RNA–Protein interactions for RNA: ENST00000422491.6

USP54-204, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best) BASIC

Gene USP54, Length 2,777 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-204ENST00000422491 NTSP30990 170 aa9.89□□□□□ -0.83
USP54-204ENST00000422491 ERVK-25P63136 954 aa9.89□□□□□ -0.83
USP54-204ENST00000422491 FOXK2Q01167 660 aa9.89□□□□□ -0.83
USP54-204ENST00000422491 LTB4RQ15722 352 aa9.89□□□□□ -0.83
USP54-204ENST00000422491 ZNF750Q32MQ0 723 aa9.89□□□□□ -0.83
USP54-204ENST00000422491 HES5Q5TA89 166 aa9.89□□□□□ -0.83
USP54-204ENST00000422491 STPG1Q5TH74 334 aa9.89□□□□□ -0.83
USP54-204ENST00000422491 TPGS2Q68CL5 300 aa9.89□□□□□ -0.83
USP54-204ENST00000422491 C18orf63Q68DL7 685 aa9.89□□□□□ -0.83
USP54-204ENST00000422491 THSD4Q6ZMP0 1018 aa9.89□□□□□ -0.83
USP54-204ENST00000422491 HTR3DQ70Z44 454 aa9.89□□□□□ -0.83
USP54-204ENST00000422491 C17orf64Q86WR6 236 aa9.89□□□□□ -0.83
USP54-204ENST00000422491 OR8K3Q8NH51 312 aa9.89□□□□□ -0.83
USP54-204ENST00000422491 PELI1Q96FA3 418 aa9.89□□□□□ -0.83
USP54-204ENST00000422491 HS6ST2Q96MM7 605 aa9.89□□□□□ -0.83
USP54-204ENST00000422491 BBS4Q96RK4 519 aa9.89□□□□□ -0.83
USP54-204ENST00000422491 PRSS27Q9BQR3 290 aa9.89□□□□□ -0.83
USP54-204ENST00000422491 PBX4Q9BYU1 374 aa9.89□□□□□ -0.83
USP54-204ENST00000422491 KLHL28Q9NXS3 571 aa9.89□□□□□ -0.83
USP54-204ENST00000422491 FOXJ3Q9UPW0 622 aa9.89□□□□□ -0.83
USP54-204ENST00000422491 MDC1Q14676 2089 aaKnown RBP9.88□□□□□ -0.83
USP54-204ENST00000422491 MYO10Q9HD67 2058 aa9.88□□□□□ -0.83
USP54-204ENST00000422491 PQLC2LA1A4F0 135 aa9.88□□□□□ -0.83
USP54-204ENST00000422491 IFITM5A6NNB3 132 aa9.88□□□□□ -0.83
USP54-204ENST00000422491 FCMRO60667 390 aa9.88□□□□□ -0.83
USP54-204ENST00000422491 TRA2BP62995 288 aaKnown RBP9.88□□□□□ -0.83
USP54-204ENST00000422491 COL9A2Q14055 689 aaPredicted RBP9.88□□□□□ -0.83
USP54-204ENST00000422491 TP53I3Q53FA7 332 aa9.88□□□□□ -0.83
USP54-204ENST00000422491 ASTLQ6HA08 431 aaPredicted RBP9.88□□□□□ -0.83
USP54-204ENST00000422491 MOB3CQ70IA8 216 aa9.88□□□□□ -0.83
USP54-204ENST00000422491 FCRLAQ7L513 359 aa9.88□□□□□ -0.83
USP54-204ENST00000422491 TMEM17Q86X19 198 aa9.88□□□□□ -0.83
USP54-204ENST00000422491 TRAPPC5Q8IUR0 188 aa9.88□□□□□ -0.83
USP54-204ENST00000422491 OR2AK2Q8NG84 335 aa9.88□□□□□ -0.83
USP54-204ENST00000422491 OR56A1Q8NGH5 318 aa9.88□□□□□ -0.83
USP54-204ENST00000422491 PAWRQ96IZ0 340 aaKnown RBP9.88□□□□□ -0.83
USP54-204ENST00000422491 CD180Q99467 661 aa9.88□□□□□ -0.83
USP54-204ENST00000422491 TTTY10Q9BZA0 68 aa9.88□□□□□ -0.83
USP54-204ENST00000422491 MFFQ9GZY8 342 aa9.88□□□□□ -0.83
USP54-204ENST00000422491 PELI2Q9HAT8 420 aa9.88□□□□□ -0.83
USP54-204ENST00000422491 KRCC1Q9NPI7 259 aaPredicted RBP9.88□□□□□ -0.83
USP54-204ENST00000422491 HAO2Q9NYQ3 351 aa9.88□□□□□ -0.83
USP54-204ENST00000422491 MLXQ9UH92 298 aa9.88□□□□□ -0.83
USP54-204ENST00000422491 SLC25A13Q9UJS0 675 aa9.88□□□□□ -0.83
USP54-204ENST00000422491 OBSL1O75147 1896 aa9.88□□□□□ -0.83
USP54-204ENST00000422491 TCF20Q9UGU0 1960 aaKnown RBP9.88□□□□□ -0.83
USP54-204ENST00000422491 ARPC4-TTLL3A0A0A6YYG9 625 aa9.88□□□□□ -0.83
USP54-204ENST00000422491 A0A1B0GW55 424 aa9.88□□□□□ -0.83
USP54-204ENST00000422491 UBE2QL1A1L167 161 aa9.88□□□□□ -0.83
USP54-204ENST00000422491 FAM86C2PA6NEL3 165 aa9.88□□□□□ -0.83
USP54-204ENST00000422491 PIN1P1O15428 100 aa9.88□□□□□ -0.83
USP54-204ENST00000422491 MAGEB4O15481 346 aaPredicted RBP9.88□□□□□ -0.83
USP54-204ENST00000422491 FMO6PO60774 539 aa9.88□□□□□ -0.83
USP54-204ENST00000422491 ZNF254O75437 659 aa9.88□□□□□ -0.83
USP54-204ENST00000422491 LEFTY1O75610 366 aa9.88□□□□□ -0.83
USP54-204ENST00000422491 EFEMP2O95967 443 aa9.88□□□□□ -0.83
USP54-204ENST00000422491 DUX4L2P0CJ85 424 aa9.88□□□□□ -0.83
USP54-204ENST00000422491 DUX4L3P0CJ86 424 aa9.88□□□□□ -0.83
USP54-204ENST00000422491 DUX4L4P0CJ87 422 aa9.88□□□□□ -0.83
USP54-204ENST00000422491 DUX4L5P0CJ88 424 aa9.88□□□□□ -0.83
USP54-204ENST00000422491 DUX4L6P0CJ89 424 aa9.88□□□□□ -0.83
USP54-204ENST00000422491 DUX4L7P0CJ90 424 aa9.88□□□□□ -0.83
USP54-204ENST00000422491 BMP7P18075 431 aa9.88□□□□□ -0.83
USP54-204ENST00000422491 RAB13P51153 203 aa9.88□□□□□ -0.83
USP54-204ENST00000422491 ART1P52961 327 aa9.88□□□□□ -0.83
USP54-204ENST00000422491 GMFBP60983 142 aa9.88□□□□□ -0.83
USP54-204ENST00000422491 RPS15P62841 145 aaKnown RBP9.88□□□□□ -0.83
USP54-204ENST00000422491 ACTC1P68032 377 aa9.88□□□□□ -0.83
USP54-204ENST00000422491 ACTA1P68133 377 aa9.88□□□□□ -0.83
USP54-204ENST00000422491 MRPS10P82664 201 aaKnown RBP9.88□□□□□ -0.83
USP54-204ENST00000422491 REEP5Q00765 189 aa9.88□□□□□ -0.83
USP54-204ENST00000422491 OR4C11Q6IEV9 310 aa9.88□□□□□ -0.83
USP54-204ENST00000422491 LRRN1Q6UXK5 716 aa9.88□□□□□ -0.83
USP54-204ENST00000422491 UNQ9370/PRO34162Q6UXP9 181 aa9.88□□□□□ -0.83
USP54-204ENST00000422491 WDR88Q6ZMY6 472 aa9.88□□□□□ -0.83
USP54-204ENST00000422491 ZNF793Q6ZN11 406 aa9.88□□□□□ -0.83
USP54-204ENST00000422491 SOCS4Q8WXH5 440 aa9.88□□□□□ -0.83
USP54-204ENST00000422491 ZNF707Q96C28 371 aaPredicted RBP9.88□□□□□ -0.83
USP54-204ENST00000422491 CNRIP1Q96F85 164 aaPredicted RBP9.88□□□□□ -0.83
USP54-204ENST00000422491 VN1R3Q9BXE9 311 aa9.88□□□□□ -0.83
USP54-204ENST00000422491 AICDAQ9GZX7 198 aa9.88□□□□□ -0.83
USP54-204ENST00000422491 C20orf141Q9NUB4 165 aa9.88□□□□□ -0.83
USP54-204ENST00000422491 TAS2R3Q9NYW6 316 aa9.88□□□□□ -0.83
USP54-204ENST00000422491 DUX4Q9UBX2 424 aa9.88□□□□□ -0.83
USP54-204ENST00000422491 TP53BP1Q12888 1972 aaPredicted RBP9.88□□□□□ -0.83
USP54-204ENST00000422491 TMEM272A0A1B0GTI8 110 aa9.87□□□□□ -0.83
USP54-204ENST00000422491 A0A1W2PS29 197 aa9.87□□□□□ -0.83
USP54-204ENST00000422491 GOSR2O14653 212 aa9.87□□□□□ -0.83
USP54-204ENST00000422491 ERAL1O75616 437 aaKnown RBP9.87□□□□□ -0.83
USP54-204ENST00000422491 ATG12O94817 140 aa9.87□□□□□ -0.83
USP54-204ENST00000422491 CKMP06732 381 aa9.87□□□□□ -0.83
USP54-204ENST00000422491 SRMP19623 302 aa9.87□□□□□ -0.83
USP54-204ENST00000422491 MEOX2P50222 304 aa9.87□□□□□ -0.83
USP54-204ENST00000422491 UBE2MP61081 183 aaKnown RBP9.87□□□□□ -0.83
USP54-204ENST00000422491 LGALS3BPQ08380 585 aa9.87□□□□□ -0.83
USP54-204ENST00000422491 CBFBQ13951 182 aa9.87□□□□□ -0.83
USP54-204ENST00000422491 RPE65Q16518 533 aa9.87□□□□□ -0.83
USP54-204ENST00000422491 ZNF528Q3MIS6 628 aa9.87□□□□□ -0.83
USP54-204ENST00000422491 FAM74A1Q5RGS3 127 aa9.87□□□□□ -0.83
USP54-204ENST00000422491 TMEM69Q5SWH9 247 aa9.87□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 49.1 ms