RNA–Protein interactions for RNA: ENST00000428026.6

PTPRU-204, Transcript of protein tyrosine phosphatase, receptor type U, humanhuman

TSL 1 (best) BASIC

Gene PTPRU, Length 5,550 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRU-204ENST00000428026 STK17BO94768 372 aa13.55□□□□□ -0.24
PTPRU-204ENST00000428026 SIX6O95475 246 aa13.55□□□□□ -0.24
PTPRU-204ENST00000428026 JUNDP17535 347 aa13.55□□□□□ -0.24
PTPRU-204ENST00000428026 SFTPDP35247 375 aa13.55□□□□□ -0.24
PTPRU-204ENST00000428026 MEF2DQ14814 521 aa13.55□□□□□ -0.24
PTPRU-204ENST00000428026 TMEM240Q5SV17 173 aa13.55□□□□□ -0.24
PTPRU-204ENST00000428026 ZNF704Q6ZNC4 412 aaPredicted RBP13.55□□□□□ -0.24
PTPRU-204ENST00000428026 ACOT11Q8WXI4 607 aaPredicted RBP13.55□□□□□ -0.24
PTPRU-204ENST00000428026 DIO2Q92813 273 aa13.55□□□□□ -0.24
PTPRU-204ENST00000428026 INTS14Q96SY0 518 aa13.55□□□□□ -0.24
PTPRU-204ENST00000428026 PSORS1C1Q9UIG5 152 aa13.55□□□□□ -0.24
PTPRU-204ENST00000428026 SHOXO15266 292 aa13.54□□□□□ -0.24
PTPRU-204ENST00000428026 SMAD6O43541 496 aaKnown RBP13.54□□□□□ -0.24
PTPRU-204ENST00000428026 UGDHO60701 494 aa13.54□□□□□ -0.24
PTPRU-204ENST00000428026 LDB3O75112 727 aa13.54□□□□□ -0.24
PTPRU-204ENST00000428026 GIPRP48546 466 aa13.54□□□□□ -0.24
PTPRU-204ENST00000428026 CCR6P51684 374 aa13.54□□□□□ -0.24
PTPRU-204ENST00000428026 TAS2R19P59542 299 aa13.54□□□□□ -0.24
PTPRU-204ENST00000428026 ADARB1P78563 741 aaKnown RBP13.54□□□□□ -0.24
PTPRU-204ENST00000428026 ESCO2Q56NI9 601 aa13.54□□□□□ -0.24
PTPRU-204ENST00000428026 PXDC1Q5TGL8 231 aa13.54□□□□□ -0.24
PTPRU-204ENST00000428026 PTCRAQ6ISU1 281 aaPredicted RBP13.54□□□□□ -0.24
PTPRU-204ENST00000428026 SULF2Q8IWU5 870 aa13.54□□□□□ -0.24
PTPRU-204ENST00000428026 CMTM1Q8IZ96 169 aa13.54□□□□□ -0.24
PTPRU-204ENST00000428026 SPIN2AQ99865 258 aa13.54□□□□□ -0.24
PTPRU-204ENST00000428026 SPIN2BQ9BPZ2 258 aa13.54□□□□□ -0.24
PTPRU-204ENST00000428026 SCGB1D1O95968 90 aa13.54□□□□□ -0.24
PTPRU-204ENST00000428026 ZNF43P17038 809 aa13.54□□□□□ -0.24
PTPRU-204ENST00000428026 SHC1P29353 583 aa13.54□□□□□ -0.24
PTPRU-204ENST00000428026 PRKAR1BP31321 381 aa13.54□□□□□ -0.24
PTPRU-204ENST00000428026 PIGAP37287 484 aa13.54□□□□□ -0.24
PTPRU-204ENST00000428026 CX3CR1P49238 355 aa13.54□□□□□ -0.24
PTPRU-204ENST00000428026 VEGFCP49767 419 aa13.54□□□□□ -0.24
PTPRU-204ENST00000428026 PSPHP78330 225 aa13.54□□□□□ -0.24
PTPRU-204ENST00000428026 UBE2NLQ5JXB2 153 aa13.54□□□□□ -0.24
PTPRU-204ENST00000428026 ANKRD33Q7Z3H0 272 aa13.54□□□□□ -0.24
PTPRU-204ENST00000428026 OCEL1Q9H607 264 aa13.54□□□□□ -0.24
PTPRU-204ENST00000428026 PELI2Q9HAT8 420 aa13.54□□□□□ -0.24
PTPRU-204ENST00000428026 ABRACLQ9P1F3 81 aa13.54□□□□□ -0.24
PTPRU-204ENST00000428026 SUSD2Q9UGT4 822 aa13.54□□□□□ -0.24
PTPRU-204ENST00000428026 TEX51A0A1B0GUA7 166 aa13.54□□□□□ -0.24
PTPRU-204ENST00000428026 ANKRD34BA5PLL1 514 aa13.54□□□□□ -0.24
PTPRU-204ENST00000428026 JMJD7P0C870 316 aa13.54□□□□□ -0.24
PTPRU-204ENST00000428026 SMIM18P0DKX4 95 aa13.54□□□□□ -0.24
PTPRU-204ENST00000428026 YIF1BQ5BJH7 314 aa13.54□□□□□ -0.24
PTPRU-204ENST00000428026 PRAMEF8Q5VWM4 474 aa13.54□□□□□ -0.24
PTPRU-204ENST00000428026 PRAMEF7Q5VXH5 474 aa13.54□□□□□ -0.24
PTPRU-204ENST00000428026 TBPL2Q6SJ96 375 aa13.54□□□□□ -0.24
PTPRU-204ENST00000428026 COX15Q7KZN9 410 aa13.54□□□□□ -0.24
PTPRU-204ENST00000428026 SLC46A3Q7Z3Q1 461 aa13.54□□□□□ -0.24
PTPRU-204ENST00000428026 LACC1Q8IV20 430 aa13.54□□□□□ -0.24
PTPRU-204ENST00000428026 OR2T11Q8NH01 316 aa13.54□□□□□ -0.24
PTPRU-204ENST00000428026 TRMT2BQ96GJ1 504 aaKnown RBP13.54□□□□□ -0.24
PTPRU-204ENST00000428026 TUBB1Q9H4B7 451 aa13.54□□□□□ -0.24
PTPRU-204ENST00000428026 OR52A4PA6NMU1 304 aa13.54□□□□□ -0.24
PTPRU-204ENST00000428026 KRBOX1C9JBD0 128 aa13.54□□□□□ -0.24
PTPRU-204ENST00000428026 ANKRD28O15084 1053 aa13.54□□□□□ -0.24
PTPRU-204ENST00000428026 SEMA4FO95754 770 aa13.54□□□□□ -0.24
PTPRU-204ENST00000428026 TXNDC12O95881 172 aa13.54□□□□□ -0.24
PTPRU-204ENST00000428026 ENDOUP21128 410 aaKnown RBP13.54□□□□□ -0.24
PTPRU-204ENST00000428026 NME2P22392 152 aa13.54□□□□□ -0.24
PTPRU-204ENST00000428026 TACR1P25103 407 aa13.54□□□□□ -0.24
PTPRU-204ENST00000428026 TNK1Q13470 666 aa13.54□□□□□ -0.24
PTPRU-204ENST00000428026 CDRT4Q8N9R6 151 aa13.54□□□□□ -0.24
PTPRU-204ENST00000428026 IL17RCQ8NAC3 791 aa13.54□□□□□ -0.24
PTPRU-204ENST00000428026 OR4M1Q8NGD0 313 aa13.54□□□□□ -0.24
PTPRU-204ENST00000428026 ZNF583Q96ND8 569 aa13.54□□□□□ -0.24
PTPRU-204ENST00000428026 MRI1Q9BV20 369 aa13.54□□□□□ -0.24
PTPRU-204ENST00000428026 ZNF160Q9HCG1 818 aa13.54□□□□□ -0.24
PTPRU-204ENST00000428026 STARD5Q9NSY2 213 aa13.54□□□□□ -0.24
PTPRU-204ENST00000428026 CA5BQ9Y2D0 317 aa13.54□□□□□ -0.24
PTPRU-204ENST00000428026 SDC3O75056 442 aa13.53□□□□□ -0.24
PTPRU-204ENST00000428026 SEC14L2O76054 403 aa13.53□□□□□ -0.24
PTPRU-204ENST00000428026 ITGB2P05107 769 aa13.53□□□□□ -0.24
PTPRU-204ENST00000428026 ZNF140P52738 457 aaPredicted RBP13.53□□□□□ -0.24
PTPRU-204ENST00000428026 KIAA1024LP59773 190 aa13.53□□□□□ -0.24
PTPRU-204ENST00000428026 SEC61A1P61619 476 aaKnown RBP13.53□□□□□ -0.24
PTPRU-204ENST00000428026 ZNF100Q8IYN0 542 aa13.53□□□□□ -0.24
PTPRU-204ENST00000428026 SPPL3Q8TCT6 385 aa13.53□□□□□ -0.24
PTPRU-204ENST00000428026 RBPMSQ93062 196 aaKnown RBP13.53□□□□□ -0.24
PTPRU-204ENST00000428026 CPPED1Q9BRF8 314 aaPredicted RBP13.53□□□□□ -0.24
PTPRU-204ENST00000428026 NPAP1Q9NZP6 1156 aa13.53□□□□□ -0.24
PTPRU-204ENST00000428026 VDAC3Q9Y277 283 aa13.53□□□□□ -0.24
PTPRU-204ENST00000428026 MDFIC2A0A1B0GVS7 189 aa13.53□□□□□ -0.24
PTPRU-204ENST00000428026 ACOT8O14734 319 aa13.53□□□□□ -0.24
PTPRU-204ENST00000428026 C5AR1P21730 350 aa13.53□□□□□ -0.24
PTPRU-204ENST00000428026 GABRA5P31644 462 aa13.53□□□□□ -0.24
PTPRU-204ENST00000428026 LIPAP38571 399 aa13.53□□□□□ -0.24
PTPRU-204ENST00000428026 UBE2KP61086 200 aa13.53□□□□□ -0.24
PTPRU-204ENST00000428026 CTSL3PQ5NE16 218 aa13.53□□□□□ -0.24
PTPRU-204ENST00000428026 HACD4Q5VWC8 232 aa13.53□□□□□ -0.24
PTPRU-204ENST00000428026 PAPD4Q6PIY7 484 aaKnown RBP13.53□□□□□ -0.24
PTPRU-204ENST00000428026 FAM83HQ6ZRV2 1179 aaPredicted RBP13.53□□□□□ -0.24
PTPRU-204ENST00000428026 PGAP3Q96FM1 320 aaPredicted RBP13.53□□□□□ -0.24
PTPRU-204ENST00000428026 PKMYT1Q99640 499 aa13.53□□□□□ -0.24
PTPRU-204ENST00000428026 NAA11Q9BSU3 229 aaPredicted RBP13.53□□□□□ -0.24
PTPRU-204ENST00000428026 LOC101059915A0A1B0GWI6 518 aaPredicted RBP13.53□□□□□ -0.24
PTPRU-204ENST00000428026 TGM6O95932 706 aa13.53□□□□□ -0.24
PTPRU-204ENST00000428026 PSMB1P20618 241 aaKnown RBP13.53□□□□□ -0.24
PTPRU-204ENST00000428026 DRD1P21728 446 aa13.53□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms