RNA–Protein interactions for RNA: ENST00000415188.1

USP4-203, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3 BASIC

Gene USP4, Length 1,454 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-203ENST00000415188 JMJD7P0C870 316 aa13.62□□□□□ -0.23
USP4-203ENST00000415188 CD53P19397 219 aa13.62□□□□□ -0.23
USP4-203ENST00000415188 PTBP1P26599 531 aaKnown RBP eCLIP13.62□□□□□ -0.23
USP4-203ENST00000415188 EIF2B2P49770 351 aaKnown RBP13.62□□□□□ -0.23
USP4-203ENST00000415188 IGLV3-21P80748 117 aaPredicted RBP13.62□□□□□ -0.23
USP4-203ENST00000415188 HHEXQ03014 270 aa13.62□□□□□ -0.23
USP4-203ENST00000415188 HNRNPA0Q13151 305 aaKnown RBP13.62□□□□□ -0.23
USP4-203ENST00000415188 EIF3IQ13347 325 aaKnown RBP13.62□□□□□ -0.23
USP4-203ENST00000415188 PRTGQ2VWP7 1150 aa13.62□□□□□ -0.23
USP4-203ENST00000415188 CRTC2Q53ET0 693 aaPredicted RBP13.62□□□□□ -0.23
USP4-203ENST00000415188 PHF19Q5T6S3 580 aa13.62□□□□□ -0.23
USP4-203ENST00000415188 NIPAL3Q6P499 406 aa13.62□□□□□ -0.23
USP4-203ENST00000415188 XKRXQ6PP77 449 aa13.62□□□□□ -0.23
USP4-203ENST00000415188 MEPCEQ7L2J0 689 aaKnown RBP13.62□□□□□ -0.23
USP4-203ENST00000415188 CPOQ8IVL8 374 aa13.62□□□□□ -0.23
USP4-203ENST00000415188 SLITRK4Q8IW52 837 aa13.62□□□□□ -0.23
USP4-203ENST00000415188 GDPD1Q8N9F7 314 aa13.62□□□□□ -0.23
USP4-203ENST00000415188 C19orf47Q8N9M1 422 aaKnown RBP13.62□□□□□ -0.23
USP4-203ENST00000415188 SIMC1Q8NDZ2 872 aa13.62□□□□□ -0.23
USP4-203ENST00000415188 OR5T3Q8NGG3 340 aa13.62□□□□□ -0.23
USP4-203ENST00000415188 RNF217Q8TC41 542 aa13.62□□□□□ -0.23
USP4-203ENST00000415188 HTRA1Q92743 480 aa13.62□□□□□ -0.23
USP4-203ENST00000415188 LRFN5Q96NI6 719 aa13.62□□□□□ -0.23
USP4-203ENST00000415188 NUDT22Q9BRQ3 303 aa13.62□□□□□ -0.23
USP4-203ENST00000415188 SRRQ9GZT4 340 aa13.62□□□□□ -0.23
USP4-203ENST00000415188 ST6GALNAC1Q9NSC7 600 aaPredicted RBP13.62□□□□□ -0.23
USP4-203ENST00000415188 PLEKHB1Q9UF11 243 aaPredicted RBP13.62□□□□□ -0.23
USP4-203ENST00000415188 KCNE5Q9UJ90 142 aa13.62□□□□□ -0.23
USP4-203ENST00000415188 KALRNO60229 2985 aa13.62□□□□□ -0.23
USP4-203ENST00000415188 SLC22A31A6NKX4 558 aa13.61□□□□□ -0.23
USP4-203ENST00000415188 PEX12O00623 359 aa13.61□□□□□ -0.23
USP4-203ENST00000415188 KCNK2O95069 426 aa13.61□□□□□ -0.23
USP4-203ENST00000415188 NTN1O95631 604 aa13.61□□□□□ -0.23
USP4-203ENST00000415188 CH25HO95992 272 aa13.61□□□□□ -0.23
USP4-203ENST00000415188 CT62P0C5K7 136 aa13.61□□□□□ -0.23
USP4-203ENST00000415188 ZGLP1P0C6A0 271 aa13.61□□□□□ -0.23
USP4-203ENST00000415188 PAICSP22234 425 aaKnown RBP13.61□□□□□ -0.23
USP4-203ENST00000415188 SDC2P34741 201 aa13.61□□□□□ -0.23
USP4-203ENST00000415188 ATP6V1E1P36543 226 aa13.61□□□□□ -0.23
USP4-203ENST00000415188 RNF144AP50876 292 aaPredicted RBP13.61□□□□□ -0.23
USP4-203ENST00000415188 PPP3R1P63098 170 aa13.61□□□□□ -0.23
USP4-203ENST00000415188 EXOSC7Q15024 291 aaKnown RBP13.61□□□□□ -0.23
USP4-203ENST00000415188 ZNF322Q6U7Q0 402 aaPredicted RBP13.61□□□□□ -0.23
USP4-203ENST00000415188 CCBE1Q6UXH8 406 aaPredicted RBP13.61□□□□□ -0.23
USP4-203ENST00000415188 ZNF550Q7Z398 422 aa13.61□□□□□ -0.23
USP4-203ENST00000415188 ZNF438Q7Z4V0 828 aa13.61□□□□□ -0.23
USP4-203ENST00000415188 MCATQ8IVS2 390 aaKnown RBP13.61□□□□□ -0.23
USP4-203ENST00000415188 CMIPQ8IY22 773 aa13.61□□□□□ -0.23
USP4-203ENST00000415188 ZNF595Q8IYB9 648 aa13.61□□□□□ -0.23
USP4-203ENST00000415188 OR8H2Q8N162 312 aa13.61□□□□□ -0.23
USP4-203ENST00000415188 OR52R1Q8NGF1 315 aa13.61□□□□□ -0.23
USP4-203ENST00000415188 SLC2A12Q8TD20 617 aa13.61□□□□□ -0.23
USP4-203ENST00000415188 OIT3Q8WWZ8 545 aa13.61□□□□□ -0.23
USP4-203ENST00000415188 ZNF649Q9BS31 505 aa13.61□□□□□ -0.23
USP4-203ENST00000415188 FOLH1BQ9HBA9 442 aa13.61□□□□□ -0.23
USP4-203ENST00000415188 CMC2Q9NRP2 79 aa13.61□□□□□ -0.23
USP4-203ENST00000415188 ATMQ13315 3056 aa13.61□□□□□ -0.23
USP4-203ENST00000415188 A0A0B4J2E0 115 aa13.61□□□□□ -0.23
USP4-203ENST00000415188 A0A1B0GX12 115 aa13.61□□□□□ -0.23
USP4-203ENST00000415188 GXYLT2A0PJZ3 443 aa13.61□□□□□ -0.23
USP4-203ENST00000415188 SGK494L7N484 410 aa13.61□□□□□ -0.23
USP4-203ENST00000415188 RDH16O75452 317 aa13.61□□□□□ -0.23
USP4-203ENST00000415188 APOL3O95236 402 aa13.61□□□□□ -0.23
USP4-203ENST00000415188 PRG2P13727 222 aa13.61□□□□□ -0.23
USP4-203ENST00000415188 ST6GAL1P15907 406 aa13.61□□□□□ -0.23
USP4-203ENST00000415188 MAKP20794 623 aa13.61□□□□□ -0.23
USP4-203ENST00000415188 TBXA2RP21731 343 aa13.61□□□□□ -0.23
USP4-203ENST00000415188 FABP5Q01469 135 aa13.61□□□□□ -0.23
USP4-203ENST00000415188 SRSF6Q13247 344 aaKnown RBP13.61□□□□□ -0.23
USP4-203ENST00000415188 BIKQ13323 160 aa13.61□□□□□ -0.23
USP4-203ENST00000415188 TGIF1Q15583 401 aa13.61□□□□□ -0.23
USP4-203ENST00000415188 TRAM1Q15629 374 aa13.61□□□□□ -0.23
USP4-203ENST00000415188 GLYR1Q49A26 553 aaPredicted RBP13.61□□□□□ -0.23
USP4-203ENST00000415188 NKAIN2Q5VXU1 208 aa13.61□□□□□ -0.23
USP4-203ENST00000415188 DESI1Q6ICB0 168 aa13.61□□□□□ -0.23
USP4-203ENST00000415188 FIGNL1Q6PIW4 674 aa13.61□□□□□ -0.23
USP4-203ENST00000415188 SMARCD3Q6STE5 483 aa13.61□□□□□ -0.23
USP4-203ENST00000415188 METAP1DQ6UB28 335 aaPredicted RBP13.61□□□□□ -0.23
USP4-203ENST00000415188 WDR88Q6ZMY6 472 aa13.61□□□□□ -0.23
USP4-203ENST00000415188 ZNF574Q6ZN55 896 aaPredicted RBP13.61□□□□□ -0.23
USP4-203ENST00000415188 GDPD3Q7L5L3 318 aa13.61□□□□□ -0.23
USP4-203ENST00000415188 AKAP14Q86UN6 197 aa13.61□□□□□ -0.23
USP4-203ENST00000415188 LHFPL3Q86UP9 236 aa13.61□□□□□ -0.23
USP4-203ENST00000415188 LAX1Q8IWV1 398 aa13.61□□□□□ -0.23
USP4-203ENST00000415188 ACBD7Q8N6N7 88 aa13.61□□□□□ -0.23
USP4-203ENST00000415188 ARIH2OSQ8N7S6 290 aa13.61□□□□□ -0.23
USP4-203ENST00000415188 OR4F15Q8NGB8 312 aa13.61□□□□□ -0.23
USP4-203ENST00000415188 HPS1Q92902 700 aa13.61□□□□□ -0.23
USP4-203ENST00000415188 BPIFA2Q96DR5 249 aa13.61□□□□□ -0.23
USP4-203ENST00000415188 SECISBP2Q96T21 854 aaKnown RBP13.61□□□□□ -0.23
USP4-203ENST00000415188 PELOQ9BRX2 385 aaKnown RBP13.61□□□□□ -0.23
USP4-203ENST00000415188 KATNB1Q9BVA0 655 aa13.61□□□□□ -0.23
USP4-203ENST00000415188 AHCTF1Q8WYP5 2266 aa13.6□□□□□ -0.23
USP4-203ENST00000415188 LILRA5A6NI73 299 aa13.6□□□□□ -0.23
USP4-203ENST00000415188 RIIAD1A6NNX1 92 aa13.6□□□□□ -0.23
USP4-203ENST00000415188 K7ENP7 123 aa13.6□□□□□ -0.23
USP4-203ENST00000415188 ERVH48-1M5A8F1 160 aa13.6□□□□□ -0.23
USP4-203ENST00000415188 SOCS6O14544 535 aa13.6□□□□□ -0.23
USP4-203ENST00000415188 SEC14L5O43304 696 aa13.6□□□□□ -0.23
USP4-203ENST00000415188 CTNSO60931 367 aa13.6□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms