RNA–Protein interactions for RNA: ENST00000443711.2

USP40-206, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-206ENST00000443711 ZNF208O43345 1280 aa14.24□□□□□ -0.13
USP40-206ENST00000443711 HNRNPRO43390 633 aaKnown RBP14.24□□□□□ -0.13
USP40-206ENST00000443711 ENTPD5O75356 428 aa14.24□□□□□ -0.13
USP40-206ENST00000443711 PRSS23O95084 383 aa14.24□□□□□ -0.13
USP40-206ENST00000443711 THY1P04216 161 aa14.24□□□□□ -0.13
USP40-206ENST00000443711 H1F0P07305 194 aaKnown RBP14.24□□□□□ -0.13
USP40-206ENST00000443711 POU3F2P20265 443 aaPredicted RBP14.24□□□□□ -0.13
USP40-206ENST00000443711 IL11P20809 199 aa14.24□□□□□ -0.13
USP40-206ENST00000443711 STARP49675 285 aa14.24□□□□□ -0.13
USP40-206ENST00000443711 CLK1P49759 484 aaKnown RBP14.24□□□□□ -0.13
USP40-206ENST00000443711 TDGF1P3P51864 188 aa14.24□□□□□ -0.13
USP40-206ENST00000443711 BCL2A1Q16548 175 aa14.24□□□□□ -0.13
USP40-206ENST00000443711 ZFP1Q6P2D0 407 aa14.24□□□□□ -0.13
USP40-206ENST00000443711 LINC00114Q6XXX2 140 aa14.24□□□□□ -0.13
USP40-206ENST00000443711 LILRA2Q8N149 483 aa14.24□□□□□ -0.13
USP40-206ENST00000443711 ATP6V1C2Q8NEY4 427 aa14.24□□□□□ -0.13
USP40-206ENST00000443711 SARAFQ96BY9 339 aa14.24□□□□□ -0.13
USP40-206ENST00000443711 ANKRD19PQ9H560 264 aa14.24□□□□□ -0.13
USP40-206ENST00000443711 NMNAT1Q9HAN9 279 aaPredicted RBP14.24□□□□□ -0.13
USP40-206ENST00000443711 ZGRF1Q86YA3 2104 aa14.23□□□□□ -0.13
USP40-206ENST00000443711 TMEM72A0PK05 275 aa14.23□□□□□ -0.13
USP40-206ENST00000443711 OR14I1A6ND48 311 aa14.23□□□□□ -0.13
USP40-206ENST00000443711 A8MVM7 634 aa14.23□□□□□ -0.13
USP40-206ENST00000443711 ADAMDEC1O15204 470 aa14.23□□□□□ -0.13
USP40-206ENST00000443711 KRT36O76013 467 aa14.23□□□□□ -0.13
USP40-206ENST00000443711 GADD45GO95257 159 aa14.23□□□□□ -0.13
USP40-206ENST00000443711 CST1P01037 141 aa14.23□□□□□ -0.13
USP40-206ENST00000443711 TFPIP10646 304 aa14.23□□□□□ -0.13
USP40-206ENST00000443711 EDN3P14138 238 aa14.23□□□□□ -0.13
USP40-206ENST00000443711 SPIBQ01892 262 aa14.23□□□□□ -0.13
USP40-206ENST00000443711 CRYZQ08257 329 aaKnown RBP14.23□□□□□ -0.13
USP40-206ENST00000443711 FOXD4Q12950 439 aaPredicted RBP14.23□□□□□ -0.13
USP40-206ENST00000443711 TMEM176BQ3YBM2 270 aaPredicted RBP14.23□□□□□ -0.13
USP40-206ENST00000443711 OR2T5Q6IEZ7 315 aa14.23□□□□□ -0.13
USP40-206ENST00000443711 TTC33Q6PID6 262 aaPredicted RBP14.23□□□□□ -0.13
USP40-206ENST00000443711 C5orf46Q6UWT4 87 aa14.23□□□□□ -0.13
USP40-206ENST00000443711 ZNF605Q86T29 641 aa14.23□□□□□ -0.13
USP40-206ENST00000443711 OR2T29Q8NH02 315 aa14.23□□□□□ -0.13
USP40-206ENST00000443711 STK35Q8TDR2 534 aa14.23□□□□□ -0.13
USP40-206ENST00000443711 PYDC1Q8WXC3 89 aa14.23□□□□□ -0.13
USP40-206ENST00000443711 SMPDL3BQ92485 455 aa14.23□□□□□ -0.13
USP40-206ENST00000443711 STMN2Q93045 179 aa14.23□□□□□ -0.13
USP40-206ENST00000443711 DDIT4LQ96D03 193 aa14.23□□□□□ -0.13
USP40-206ENST00000443711 DHRS1Q96LJ7 313 aa14.23□□□□□ -0.13
USP40-206ENST00000443711 HS6ST2Q96MM7 605 aa14.23□□□□□ -0.13
USP40-206ENST00000443711 TIMP4Q99727 224 aa14.23□□□□□ -0.13
USP40-206ENST00000443711 PRSS27Q9BQR3 290 aa14.23□□□□□ -0.13
USP40-206ENST00000443711 POTEKPQ9BYX7 375 aa14.23□□□□□ -0.13
USP40-206ENST00000443711 SPRR3Q9UBC9 169 aa14.23□□□□□ -0.13
USP40-206ENST00000443711 TESMINQ9Y4I5 508 aa14.23□□□□□ -0.13
USP40-206ENST00000443711 SHANK1Q9Y566 2161 aa14.22□□□□□ -0.13
USP40-206ENST00000443711 A0A1W2PRQ8 180 aa14.22□□□□□ -0.13
USP40-206ENST00000443711 EIF4E1BA6NMX2 242 aaKnown RBP14.22□□□□□ -0.13
USP40-206ENST00000443711 NPIPA2E9PIF3 369 aa14.22□□□□□ -0.13
USP40-206ENST00000443711 NPIPA3F8WFD2 350 aa14.22□□□□□ -0.13
USP40-206ENST00000443711 GNGT2O14610 69 aa14.22□□□□□ -0.13
USP40-206ENST00000443711 BCKDKO14874 412 aa14.22□□□□□ -0.13
USP40-206ENST00000443711 TIPRLO75663 272 aa14.22□□□□□ -0.13
USP40-206ENST00000443711 OPN1LWP04000 364 aa14.22□□□□□ -0.13
USP40-206ENST00000443711 FCGR1AP12314 374 aa14.22□□□□□ -0.13
USP40-206ENST00000443711 CPN1P15169 458 aa14.22□□□□□ -0.13
USP40-206ENST00000443711 RRM2P31350 389 aa14.22□□□□□ -0.13
USP40-206ENST00000443711 RBM34P42696 430 aaKnown RBP14.22□□□□□ -0.13
USP40-206ENST00000443711 LHX2P50458 406 aa14.22□□□□□ -0.13
USP40-206ENST00000443711 HSF1Q00613 529 aa14.22□□□□□ -0.13
USP40-206ENST00000443711 DGCR6Q14129 220 aa14.22□□□□□ -0.13
USP40-206ENST00000443711 SOWAHCQ53LP3 525 aaPredicted RBP14.22□□□□□ -0.13
USP40-206ENST00000443711 SYT14P1Q58G82 188 aa14.22□□□□□ -0.13
USP40-206ENST00000443711 GFRALQ6UXV0 394 aa14.22□□□□□ -0.13
USP40-206ENST00000443711 NKAIN4Q8IVV8 208 aa14.22□□□□□ -0.13
USP40-206ENST00000443711 MEIOBQ8N635 442 aa14.22□□□□□ -0.13
USP40-206ENST00000443711 TMEM43Q9BTV4 400 aa14.22□□□□□ -0.13
USP40-206ENST00000443711 TMEM185BQ9H7F4 350 aa14.22□□□□□ -0.13
USP40-206ENST00000443711 MAN2C1Q9NTJ4 1040 aa14.22□□□□□ -0.13
USP40-206ENST00000443711 DNAJB9Q9UBS3 223 aa14.22□□□□□ -0.13
USP40-206ENST00000443711 B8ZZF3 427 aa14.21□□□□□ -0.13
USP40-206ENST00000443711 CLOCKO15516 846 aa14.21□□□□□ -0.13
USP40-206ENST00000443711 DEAF1O75398 565 aaPredicted RBP14.21□□□□□ -0.13
USP40-206ENST00000443711 ZNF708P17019 499 aa14.21□□□□□ -0.13
USP40-206ENST00000443711 FASP25445 335 aa14.21□□□□□ -0.13
USP40-206ENST00000443711 SFTPDP35247 375 aa14.21□□□□□ -0.13
USP40-206ENST00000443711 PTGS2P35354 604 aa14.21□□□□□ -0.13
USP40-206ENST00000443711 HMGA2P52926 109 aa14.21□□□□□ -0.13
USP40-206ENST00000443711 RBPJQ06330 500 aa14.21□□□□□ -0.13
USP40-206ENST00000443711 FGD3Q5JSP0 725 aa14.21□□□□□ -0.13
USP40-206ENST00000443711 DCST1Q5T197 706 aa14.21□□□□□ -0.13
USP40-206ENST00000443711 PDSS1Q5T2R2 415 aa14.21□□□□□ -0.13
USP40-206ENST00000443711 WLSQ5T9L3 541 aa14.21□□□□□ -0.13
USP40-206ENST00000443711 WDR88Q6ZMY6 472 aa14.21□□□□□ -0.13
USP40-206ENST00000443711 ESPNLQ6ZVH7 1005 aa14.21□□□□□ -0.13
USP40-206ENST00000443711 RRM2BQ7LG56 351 aa14.21□□□□□ -0.13
USP40-206ENST00000443711 PM20D2Q8IYS1 436 aa14.21□□□□□ -0.13
USP40-206ENST00000443711 UBQLNLQ8IYU4 475 aa14.21□□□□□ -0.13
USP40-206ENST00000443711 OR52J3Q8NH60 311 aa14.21□□□□□ -0.13
USP40-206ENST00000443711 TMEM239Q8WW34 195 aa14.21□□□□□ -0.13
USP40-206ENST00000443711 WDYHV1Q96HA8 205 aa14.21□□□□□ -0.13
USP40-206ENST00000443711 KLHL15Q96M94 604 aa14.21□□□□□ -0.13
USP40-206ENST00000443711 EPYCQ99645 322 aa14.21□□□□□ -0.13
USP40-206ENST00000443711 SLC19A3Q9BZV2 496 aa14.21□□□□□ -0.13
USP40-206ENST00000443711 OR11A1Q9GZK7 315 aa14.21□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms