RNA–Protein interactions for RNA: ENST00000424265.5

USP54-205, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 5,201 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-205ENST00000424265 CORO2AQ92828 525 aa9.13□□□□□ -0.95
USP54-205ENST00000424265 RNF31Q96EP0 1072 aa9.13□□□□□ -0.95
USP54-205ENST00000424265 ZC3HAV1LQ96H79 300 aaKnown RBP9.13□□□□□ -0.95
USP54-205ENST00000424265 PKP4Q99569 1192 aa9.13□□□□□ -0.95
USP54-205ENST00000424265 PARD6AQ9NPB6 346 aa9.13□□□□□ -0.95
USP54-205ENST00000424265 FBXO4Q9UKT5 387 aa9.13□□□□□ -0.95
USP54-205ENST00000424265 SLC19A2O60779 497 aa9.13□□□□□ -0.95
USP54-205ENST00000424265 TXNDC12O95881 172 aa9.13□□□□□ -0.95
USP54-205ENST00000424265 SLC6A2P23975 617 aa9.13□□□□□ -0.95
USP54-205ENST00000424265 ACVR2AP27037 513 aa9.13□□□□□ -0.95
USP54-205ENST00000424265 CDKN1CP49918 316 aaPredicted RBP9.13□□□□□ -0.95
USP54-205ENST00000424265 CLCN7P51798 805 aa9.13□□□□□ -0.95
USP54-205ENST00000424265 NDUFA6P56556 154 aa9.13□□□□□ -0.95
USP54-205ENST00000424265 REEP5Q00765 189 aa9.13□□□□□ -0.95
USP54-205ENST00000424265 ZP2Q05996 745 aa9.13□□□□□ -0.95
USP54-205ENST00000424265 ATPAF1Q5TC12 328 aaPredicted RBP9.13□□□□□ -0.95
USP54-205ENST00000424265 OR52W1Q6IF63 320 aa9.13□□□□□ -0.95
USP54-205ENST00000424265 DEGS2Q6QHC5 323 aa9.13□□□□□ -0.95
USP54-205ENST00000424265 UQCC3Q6UW78 93 aa9.13□□□□□ -0.95
USP54-205ENST00000424265 NXPE4Q6UWF7 544 aa9.13□□□□□ -0.95
USP54-205ENST00000424265 GDPGP1Q6ZNW5 385 aa9.13□□□□□ -0.95
USP54-205ENST00000424265 CDK20Q8IZL9 346 aa9.13□□□□□ -0.95
USP54-205ENST00000424265 OR4F6Q8NGB9 312 aa9.13□□□□□ -0.95
USP54-205ENST00000424265 CREB3L4Q8TEY5 395 aa9.13□□□□□ -0.95
USP54-205ENST00000424265 SLC39A7Q92504 469 aa9.13□□□□□ -0.95
USP54-205ENST00000424265 CD180Q99467 661 aa9.13□□□□□ -0.95
USP54-205ENST00000424265 PDE7BQ9NP56 450 aa9.13□□□□□ -0.95
USP54-205ENST00000424265 PAPLNO95428 1278 aa9.12□□□□□ -0.95
USP54-205ENST00000424265 HOXC12P31275 282 aa9.12□□□□□ -0.95
USP54-205ENST00000424265 CLN3Q13286 438 aa9.12□□□□□ -0.95
USP54-205ENST00000424265 AGERQ15109 404 aa9.12□□□□□ -0.95
USP54-205ENST00000424265 ZNF239Q16600 458 aaKnown RBP9.12□□□□□ -0.95
USP54-205ENST00000424265 NCMAPQ5T1S8 102 aa9.12□□□□□ -0.95
USP54-205ENST00000424265 CLEC14AQ86T13 490 aa9.12□□□□□ -0.95
USP54-205ENST00000424265 OR5K2Q8NHB8 316 aa9.12□□□□□ -0.95
USP54-205ENST00000424265 ARL11Q969Q4 196 aa9.12□□□□□ -0.95
USP54-205ENST00000424265 ZBED6CLQ96FA7 236 aaPredicted RBP9.12□□□□□ -0.95
USP54-205ENST00000424265 PPM1MQ96MI6 270 aa9.12□□□□□ -0.95
USP54-205ENST00000424265 LOC730098B7Z3J9 87 aa9.12□□□□□ -0.95
USP54-205ENST00000424265 OR7A17O14581 309 aa9.12□□□□□ -0.95
USP54-205ENST00000424265 ALDOCP09972 364 aaKnown RBP9.12□□□□□ -0.95
USP54-205ENST00000424265 CLDN2P57739 230 aa9.12□□□□□ -0.95
USP54-205ENST00000424265 EIF4E3Q8N5X7 224 aaKnown RBP9.12□□□□□ -0.95
USP54-205ENST00000424265 ADPRHL1Q8NDY3 354 aa9.12□□□□□ -0.95
USP54-205ENST00000424265 DNAAF1Q8NEP3 725 aa9.12□□□□□ -0.95
USP54-205ENST00000424265 C3orf30Q96M34 536 aa9.12□□□□□ -0.95
USP54-205ENST00000424265 ATG101Q9BSB4 218 aa9.12□□□□□ -0.95
USP54-205ENST00000424265 ZCCHC4Q9H5U6 513 aa9.12□□□□□ -0.95
USP54-205ENST00000424265 MEAF6Q9HAF1 191 aa9.12□□□□□ -0.95
USP54-205ENST00000424265 KRCC1Q9NPI7 259 aaPredicted RBP9.12□□□□□ -0.95
USP54-205ENST00000424265 GPR83Q9NYM4 423 aa9.12□□□□□ -0.95
USP54-205ENST00000424265 PCDHGA6Q9Y5G7 932 aa9.12□□□□□ -0.95
USP54-205ENST00000424265 PCDHGA5Q9Y5G8 931 aa9.12□□□□□ -0.95
USP54-205ENST00000424265 PATJQ8NI35 1801 aa9.12□□□□□ -0.95
USP54-205ENST00000424265 ZNF638Q14966 1978 aaKnown RBP9.12□□□□□ -0.95
USP54-205ENST00000424265 M0R296 226 aa9.12□□□□□ -0.95
USP54-205ENST00000424265 SOX15O60248 233 aa9.12□□□□□ -0.95
USP54-205ENST00000424265 SCAF4O95104 1147 aaKnown RBP9.12□□□□□ -0.95
USP54-205ENST00000424265 SCELO95171 688 aa9.12□□□□□ -0.95
USP54-205ENST00000424265 G6PDP11413 515 aa9.12□□□□□ -0.95
USP54-205ENST00000424265 OR2B8PP59922 312 aa9.12□□□□□ -0.95
USP54-205ENST00000424265 EMX2Q04743 252 aa9.12□□□□□ -0.95
USP54-205ENST00000424265 Q5PR19 223 aa9.12□□□□□ -0.95
USP54-205ENST00000424265 GRHL2Q6ISB3 625 aa9.12□□□□□ -0.95
USP54-205ENST00000424265 CYP4Z1Q86W10 505 aa9.12□□□□□ -0.95
USP54-205ENST00000424265 LDLRAD3Q86YD5 345 aa9.12□□□□□ -0.95
USP54-205ENST00000424265 WDFY2Q96P53 400 aa9.12□□□□□ -0.95
USP54-205ENST00000424265 LRRC3BQ96PB8 259 aa9.12□□□□□ -0.95
USP54-205ENST00000424265 NUDT16L1Q9BRJ7 211 aaKnown RBP9.12□□□□□ -0.95
USP54-205ENST00000424265 RSRP1Q9BUV0 290 aa9.12□□□□□ -0.95
USP54-205ENST00000424265 POLR2J2Q9GZM3 115 aaKnown RBP9.12□□□□□ -0.95
USP54-205ENST00000424265 ZFP64Q9NPA5 681 aa9.12□□□□□ -0.95
USP54-205ENST00000424265 GALPQ9UBC7 116 aa9.12□□□□□ -0.95
USP54-205ENST00000424265 GAB2Q9UQC2 676 aa9.12□□□□□ -0.95
USP54-205ENST00000424265 IQCMA0A1B0GVH7 501 aa9.12□□□□□ -0.95
USP54-205ENST00000424265 NDUFS8O00217 210 aa9.12□□□□□ -0.95
USP54-205ENST00000424265 OR2T1O43869 369 aa9.12□□□□□ -0.95
USP54-205ENST00000424265 SIX3O95343 332 aaPredicted RBP9.12□□□□□ -0.95
USP54-205ENST00000424265 ABCD3P28288 659 aa9.12□□□□□ -0.95
USP54-205ENST00000424265 HCCSP53701 268 aa9.12□□□□□ -0.95
USP54-205ENST00000424265 OR4D1Q15615 310 aa9.12□□□□□ -0.95
USP54-205ENST00000424265 ZNF789Q5FWF6 425 aa9.12□□□□□ -0.95
USP54-205ENST00000424265 CLEC6AQ6EIG7 209 aa9.12□□□□□ -0.95
USP54-205ENST00000424265 METTL21AQ8WXB1 218 aa9.12□□□□□ -0.95
USP54-205ENST00000424265 RLN3Q8WXF3 142 aa9.12□□□□□ -0.95
USP54-205ENST00000424265 NDC1Q9BTX1 674 aa9.12□□□□□ -0.95
USP54-205ENST00000424265 ACTL8Q9H568 366 aa9.12□□□□□ -0.95
USP54-205ENST00000424265 TAAR2Q9P1P5 351 aa9.12□□□□□ -0.95
USP54-205ENST00000424265 IL17BQ9UHF5 180 aa9.12□□□□□ -0.95
USP54-205ENST00000424265 PLSCR5A0PG75 271 aa9.11□□□□□ -0.95
USP54-205ENST00000424265 C9J4A7 227 aa9.11□□□□□ -0.95
USP54-205ENST00000424265 ARNTLO00327 626 aa9.11□□□□□ -0.95
USP54-205ENST00000424265 TCF21O43680 179 aa9.11□□□□□ -0.95
USP54-205ENST00000424265 ARRB2P32121 409 aa9.11□□□□□ -0.95
USP54-205ENST00000424265 DCTP40126 519 aa9.11□□□□□ -0.95
USP54-205ENST00000424265 POLR2JP52435 117 aaKnown RBP9.11□□□□□ -0.95
USP54-205ENST00000424265 MTPNP58546 118 aa9.11□□□□□ -0.95
USP54-205ENST00000424265 ZNF79Q15937 498 aa9.11□□□□□ -0.95
USP54-205ENST00000424265 UNC50Q53HI1 259 aa9.11□□□□□ -0.95
USP54-205ENST00000424265 MANEAQ5SRI9 462 aa9.11□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms