RNA–Protein interactions for RNA: ENST00000416417.5

USP4-204, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2 BASIC

Gene USP4, Length 1,536 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-204ENST00000416417 PNPT1Q8TCS8 783 aaKnown RBP10.2□□□□□ -0.78
USP4-204ENST00000416417 MIPOL1Q8TD10 442 aa10.2□□□□□ -0.78
USP4-204ENST00000416417 TMEM234Q8WY98 164 aa10.2□□□□□ -0.78
USP4-204ENST00000416417 ARL8AQ96BM9 186 aa10.2□□□□□ -0.78
USP4-204ENST00000416417 MUCL1Q96DR8 90 aa10.2□□□□□ -0.78
USP4-204ENST00000416417 SLC35A5Q9BS91 424 aa10.2□□□□□ -0.78
USP4-204ENST00000416417 INPP5KQ9BT40 448 aa10.2□□□□□ -0.78
USP4-204ENST00000416417 MARCOQ9UEW3 520 aaPredicted RBP10.2□□□□□ -0.78
USP4-204ENST00000416417 PRSS51A0A1B0GVH4 220 aa10.19□□□□□ -0.78
USP4-204ENST00000416417 CIB4A0PJX0 185 aa10.19□□□□□ -0.78
USP4-204ENST00000416417 OR5H1A6NKK0 313 aa10.19□□□□□ -0.78
USP4-204ENST00000416417 E7EQL1 145 aa10.19□□□□□ -0.78
USP4-204ENST00000416417 M0R1B8 84 aa10.19□□□□□ -0.78
USP4-204ENST00000416417 GPRIN2O60269 458 aa10.19□□□□□ -0.78
USP4-204ENST00000416417 GSNP06396 782 aa10.19□□□□□ -0.78
USP4-204ENST00000416417 IL12AP29459 219 aa10.19□□□□□ -0.78
USP4-204ENST00000416417 CDKN2CP42773 168 aa10.19□□□□□ -0.78
USP4-204ENST00000416417 SLC1A6P48664 564 aa10.19□□□□□ -0.78
USP4-204ENST00000416417 UFM1P61960 85 aa10.19□□□□□ -0.78
USP4-204ENST00000416417 CSNK2A1P68400 391 aaPredicted RBP10.19□□□□□ -0.78
USP4-204ENST00000416417 IRX1P78414 480 aaPredicted RBP10.19□□□□□ -0.78
USP4-204ENST00000416417 KCNJ10P78508 379 aa10.19□□□□□ -0.78
USP4-204ENST00000416417 CASP8Q14790 479 aa10.19□□□□□ -0.78
USP4-204ENST00000416417 FAM174BQ3ZCQ3 159 aa10.19□□□□□ -0.78
USP4-204ENST00000416417 TIMM23BQ5SRD1 257 aa10.19□□□□□ -0.78
USP4-204ENST00000416417 FBXW9Q5XUX1 488 aa10.19□□□□□ -0.78
USP4-204ENST00000416417 B3GLCTQ6Y288 498 aa10.19□□□□□ -0.78
USP4-204ENST00000416417 RNF130Q86XS8 419 aa10.19□□□□□ -0.78
USP4-204ENST00000416417 ARFGAP2Q8N6H7 521 aa10.19□□□□□ -0.78
USP4-204ENST00000416417 HS6ST2Q96MM7 605 aa10.19□□□□□ -0.78
USP4-204ENST00000416417 CENPHQ9H3R5 247 aa10.19□□□□□ -0.78
USP4-204ENST00000416417 ALG2Q9H553 416 aa10.19□□□□□ -0.78
USP4-204ENST00000416417 YAE1D1Q9NRH1 226 aa10.19□□□□□ -0.78
USP4-204ENST00000416417 CHRNA9Q9UGM1 479 aa10.19□□□□□ -0.78
USP4-204ENST00000416417 B3GALT5Q9Y2C3 310 aa10.19□□□□□ -0.78
USP4-204ENST00000416417 RAP2CQ9Y3L5 183 aa10.19□□□□□ -0.78
USP4-204ENST00000416417 HIVEP2P31629 2446 aa10.19□□□□□ -0.78
USP4-204ENST00000416417 IGHV4-30-2A0A087WSY4 118 aa10.18□□□□□ -0.78
USP4-204ENST00000416417 IGKV3D-15A0A087WSY6 115 aa10.18□□□□□ -0.78
USP4-204ENST00000416417 TMED7-TICAM2A0A0A6YYA0 188 aa10.18□□□□□ -0.78
USP4-204ENST00000416417 TMEM72A0PK05 275 aa10.18□□□□□ -0.78
USP4-204ENST00000416417 ZC3H12DA2A288 527 aaKnown RBP10.18□□□□□ -0.78
USP4-204ENST00000416417 HMGN4O00479 90 aa10.18□□□□□ -0.78
USP4-204ENST00000416417 RGS16O15492 202 aaPredicted RBP10.18□□□□□ -0.78
USP4-204ENST00000416417 TMCC2O75069 709 aa10.18□□□□□ -0.78
USP4-204ENST00000416417 PGM3O95394 542 aa10.18□□□□□ -0.78
USP4-204ENST00000416417 CHRM4P08173 479 aa10.18□□□□□ -0.78
USP4-204ENST00000416417 ALDOCP09972 364 aaKnown RBP10.18□□□□□ -0.78
USP4-204ENST00000416417 MYZAPP0CAP1 466 aa10.18□□□□□ -0.78
USP4-204ENST00000416417 IMPDH2P12268 514 aa10.18□□□□□ -0.78
USP4-204ENST00000416417 S100A3P33764 101 aa10.18□□□□□ -0.78
USP4-204ENST00000416417 APOBEC1P41238 236 aaKnown RBP10.18□□□□□ -0.78
USP4-204ENST00000416417 KHKP50053 298 aa10.18□□□□□ -0.78
USP4-204ENST00000416417 RPL14P50914 215 aaKnown RBP10.18□□□□□ -0.78
USP4-204ENST00000416417 SMU1Q2TAY7 513 aa10.18□□□□□ -0.78
USP4-204ENST00000416417 COX20Q5RI15 118 aa10.18□□□□□ -0.78
USP4-204ENST00000416417 ANXA8L1Q5VT79 327 aa10.18□□□□□ -0.78
USP4-204ENST00000416417 CASP12Q6UXS9 341 aa10.18□□□□□ -0.78
USP4-204ENST00000416417 HOMEZQ8IX15 550 aa10.18□□□□□ -0.78
USP4-204ENST00000416417 APH1AQ96BI3 265 aa10.18□□□□□ -0.78
USP4-204ENST00000416417 NEURL3Q96EH8 262 aa10.18□□□□□ -0.78
USP4-204ENST00000416417 PAIP2Q9BPZ3 127 aaKnown RBP10.18□□□□□ -0.78
USP4-204ENST00000416417 CACNG6Q9BXT2 260 aa10.18□□□□□ -0.78
USP4-204ENST00000416417 SAP130Q9H0E3 1048 aa10.18□□□□□ -0.78
USP4-204ENST00000416417 ST6GALNAC1Q9NSC7 600 aaPredicted RBP10.18□□□□□ -0.78
USP4-204ENST00000416417 EMC3Q9P0I2 261 aa10.18□□□□□ -0.78
USP4-204ENST00000416417 POU2F3Q9UKI9 436 aa10.18□□□□□ -0.78
USP4-204ENST00000416417 SLC35A3Q9Y2D2 325 aa10.18□□□□□ -0.78
USP4-204ENST00000416417 TMED7Q9Y3B3 224 aa10.18□□□□□ -0.78
USP4-204ENST00000416417 SLC25A15Q9Y619 301 aa10.18□□□□□ -0.78
USP4-204ENST00000416417 GOLGA8QA0A0J9YX86 632 aa10.17□□□□□ -0.78
USP4-204ENST00000416417 GOLGA8OA6NCC3 632 aa10.17□□□□□ -0.78
USP4-204ENST00000416417 GOLGA8NF8WBI6 632 aa10.17□□□□□ -0.78
USP4-204ENST00000416417 PMS2P2O95744 297 aa10.17□□□□□ -0.78
USP4-204ENST00000416417 THBS1P07996 1170 aa10.17□□□□□ -0.78
USP4-204ENST00000416417 ITGA5P08648 1049 aa10.17□□□□□ -0.78
USP4-204ENST00000416417 LBPP18428 481 aa10.17□□□□□ -0.78
USP4-204ENST00000416417 SLC25A3Q00325 362 aa10.17□□□□□ -0.78
USP4-204ENST00000416417 SLC22A25Q6T423 547 aa10.17□□□□□ -0.78
USP4-204ENST00000416417 CXXC5Q7LFL8 322 aaKnown RBP10.17□□□□□ -0.78
USP4-204ENST00000416417 GRINAQ7Z429 371 aa10.17□□□□□ -0.78
USP4-204ENST00000416417 DTX2Q86UW9 622 aa10.17□□□□□ -0.78
USP4-204ENST00000416417 SLC25A43Q8WUT9 341 aaPredicted RBP10.17□□□□□ -0.78
USP4-204ENST00000416417 TESCQ96BS2 214 aa10.17□□□□□ -0.78
USP4-204ENST00000416417 ZHX1-C8orf76Q96EF9 292 aa10.17□□□□□ -0.78
USP4-204ENST00000416417 TMEM109Q9BVC6 243 aa10.17□□□□□ -0.78
USP4-204ENST00000416417 SLC38A1Q9H2H9 487 aa10.17□□□□□ -0.78
USP4-204ENST00000416417 KCNK9Q9NPC2 374 aa10.17□□□□□ -0.78
USP4-204ENST00000416417 SLC7A10Q9NS82 523 aa10.17□□□□□ -0.78
USP4-204ENST00000416417 OSGIN1Q9UJX0 560 aa10.17□□□□□ -0.78
USP4-204ENST00000416417 CR1P17927 2039 aa10.17□□□□□ -0.78
USP4-204ENST00000416417 CCDC154A6NI56 674 aa10.17□□□□□ -0.78
USP4-204ENST00000416417 E9PBE3 544 aa10.17□□□□□ -0.78
USP4-204ENST00000416417 SDHDO14521 159 aa10.17□□□□□ -0.78
USP4-204ENST00000416417 MRPL33O75394 65 aaKnown RBP10.17□□□□□ -0.78
USP4-204ENST00000416417 AGR2O95994 175 aa10.17□□□□□ -0.78
USP4-204ENST00000416417 TP53P04637 393 aaPredicted RBP10.17□□□□□ -0.78
USP4-204ENST00000416417 DHRS4L1P0CG22 281 aa10.17□□□□□ -0.78
USP4-204ENST00000416417 CDH2P19022 906 aaPredicted RBP10.17□□□□□ -0.78
USP4-204ENST00000416417 CD40P25942 277 aa10.17□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms