RNA–Protein interactions for RNA: ENST00000417656.6

SKA1-203, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2 BASIC

Gene SKA1, Length 1,095 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-203ENST00000417656 SERINC1Q9NRX5 453 aa11.2□□□□□ -0.62
SKA1-203ENST00000417656 KLHL28Q9NXS3 571 aa11.2□□□□□ -0.62
SKA1-203ENST00000417656 TESQ9UGI8 421 aaKnown RBP11.2□□□□□ -0.62
SKA1-203ENST00000417656 PACSIN3Q9UKS6 424 aa11.2□□□□□ -0.62
SKA1-203ENST00000417656 TMED7Q9Y3B3 224 aa11.2□□□□□ -0.62
SKA1-203ENST00000417656 ZNF175Q9Y473 711 aa11.2□□□□□ -0.62
SKA1-203ENST00000417656 SPIN1Q9Y657 262 aaPredicted RBP11.2□□□□□ -0.62
SKA1-203ENST00000417656 CACNA1CQ13936 2221 aa11.19□□□□□ -0.62
SKA1-203ENST00000417656 TMEM72A0PK05 275 aa11.19□□□□□ -0.62
SKA1-203ENST00000417656 HSPB2A8KAH6 182 aa11.19□□□□□ -0.62
SKA1-203ENST00000417656 SYT5O00445 386 aa11.19□□□□□ -0.62
SKA1-203ENST00000417656 AQP8O94778 261 aa11.19□□□□□ -0.62
SKA1-203ENST00000417656 CLDN14O95500 239 aa11.19□□□□□ -0.62
SKA1-203ENST00000417656 TMIGD3P0DMS9 266 aaPredicted RBP11.19□□□□□ -0.62
SKA1-203ENST00000417656 TFPIP10646 304 aa11.19□□□□□ -0.62
SKA1-203ENST00000417656 HTR3AP46098 478 aa11.19□□□□□ -0.62
SKA1-203ENST00000417656 KCNJ5P48544 419 aa11.19□□□□□ -0.62
SKA1-203ENST00000417656 SLC25A3Q00325 362 aa11.19□□□□□ -0.62
SKA1-203ENST00000417656 FOXF2Q12947 444 aa11.19□□□□□ -0.62
SKA1-203ENST00000417656 HSPB2Q16082 182 aa11.19□□□□□ -0.62
SKA1-203ENST00000417656 PDSS1Q5T2R2 415 aa11.19□□□□□ -0.62
SKA1-203ENST00000417656 ADGRG3Q86Y34 549 aa11.19□□□□□ -0.62
SKA1-203ENST00000417656 MED12LQ86YW9 2145 aa11.19□□□□□ -0.62
SKA1-203ENST00000417656 LIX1LQ8IVB5 337 aa11.19□□□□□ -0.62
SKA1-203ENST00000417656 PGAM4Q8N0Y7 254 aa11.19□□□□□ -0.62
SKA1-203ENST00000417656 RNF148Q8N7C7 305 aa11.19□□□□□ -0.62
SKA1-203ENST00000417656 RELL2Q8NC24 303 aaPredicted RBP11.19□□□□□ -0.62
SKA1-203ENST00000417656 CA5BP1Q8WTZ4 195 aa11.19□□□□□ -0.62
SKA1-203ENST00000417656 C3orf49Q96BT1 292 aa11.19□□□□□ -0.62
SKA1-203ENST00000417656 KCTD14Q9BQ13 255 aaPredicted RBP11.19□□□□□ -0.62
SKA1-203ENST00000417656 PRR14Q9BWN1 585 aa11.19□□□□□ -0.62
SKA1-203ENST00000417656 ADA2Q9NZK5 511 aa11.19□□□□□ -0.62
SKA1-203ENST00000417656 TMEM181Q9P2C4 612 aa11.19□□□□□ -0.62
SKA1-203ENST00000417656 MCTS1Q9ULC4 181 aaKnown RBP11.19□□□□□ -0.62
SKA1-203ENST00000417656 PTPN13Q12923 2485 aa11.19□□□□□ -0.62
SKA1-203ENST00000417656 SPTAN1Q13813 2472 aaKnown RBP11.19□□□□□ -0.62
SKA1-203ENST00000417656 A0A1B0GWA3 101 aa11.18□□□□□ -0.62
SKA1-203ENST00000417656 ZC3H12DA2A288 527 aaKnown RBP11.18□□□□□ -0.62
SKA1-203ENST00000417656 NKX2-6A6NCS4 301 aa11.18□□□□□ -0.62
SKA1-203ENST00000417656 CXCR6O00574 342 aa11.18□□□□□ -0.62
SKA1-203ENST00000417656 GSTA4O15217 222 aa11.18□□□□□ -0.62
SKA1-203ENST00000417656 SYNGR4O95473 234 aa11.18□□□□□ -0.62
SKA1-203ENST00000417656 LGI1O95970 557 aa11.18□□□□□ -0.62
SKA1-203ENST00000417656 FESP07332 822 aa11.18□□□□□ -0.62
SKA1-203ENST00000417656 FCGR2AP12318 317 aa11.18□□□□□ -0.62
SKA1-203ENST00000417656 TNFRSF1BP20333 461 aa11.18□□□□□ -0.62
SKA1-203ENST00000417656 BMP5P22003 454 aa11.18□□□□□ -0.62
SKA1-203ENST00000417656 AGFG1P52594 562 aaKnown RBP11.18□□□□□ -0.62
SKA1-203ENST00000417656 NPTX1Q15818 432 aa11.18□□□□□ -0.62
SKA1-203ENST00000417656 ZNF239Q16600 458 aaKnown RBP11.18□□□□□ -0.62
SKA1-203ENST00000417656 NRF1Q16656 503 aa11.18□□□□□ -0.62
SKA1-203ENST00000417656 CYBRD1Q53TN4 286 aa11.18□□□□□ -0.62
SKA1-203ENST00000417656 MAMDC2Q7Z304 686 aaPredicted RBP11.18□□□□□ -0.62
SKA1-203ENST00000417656 FAM156AQ8NDB6 213 aa11.18□□□□□ -0.62
SKA1-203ENST00000417656 OR52E4Q8NGH9 312 aa11.18□□□□□ -0.62
SKA1-203ENST00000417656 OR4D11Q8NGI4 311 aa11.18□□□□□ -0.62
SKA1-203ENST00000417656 OSTF1Q92882 214 aa11.18□□□□□ -0.62
SKA1-203ENST00000417656 INTS12Q96CB8 462 aaKnown RBP11.18□□□□□ -0.62
SKA1-203ENST00000417656 ARL5BQ96KC2 179 aa11.18□□□□□ -0.62
SKA1-203ENST00000417656 PRRG4Q9BZD6 226 aa11.18□□□□□ -0.62
SKA1-203ENST00000417656 UCK2Q9BZX2 261 aa11.18□□□□□ -0.62
SKA1-203ENST00000417656 ADAM19Q9H013 955 aa11.18□□□□□ -0.62
SKA1-203ENST00000417656 PAQR5Q9NXK6 330 aaPredicted RBP11.18□□□□□ -0.62
SKA1-203ENST00000417656 RPS6KB2Q9UBS0 482 aa11.18□□□□□ -0.62
SKA1-203ENST00000417656 USP9YO00507 2555 aaPredicted RBP11.18□□□□□ -0.62
SKA1-203ENST00000417656 COL12A1Q99715 3063 aa11.17□□□□□ -0.62
SKA1-203ENST00000417656 IGHV3-15A0A0B4J1V0 119 aa11.17□□□□□ -0.62
SKA1-203ENST00000417656 A0A1W2PNV4 684 aa11.17□□□□□ -0.62
SKA1-203ENST00000417656 TMEM229AB2RXF0 380 aa11.17□□□□□ -0.62
SKA1-203ENST00000417656 PRSS44E7EML9 344 aa11.17□□□□□ -0.62
SKA1-203ENST00000417656 DVL2O14641 736 aa11.17□□□□□ -0.62
SKA1-203ENST00000417656 ZNF208O43345 1280 aa11.17□□□□□ -0.62
SKA1-203ENST00000417656 TPST2O60704 377 aa11.17□□□□□ -0.62
SKA1-203ENST00000417656 RCBTB2O95199 551 aa11.17□□□□□ -0.62
SKA1-203ENST00000417656 C8BP07358 591 aa11.17□□□□□ -0.62
SKA1-203ENST00000417656 NCK1P16333 377 aa11.17□□□□□ -0.62
SKA1-203ENST00000417656 KLK2P20151 261 aa11.17□□□□□ -0.62
SKA1-203ENST00000417656 CXCR1P25024 350 aa11.17□□□□□ -0.62
SKA1-203ENST00000417656 CTSSP25774 331 aa11.17□□□□□ -0.62
SKA1-203ENST00000417656 GRNP28799 593 aaKnown RBP11.17□□□□□ -0.62
SKA1-203ENST00000417656 KDELR2P33947 212 aa11.17□□□□□ -0.62
SKA1-203ENST00000417656 DIO1P49895 249 aa11.17□□□□□ -0.62
SKA1-203ENST00000417656 CARD18P57730 90 aa11.17□□□□□ -0.62
SKA1-203ENST00000417656 SIRPAP78324 504 aa11.17□□□□□ -0.62
SKA1-203ENST00000417656 BNIP2Q12982 314 aa11.17□□□□□ -0.62
SKA1-203ENST00000417656 MYBPHQ13203 477 aa11.17□□□□□ -0.62
SKA1-203ENST00000417656 C16orf89Q6UX73 402 aa11.17□□□□□ -0.62
SKA1-203ENST00000417656 TRPM8Q7Z2W7 1104 aa11.17□□□□□ -0.62
SKA1-203ENST00000417656 ATG4DQ86TL0 474 aaPredicted RBP11.17□□□□□ -0.62
SKA1-203ENST00000417656 RANBP3LQ86VV4 465 aaPredicted RBP11.17□□□□□ -0.62
SKA1-203ENST00000417656 CARM1Q86X55 608 aa11.17□□□□□ -0.62
SKA1-203ENST00000417656 RBM45Q8IUH3 476 aaKnown RBP11.17□□□□□ -0.62
SKA1-203ENST00000417656 DEFB107AQ8IZN7 70 aa11.17□□□□□ -0.62
SKA1-203ENST00000417656 ZNF454Q8N9F8 522 aa11.17□□□□□ -0.62
SKA1-203ENST00000417656 OR6T1Q8NGN1 323 aa11.17□□□□□ -0.62
SKA1-203ENST00000417656 RASSF5Q8WWW0 418 aa11.17□□□□□ -0.62
SKA1-203ENST00000417656 ROBO4Q8WZ75 1007 aa11.17□□□□□ -0.62
SKA1-203ENST00000417656 PROX1Q92786 737 aa11.17□□□□□ -0.62
SKA1-203ENST00000417656 CPNE4Q96A23 557 aaPredicted RBP11.17□□□□□ -0.62
SKA1-203ENST00000417656 NSL1Q96IY1 281 aa11.17□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms