00000460162 ANKRD42Q8N9B4 389 aa20.14■□□□□ 0.81
PTPN4-207ENST00000460162 GLB1L3Q8NCI6 653 aaPredicted RBP20.14■□□□□ 0.81
PTPN4-207ENST00000460162 ARL5BQ96KC2 179 aa20.14■□□□□ 0.81
PTPN4-207ENST00000460162 ZBTB18Q99592 522 aa20.14■□□□□ 0.81
PTPN4-207ENST00000460162 AGAP5A6NIR3 686 aa20.13■□□□□ 0.81
PTPN4-207ENST00000460162 CLDN24A6NM45 220 aa20.13■□□□□ 0.81
PTPN4-207ENST00000460162 C9JVG2 144 aa20.13■□□□□ 0.81
PTPN4-207ENST00000460162 DANCRP0C864 163 aa20.13■□□□□ 0.81
PTPN4-207ENST00000460162 GGT1P19440 569 aa20.13■□□□□ 0.81
PTPN4-207ENST00000460162 IL12AP29459 219 aa20.13■□□□□ 0.81
PTPN4-207ENST00000460162 SLC16A1P53985 500 aa20.13■□□□□ 0.81
PTPN4-207ENST00000460162 GNA13Q14344 377 aa20.13■□□□□ 0.81
PTPN4-207ENST00000460162 ETFDHQ16134 617 aa20.13■□□□□ 0.81
PTPN4-207ENST00000460162 DNAJC14Q6Y2X3 702 aaPredicted RBP20.13■□□□□ 0.81
PTPN4-207ENST00000460162 LRRC74BQ6ZQY2 392 aa20.13■□□□□ 0.81
PTPN4-207ENST00000460162 ZC3HAV1Q7Z2W4 902 aaKnown RBP20.13■□□□□ 0.81
PTPN4-207ENST00000460162 HMGN2P46Q86SG4 172 aa20.13■□□□□ 0.81
PTPN4-207ENST00000460162 ATG4DQ86TL0 474 aaPredicted RBP20.13■□□□□ 0.81
PTPN4-207ENST00000460162 ANKFN1Q8N957 763 aa20.13■□□□□ 0.81
PTPN4-207ENST00000460162 KBTBD8Q8NFY9 601 aa20.13■□□□□ 0.81
PTPN4-207ENST00000460162 WDR60Q8WVS4 1066 aa20.13■□□□□ 0.81
PTPN4-207ENST00000460162 APH1AQ96BI3 265 aa20.13■□□□□ 0.81
PTPN4-207ENST00000460162 ZNF775Q96BV0 537 aaPredicted RBP20.13■□□□□ 0.81
PTPN4-207ENST00000460162 MUCL1Q96DR8 90 aa20.13■□□□□ 0.81
PTPN4-207ENST00000460162 OR52E6Q96RD3 313 aa20.13■□□□□ 0.81
PTPN4-207ENST00000460162 THAP1Q9NVV9 213 aa20.13■□□□□ 0.81
PTPN4-207ENST00000460162 NOSIPQ9Y314 301 aaKnown RBP20.13■□□□□ 0.81
PTPN4-207ENST00000460162 GPR45Q9Y5Y3 372 aa20.13■□□□□ 0.81
PTPN4-207ENST00000460162 HIVEP2P31629 2446 aa20.13■□□□□ 0.81
PTPN4-207ENST00000460162 CADP27708 2225 aa20.12■□□□□ 0.81
PTPN4-207ENST00000460162 TMEM120BA0PK00 339 aa20.12■□□□□ 0.81
PTPN4-207ENST00000460162 OVOL3O00110 214 aa20.12■□□□□ 0.81
PTPN4-207ENST00000460162 FAAHO00519 579 aa20.12■□□□□ 0.81
PTPN4-207ENST00000460162 GPR171O14626 319 aa20.12■□□□□ 0.81
PTPN4-207ENST00000460162 ADAM11O75078 769 aa20.12■□□□□ 0.81
PTPN4-207ENST00000460162 SNNO75324 88 aaPredicted RBP20.12■□□□□ 0.81
PTPN4-207ENST00000460162 PGM3O95394 542 aa20.12■□□□□ 0.81
PTPN4-207ENST00000460162 C1QCP02747 245 aa20.12■□□□□ 0.81
PTPN4-207ENST00000460162 CHRM4P08173 479 aa20.12■□□□□ 0.81
PTPN4-207ENST00000460162 RPS4Y1P22090 263 aaKnown RBP20.12■□□□□ 0.81
PTPN4-207ENST00000460162 EPHA3P29320 983 aa20.12■□□□□ 0.81
PTPN4-207ENST00000460162 CDKN2CP42773 168 aa20.12■□□□□ 0.81
PTPN4-207ENST00000460162 MAGEA8P43361 318 aa20.12■□□□□ 0.81
PTPN4-207ENST00000460162 IDH2P48735 452 aaKnown RBP20.12■□□□□ 0.81
PTPN4-207ENST00000460162 WDR4P57081 412 aaKnown RBP20.12■□□□□ 0.81
PTPN4-207ENST00000460162 SYPL1Q16563 259 aa20.12■□□□□ 0.81
PTPN4-207ENST00000460162 FBXW9Q5XUX1 488 aa20.12■□□□□ 0.81
PTPN4-207ENST00000460162 ADGRG3Q86Y34 549 aa20.12■□□□□ 0.81
PTPN4-207ENST00000460162 SMAP2Q8WU79 429 aaPredicted RBP20.12■□□□□ 0.81
PTPN4-207ENST00000460162 CNOT9Q92600 299 aaKnown RBP20.12■□□□□ 0.81
PTPN4-207ENST00000460162 PMM1Q92871 262 aa20.12■□□□□ 0.81
PTPN4-207ENST00000460162 TRMT61AQ96FX7 289 aaKnown RBP20.12■□□□□ 0.81
PTPN4-207ENST00000460162 INPP5KQ9BT40 448 aa20.12■□□□□ 0.81
PTPN4-207ENST00000460162 TRIM2Q9C040 744 aa20.12■□□□□ 0.81
PTPN4-207ENST00000460162 OR11A1Q9GZK7 315 aa20.12■□□□□ 0.81
PTPN4-207ENST00000460162 MALT1Q9UDY8 824 aa20.12■□□□□ 0.81
PTPN4-207ENST00000460162 A0A1W2PP18 115 aa20.11■□□□□ 0.81
PTPN4-207ENST00000460162 DPRXA6NFQ7 191 aa20.11■□□□□ 0.81
PTPN4-207ENST00000460162 OR5H1A6NKK0 313 aa20.11■□□□□ 0.81
PTPN4-207ENST00000460162 SLCO1B7G3V0H7 640 aa20.11■□□□□ 0.81
PTPN4-207ENST00000460162 AP3D1O14617 1153 aa20.11■□□□□ 0.81
PTPN4-207ENST00000460162 SOD3P08294 240 aa20.11■□□□□ 0.81
PTPN4-207ENST00000460162 IDO1P14902 403 aa20.11■□□□□ 0.81
PTPN4-207ENST00000460162 UQCRBP14927 111 aa20.11■□□□□ 0.81
PTPN4-207ENST00000460162 MAP2K6P52564 334 aa20.11■□□□□ 0.81
PTPN4-207ENST00000460162 ZNF621Q6ZSS3 439 aa20.11■□□□□ 0.81
PTPN4-207ENST00000460162 ZNF433Q8N7K0 673 aaPredicted RBP20.11■□□□□ 0.81
PTPN4-207ENST00000460162 NEUROG1Q92886 237 aa20.11■□□□□ 0.81
PTPN4-207ENST00000460162 DDIT4LQ96D03 193 aa20.11■□□□□ 0.81
PTPN4-207ENST00000460162 WDR55Q9H6Y2 383 aaPredicted RBP20.11■□□□□ 0.81
PTPN4-207ENST00000460162 TMEM181Q9P2C4 612 aa20.11■□□□□ 0.81
PTPN4-207ENST00000460162 TRAPPC4Q9Y296 219 aa20.11■□□□□ 0.81
PTPN4-207ENST00000460162 MAGED1Q9Y5V3 778 aaPredicted RBP20.11■□□□□ 0.81
PTPN4-207ENST00000460162 CSPG4Q6UVK1 2322 aa20.1■□□□□ 0.81
PTPN4-207ENST00000460162 TMED7-TICAM2A0A0A6YYA0 188 aa20.1■□□□□ 0.81
PTPN4-207ENST00000460162 GOLGA8QA0A0J9YX86 632 aa20.1■□□□□ 0.81
PTPN4-207ENST00000460162 GOLGA8OA6NCC3 632 aa20.1■□□□□ 0.81
PTPN4-207ENST00000460162 GOLGA8NF8WBI6 632 aa20.1■□□□□ 0.81
PTPN4-207ENST00000460162 ZNF208O43345 1280 aa20.1■□□□□ 0.81
PTPN4-207ENST00000460162 KRT75O95678 551 aa20.1■□□□□ 0.81
PTPN4-207ENST00000460162 DBIP07108 87 aaKnown RBP20.1■□□□□ 0.81
PTPN4-207ENST00000460162 POLR2HP52434 150 aaKnown RBP20.1■□□□□ 0.81
PTPN4-207ENST00000460162 SLC18A1P54219 525 aa20.1■□□□□ 0.81
PTPN4-207ENST00000460162 PDCD4Q53EL6 469 aaKnown RBP20.1■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms