RNA–Protein interactions for RNA: ENST00000455727.6

LDLR-202, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,333 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-202ENST00000455727 IGF2P01344 180 aa13.84□□□□□ -0.19
LDLR-202ENST00000455727 IFNA16P05015 189 aa13.84□□□□□ -0.19
LDLR-202ENST00000455727 CLUP10909 449 aa13.84□□□□□ -0.19
LDLR-202ENST00000455727 CD1CP29017 333 aa13.84□□□□□ -0.19
LDLR-202ENST00000455727 RPS5P46782 204 aaKnown RBP13.84□□□□□ -0.19
LDLR-202ENST00000455727 GRM7Q14831 915 aa13.84□□□□□ -0.19
LDLR-202ENST00000455727 ISXQ2M1V0 245 aa13.84□□□□□ -0.19
LDLR-202ENST00000455727 DPY19L2P2Q6ZN68 376 aa13.84□□□□□ -0.19
LDLR-202ENST00000455727 TPRA1Q86W33 373 aa13.84□□□□□ -0.19
LDLR-202ENST00000455727 CYB561A3Q8NBI2 242 aa13.84□□□□□ -0.19
LDLR-202ENST00000455727 FAM71CQ8NEG0 241 aa13.84□□□□□ -0.19
LDLR-202ENST00000455727 KCTD12Q96CX2 325 aaKnown RBP13.84□□□□□ -0.19
LDLR-202ENST00000455727 ART5Q96L15 291 aa13.84□□□□□ -0.19
LDLR-202ENST00000455727 TMEM184BQ9Y519 407 aaPredicted RBP13.84□□□□□ -0.19
LDLR-202ENST00000455727 PCDHGB7Q9Y5F8 929 aa13.84□□□□□ -0.19
LDLR-202ENST00000455727 PCDH15Q96QU1 1955 aa13.84□□□□□ -0.19
LDLR-202ENST00000455727 SYNDIG1LA6NDD5 238 aa13.83□□□□□ -0.2
LDLR-202ENST00000455727 NCR1O76036 304 aa13.83□□□□□ -0.2
LDLR-202ENST00000455727 EPHA4P54764 986 aa13.83□□□□□ -0.2
LDLR-202ENST00000455727 GGTLC2Q14390 218 aa13.83□□□□□ -0.2
LDLR-202ENST00000455727 POMGNT2Q8NAT1 580 aa13.83□□□□□ -0.2
LDLR-202ENST00000455727 ZSCAN1Q8NBB4 408 aa13.83□□□□□ -0.2
LDLR-202ENST00000455727 OR52E2Q8NGJ4 325 aa13.83□□□□□ -0.2
LDLR-202ENST00000455727 ZDHHC12Q96GR4 267 aa13.83□□□□□ -0.2
LDLR-202ENST00000455727 SENP5Q96HI0 755 aaPredicted RBP13.83□□□□□ -0.2
LDLR-202ENST00000455727 C4orf36Q96KX1 117 aa13.83□□□□□ -0.2
LDLR-202ENST00000455727 TGM7Q96PF1 710 aa13.83□□□□□ -0.2
LDLR-202ENST00000455727 DEPDC7Q96QD5 511 aa13.83□□□□□ -0.2
LDLR-202ENST00000455727 UBL7Q96S82 380 aaPredicted RBP13.83□□□□□ -0.2
LDLR-202ENST00000455727 PHOX2BQ99453 314 aa13.83□□□□□ -0.2
LDLR-202ENST00000455727 SOHLH2Q9NX45 425 aa13.83□□□□□ -0.2
LDLR-202ENST00000455727 FBXL4Q9UKA2 621 aa13.83□□□□□ -0.2
LDLR-202ENST00000455727 OR2W5A6NFC9 320 aa13.82□□□□□ -0.2
LDLR-202ENST00000455727 E9PI62 339 aa13.82□□□□□ -0.2
LDLR-202ENST00000455727 LMO7DNF2Z398 122 aa13.82□□□□□ -0.2
LDLR-202ENST00000455727 ARPC3O15145 178 aa13.82□□□□□ -0.2
LDLR-202ENST00000455727 SC5DO75845 299 aa13.82□□□□□ -0.2
LDLR-202ENST00000455727 MRPL3P09001 348 aaKnown RBP13.82□□□□□ -0.2
LDLR-202ENST00000455727 OR2T7P0C7T2 308 aa13.82□□□□□ -0.2
LDLR-202ENST00000455727 GFERP55789 205 aa13.82□□□□□ -0.2
LDLR-202ENST00000455727 CSTF1Q05048 431 aaKnown RBP13.82□□□□□ -0.2
LDLR-202ENST00000455727 TAB1Q15750 504 aa13.82□□□□□ -0.2
LDLR-202ENST00000455727 KCNJ8Q15842 424 aa13.82□□□□□ -0.2
LDLR-202ENST00000455727 HBMQ6B0K9 141 aa13.82□□□□□ -0.2
LDLR-202ENST00000455727 DMKNQ6E0U4 476 aaPredicted RBP13.82□□□□□ -0.2
LDLR-202ENST00000455727 FAAH2Q6GMR7 532 aa13.82□□□□□ -0.2
LDLR-202ENST00000455727 ARL9Q6T311 187 aa13.82□□□□□ -0.2
LDLR-202ENST00000455727 SLITRK4Q8IW52 837 aa13.82□□□□□ -0.2
LDLR-202ENST00000455727 RDH10Q8IZV5 341 aa13.82□□□□□ -0.2
LDLR-202ENST00000455727 TEX19Q8NA77 164 aa13.82□□□□□ -0.2
LDLR-202ENST00000455727 OR2T27Q8NH04 317 aa13.82□□□□□ -0.2
LDLR-202ENST00000455727 ABHD4Q8TB40 342 aa13.82□□□□□ -0.2
LDLR-202ENST00000455727 SPRTNQ9H040 489 aaPredicted RBP13.82□□□□□ -0.2
LDLR-202ENST00000455727 C11orf54Q9H0W9 315 aaPredicted RBP13.82□□□□□ -0.2
LDLR-202ENST00000455727 ZNF337Q9Y3M9 751 aa13.82□□□□□ -0.2
LDLR-202ENST00000455727 EYSQ5T1H1 3165 aa13.82□□□□□ -0.2
LDLR-202ENST00000455727 PLA2G10O15496 165 aa13.82□□□□□ -0.2
LDLR-202ENST00000455727 IDH3BO43837 385 aa13.82□□□□□ -0.2
LDLR-202ENST00000455727 CCNKO75909 580 aa13.82□□□□□ -0.2
LDLR-202ENST00000455727 HIST1H1CP16403 213 aaKnown RBP13.82□□□□□ -0.2
LDLR-202ENST00000455727 APEX1P27695 318 aaKnown RBP13.82□□□□□ -0.2
LDLR-202ENST00000455727 HNRNPKP61978 463 aaKnown RBP eCLIP13.82□□□□□ -0.24e-6■■■■□ 21.9
LDLR-202ENST00000455727 NNATQ16517 81 aa13.82□□□□□ -0.2
LDLR-202ENST00000455727 LCN1P1Q5VSP4 162 aa13.82□□□□□ -0.2
LDLR-202ENST00000455727 FNDC7Q5VTL7 733 aa13.82□□□□□ -0.2
LDLR-202ENST00000455727 PXKQ7Z7A4 578 aa13.82□□□□□ -0.2
LDLR-202ENST00000455727 SYS1Q8N2H4 156 aa13.82□□□□□ -0.2
LDLR-202ENST00000455727 Q8N402 240 aa13.82□□□□□ -0.2
LDLR-202ENST00000455727 MS4A15Q8N5U1 240 aa13.82□□□□□ -0.2
LDLR-202ENST00000455727 C3orf49Q96BT1 292 aa13.82□□□□□ -0.2
LDLR-202ENST00000455727 TMEM165Q9HC07 324 aa13.82□□□□□ -0.2
LDLR-202ENST00000455727 UBQLN4Q9NRR5 601 aa13.82□□□□□ -0.2
LDLR-202ENST00000455727 LANCL2Q9NS86 450 aa13.82□□□□□ -0.2
LDLR-202ENST00000455727 ITGB1BP2Q9UKP3 347 aa13.82□□□□□ -0.2
LDLR-202ENST00000455727 MMACHCQ9Y4U1 282 aa13.82□□□□□ -0.2
LDLR-202ENST00000455727 IER3IP1Q9Y5U9 82 aa13.82□□□□□ -0.2
LDLR-202ENST00000455727 C17orf105B2RV13 164 aa13.81□□□□□ -0.2
LDLR-202ENST00000455727 J3QLW9 94 aa13.81□□□□□ -0.2
LDLR-202ENST00000455727 DVL2O14641 736 aa13.81□□□□□ -0.2
LDLR-202ENST00000455727 OR7A10O76100 309 aa13.81□□□□□ -0.2
LDLR-202ENST00000455727 TRAPPC2P0DI81 140 aa13.81□□□□□ -0.2
LDLR-202ENST00000455727 TRAPPC2BP0DI82 140 aa13.81□□□□□ -0.2
LDLR-202ENST00000455727 SLC2A2P11168 524 aaPredicted RBP13.81□□□□□ -0.2
LDLR-202ENST00000455727 ZNF19P17023 458 aa13.81□□□□□ -0.2
LDLR-202ENST00000455727 PPICP45877 212 aa13.81□□□□□ -0.2
LDLR-202ENST00000455727 NRG3P56975 720 aa13.81□□□□□ -0.2
LDLR-202ENST00000455727 OR12D2P58182 307 aa13.81□□□□□ -0.2
LDLR-202ENST00000455727 RPS4XP62701 263 aaKnown RBP13.81□□□□□ -0.2
LDLR-202ENST00000455727 LGALS3BPQ08380 585 aa13.81□□□□□ -0.2
LDLR-202ENST00000455727 NDUFAF6Q330K2 333 aa13.81□□□□□ -0.2
LDLR-202ENST00000455727 PRR23CQ6ZRP0 262 aa13.81□□□□□ -0.2
LDLR-202ENST00000455727 NR2C2APQ86WQ0 139 aa13.81□□□□□ -0.2
LDLR-202ENST00000455727 DEFB119Q8N690 84 aa13.81□□□□□ -0.2
LDLR-202ENST00000455727 ZNF527Q8NB42 609 aa13.81□□□□□ -0.2
LDLR-202ENST00000455727 FAM98AQ8NCA5 519 aaKnown RBP13.81□□□□□ -0.2
LDLR-202ENST00000455727 PGLYRP3Q96LB9 341 aa13.81□□□□□ -0.2
LDLR-202ENST00000455727 MOV10Q9HCE1 1003 aaKnown RBP13.81□□□□□ -0.2
LDLR-202ENST00000455727 EXOSC3Q9NQT5 275 aaKnown RBP13.81□□□□□ -0.2
LDLR-202ENST00000455727 MCIDASD6RGH6 385 aa13.81□□□□□ -0.2
LDLR-202ENST00000455727 GYPBP06028 91 aa13.81□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms