RNA–Protein interactions for RNA: ENST00000455596.5

HMGB3-205, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene HMGB3, Length 793 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-205ENST00000455596 MTDHQ86UE4 582 aaKnown RBP18.86■□□□□ 0.61
HMGB3-205ENST00000455596 VRK2Q86Y07 508 aa18.86■□□□□ 0.61
HMGB3-205ENST00000455596 GABRG1Q8N1C3 465 aa18.86■□□□□ 0.61
HMGB3-205ENST00000455596 STEAP2Q8NFT2 490 aa18.86■□□□□ 0.61
HMGB3-205ENST00000455596 ARL5BQ96KC2 179 aa18.86■□□□□ 0.61
HMGB3-205ENST00000455596 ZNF300Q96RE9 604 aaPredicted RBP18.86■□□□□ 0.61
HMGB3-205ENST00000455596 CACYBPQ9HB71 228 aaKnown RBP18.86■□□□□ 0.61
HMGB3-205ENST00000455596 CCDC167Q9P0B6 97 aa18.86■□□□□ 0.61
HMGB3-205ENST00000455596 DSCAMO60469 2012 aa18.86■□□□□ 0.61
HMGB3-205ENST00000455596 TMED7-TICAM2A0A0A6YYA0 188 aa18.85■□□□□ 0.61
HMGB3-205ENST00000455596 ZNF724A8MTY0 619 aa18.85■□□□□ 0.61
HMGB3-205ENST00000455596 CD53P19397 219 aa18.85■□□□□ 0.61
HMGB3-205ENST00000455596 CCNA2P20248 432 aa18.85■□□□□ 0.61
HMGB3-205ENST00000455596 IRX1P78414 480 aaPredicted RBP18.85■□□□□ 0.61
HMGB3-205ENST00000455596 FADDQ13158 208 aa18.85■□□□□ 0.61
HMGB3-205ENST00000455596 RGNQ15493 299 aa18.85■□□□□ 0.61
HMGB3-205ENST00000455596 BEX5Q5H9J7 111 aa18.85■□□□□ 0.61
HMGB3-205ENST00000455596 SFRP5Q5T4F7 317 aa18.85■□□□□ 0.61
HMGB3-205ENST00000455596 BLOC1S3Q6QNY0 202 aa18.85■□□□□ 0.61
HMGB3-205ENST00000455596 ZNF836Q6ZNA1 936 aa18.85■□□□□ 0.61
HMGB3-205ENST00000455596 FUNDC1Q8IVP5 155 aa18.85■□□□□ 0.61
HMGB3-205ENST00000455596 CKAP2Q8WWK9 683 aa18.85■□□□□ 0.61
HMGB3-205ENST00000455596 DDIT4LQ96D03 193 aa18.85■□□□□ 0.61
HMGB3-205ENST00000455596 SPDL1Q96EA4 605 aa18.85■□□□□ 0.61
HMGB3-205ENST00000455596 TMEM19Q96HH6 336 aa18.85■□□□□ 0.61
HMGB3-205ENST00000455596 MAGEB18Q96M61 343 aa18.85■□□□□ 0.61
HMGB3-205ENST00000455596 HS3ST6Q96QI5 342 aa18.85■□□□□ 0.61
HMGB3-205ENST00000455596 OR11A1Q9GZK7 315 aa18.85■□□□□ 0.61
HMGB3-205ENST00000455596 OSGIN1Q9UJX0 560 aa18.85■□□□□ 0.61
HMGB3-205ENST00000455596 TMED7Q9Y3B3 224 aa18.85■□□□□ 0.61
HMGB3-205ENST00000455596 AKAP9Q99996 3911 aa18.85■□□□□ 0.61
HMGB3-205ENST00000455596 A0A096LPI6 279 aa18.84■□□□□ 0.61
HMGB3-205ENST00000455596 A0A0G2JPF8 293 aa18.84■□□□□ 0.61
HMGB3-205ENST00000455596 CDHR4A6H8M9 788 aa18.84■□□□□ 0.61
HMGB3-205ENST00000455596 HNRNPCL2B2RXH8 293 aa18.84■□□□□ 0.61
HMGB3-205ENST00000455596 HNRNPCL3B7ZW38 293 aa18.84■□□□□ 0.61
HMGB3-205ENST00000455596 NR5A2O00482 541 aa18.84■□□□□ 0.61
HMGB3-205ENST00000455596 DNPH1O43598 174 aa18.84■□□□□ 0.61
HMGB3-205ENST00000455596 HNRNPCL1O60812 293 aaKnown RBP18.84■□□□□ 0.61
HMGB3-205ENST00000455596 ADAP00813 363 aa18.84■□□□□ 0.61
HMGB3-205ENST00000455596 THBS1P07996 1170 aa18.84■□□□□ 0.61
HMGB3-205ENST00000455596 HNRNPCL4P0DMR1 293 aa18.84■□□□□ 0.61
HMGB3-205ENST00000455596 LOXP28300 417 aaPredicted RBP18.84■□□□□ 0.61
HMGB3-205ENST00000455596 TACR3P29371 465 aa18.84■□□□□ 0.61
HMGB3-205ENST00000455596 SLC1A3P43003 542 aa18.84■□□□□ 0.61
HMGB3-205ENST00000455596 OR3A2P47893 321 aa18.84■□□□□ 0.61
HMGB3-205ENST00000455596 LARS2Q15031 903 aaKnown RBP18.84■□□□□ 0.61
HMGB3-205ENST00000455596 RPS26P11Q5JNZ5 115 aaPredicted RBP18.84■□□□□ 0.61
HMGB3-205ENST00000455596 ABLIM2Q6H8Q1 611 aa18.84■□□□□ 0.61
HMGB3-205ENST00000455596 WFDC8Q8IUA0 241 aa18.84■□□□□ 0.61
HMGB3-205ENST00000455596 TGIF2LYQ8IUE0 185 aa18.84■□□□□ 0.61
HMGB3-205ENST00000455596 DNAJA3Q96EY1 480 aa18.84■□□□□ 0.61
HMGB3-205ENST00000455596 RLIMQ9NVW2 624 aa18.84■□□□□ 0.61
HMGB3-205ENST00000455596 BEX4Q9NWD9 120 aaPredicted RBP18.84■□□□□ 0.61
HMGB3-205ENST00000455596 EMC3Q9P0I2 261 aa18.84■□□□□ 0.61
HMGB3-205ENST00000455596 TMEM181Q9P2C4 612 aa18.84■□□□□ 0.61
HMGB3-205ENST00000455596 PRDM4Q9UKN5 801 aa18.84■□□□□ 0.61
HMGB3-205ENST00000455596 ZNF232Q9UNY5 417 aa18.84■□□□□ 0.61
HMGB3-205ENST00000455596 ZNF443Q9Y2A4 671 aaPredicted RBP18.84■□□□□ 0.61
HMGB3-205ENST00000455596 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP18.83■□□□□ 0.6
HMGB3-205ENST00000455596 TMEM72A0PK05 275 aa18.83■□□□□ 0.6
HMGB3-205ENST00000455596 ZNF208O43345 1280 aa18.83■□□□□ 0.6
HMGB3-205ENST00000455596 KLF4O43474 513 aa18.83■□□□□ 0.6
HMGB3-205ENST00000455596 GKN3PP0CG01 181 aa18.83■□□□□ 0.6
HMGB3-205ENST00000455596 HOXB9P17482 250 aaPredicted RBP18.83■□□□□ 0.6
HMGB3-205ENST00000455596 IL32P24001 234 aa18.83■□□□□ 0.6
HMGB3-205ENST00000455596 ATP4BP51164 291 aa18.83■□□□□ 0.6
HMGB3-205ENST00000455596 MAP2K6P52564 334 aa18.83■□□□□ 0.6
HMGB3-205ENST00000455596 NR1H2P55055 460 aa18.83■□□□□ 0.6
HMGB3-205ENST00000455596 P2RY6Q15077 328 aa18.83■□□□□ 0.6
HMGB3-205ENST00000455596 PDK3Q15120 406 aa18.83■□□□□ 0.6
HMGB3-205ENST00000455596 ZSWIM7Q19AV6 140 aa18.83■□□□□ 0.6
HMGB3-205ENST00000455596 LRIF1Q5T3J3 769 aa18.83■□□□□ 0.6
HMGB3-205ENST00000455596 RNF220Q5VTB9 566 aa18.83■□□□□ 0.6
HMGB3-205ENST00000455596 Q6ZT83 130 aa18.83■□□□□ 0.6
HMGB3-205ENST00000455596 GALNT5Q7Z7M9 940 aa18.83■□□□□ 0.6
HMGB3-205ENST00000455596 PIGXQ8TBF5 258 aa18.83■□□□□ 0.6
HMGB3-205ENST00000455596 S100PBPQ96BU1 408 aa18.83■□□□□ 0.6
HMGB3-205ENST00000455596 ZNF775Q96BV0 537 aaPredicted RBP18.83■□□□□ 0.6
HMGB3-205ENST00000455596 ARMC7Q9H6L4 198 aa18.83■□□□□ 0.6
HMGB3-205ENST00000455596 UBTD1Q9HAC8 227 aa18.83■□□□□ 0.6
HMGB3-205ENST00000455596 TMEM45AQ9NWC5 275 aa18.83■□□□□ 0.6
HMGB3-205ENST00000455596 PRSS50Q9UI38 385 aa18.83■□□□□ 0.6
HMGB3-205ENST00000455596 TRAPPC4Q9Y296 219 aa18.83■□□□□ 0.6
HMGB3-205ENST00000455596 IFT52Q9Y366 437 aa18.83■□□□□ 0.6
HMGB3-205ENST00000455596 CELSR1Q9NYQ6 3014 aa18.83■□□□□ 0.6
HMGB3-205ENST00000455596 IGKV3D-15A0A087WSY6 115 aa18.82■□□□□ 0.6
HMGB3-205ENST00000455596 ZNF814B7Z6K7 855 aa18.82■□□□□ 0.6
HMGB3-205ENST00000455596 BMP2P12643 396 aa18.82■□□□□ 0.6
HMGB3-205ENST00000455596 CD99P14209 185 aa18.82■□□□□ 0.6
HMGB3-205ENST00000455596 FPR1P21462 350 aa18.82■□□□□ 0.6
HMGB3-205ENST00000455596 OR2B6P58173 313 aa18.82■□□□□ 0.6
HMGB3-205ENST00000455596 ITGADQ13349 1161 aa18.82■□□□□ 0.6
HMGB3-205ENST00000455596 SQLEQ14534 574 aa18.82■□□□□ 0.6
HMGB3-205ENST00000455596 TSC22D1Q15714 1073 aa18.82■□□□□ 0.6
HMGB3-205ENST00000455596 ACKR1Q16570 336 aa18.82■□□□□ 0.6
HMGB3-205ENST00000455596 AGKQ53H12 422 aa18.82■□□□□ 0.6
HMGB3-205ENST00000455596 PRAMEF8Q5VWM4 474 aa18.82■□□□□ 0.6
HMGB3-205ENST00000455596 PRAMEF7Q5VXH5 474 aa18.82■□□□□ 0.6
HMGB3-205ENST00000455596 KISS1RQ969F8 398 aaPredicted RBP18.82■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 53.4 ms