RNA–Protein interactions for RNA: ENST00000413601.3

LIMS4-201, Transcript of LIM zinc finger domain containing 4, humanhuman

TSL 1 (best) BASIC

Gene LIMS4, Length 1,215 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS4-201ENST00000413601 FBXW10Q5XX13 1052 aa13.2□□□□□ -0.3
LIMS4-201ENST00000413601 CGB2Q6NT52 195 aa13.2□□□□□ -0.3
LIMS4-201ENST00000413601 TMPPEQ6ZT21 453 aa13.2□□□□□ -0.3
LIMS4-201ENST00000413601 NUFIP2Q7Z417 695 aaKnown RBP13.2□□□□□ -0.3
LIMS4-201ENST00000413601 ZNF440Q8IYI8 595 aa13.2□□□□□ -0.3
LIMS4-201ENST00000413601 SLC43A2Q8N370 569 aa13.2□□□□□ -0.3
LIMS4-201ENST00000413601 NFKBIDQ8NI38 313 aa13.2□□□□□ -0.3
LIMS4-201ENST00000413601 BBS10Q8TAM1 723 aa13.2□□□□□ -0.3
LIMS4-201ENST00000413601 KLHL4Q9C0H6 718 aa13.2□□□□□ -0.3
LIMS4-201ENST00000413601 CACYBPQ9HB71 228 aaKnown RBP13.2□□□□□ -0.3
LIMS4-201ENST00000413601 BCL2L10Q9HD36 194 aa13.2□□□□□ -0.3
LIMS4-201ENST00000413601 KLHL28Q9NXS3 571 aa13.2□□□□□ -0.3
LIMS4-201ENST00000413601 KLHL13Q9P2N7 655 aa13.2□□□□□ -0.3
LIMS4-201ENST00000413601 OSGIN1Q9UJX0 560 aa13.2□□□□□ -0.3
LIMS4-201ENST00000413601 IFT52Q9Y366 437 aa13.2□□□□□ -0.3
LIMS4-201ENST00000413601 NDUFAF1Q9Y375 327 aa13.2□□□□□ -0.3
LIMS4-201ENST00000413601 TMED7Q9Y3B3 224 aa13.2□□□□□ -0.3
LIMS4-201ENST00000413601 TESMINQ9Y4I5 508 aa13.2□□□□□ -0.3
LIMS4-201ENST00000413601 GMEB1Q9Y692 573 aa13.2□□□□□ -0.3
LIMS4-201ENST00000413601 POLQO75417 2590 aa13.2□□□□□ -0.3
LIMS4-201ENST00000413601 CSMD1Q96PZ7 3565 aa13.19□□□□□ -0.3
LIMS4-201ENST00000413601 TMEM72A0PK05 275 aa13.19□□□□□ -0.3
LIMS4-201ENST00000413601 EVPLLA8MZ36 301 aa13.19□□□□□ -0.3
LIMS4-201ENST00000413601 CASKO14936 926 aa13.19□□□□□ -0.3
LIMS4-201ENST00000413601 ANGPT2O15123 496 aa13.19□□□□□ -0.3
LIMS4-201ENST00000413601 PGM3O95394 542 aa13.19□□□□□ -0.3
LIMS4-201ENST00000413601 FESP07332 822 aa13.19□□□□□ -0.3
LIMS4-201ENST00000413601 YES1P07947 543 aa13.19□□□□□ -0.3
LIMS4-201ENST00000413601 PRG2P13727 222 aa13.19□□□□□ -0.3
LIMS4-201ENST00000413601 GPX2P18283 190 aa13.19□□□□□ -0.3
LIMS4-201ENST00000413601 SLC1A3P43003 542 aa13.19□□□□□ -0.3
LIMS4-201ENST00000413601 CSNK2A1P68400 391 aaPredicted RBP13.19□□□□□ -0.3
LIMS4-201ENST00000413601 RASGEF1BQ0VAM2 473 aa13.19□□□□□ -0.3
LIMS4-201ENST00000413601 RUNDC3AQ59EK9 446 aa13.19□□□□□ -0.3
LIMS4-201ENST00000413601 ANKRD34AQ69YU3 496 aa13.19□□□□□ -0.3
LIMS4-201ENST00000413601 ZNF550Q7Z398 422 aa13.19□□□□□ -0.3
LIMS4-201ENST00000413601 STK32CQ86UX6 486 aa13.19□□□□□ -0.3
LIMS4-201ENST00000413601 RETREG3Q86VR2 466 aa13.19□□□□□ -0.3
LIMS4-201ENST00000413601 CDC20BQ86Y33 519 aa13.19□□□□□ -0.3
LIMS4-201ENST00000413601 CADM2Q8N3J6 435 aa13.19□□□□□ -0.3
LIMS4-201ENST00000413601 ZNF775Q96BV0 537 aaPredicted RBP13.19□□□□□ -0.3
LIMS4-201ENST00000413601 PSD2Q9BQI7 771 aa13.19□□□□□ -0.3
LIMS4-201ENST00000413601 CPPED1Q9BRF8 314 aaPredicted RBP13.19□□□□□ -0.3
LIMS4-201ENST00000413601 MED18Q9BUE0 208 aa13.19□□□□□ -0.3
LIMS4-201ENST00000413601 SPATA9Q9BWV2 254 aa13.19□□□□□ -0.3
LIMS4-201ENST00000413601 ADAM19Q9H013 955 aa13.19□□□□□ -0.3
LIMS4-201ENST00000413601 LIME1Q9H400 295 aa13.19□□□□□ -0.3
LIMS4-201ENST00000413601 MED4Q9NPJ6 270 aa13.19□□□□□ -0.3
LIMS4-201ENST00000413601 ING1Q9UK53 422 aaPredicted RBP13.19□□□□□ -0.3
LIMS4-201ENST00000413601 CORO2BQ9UQ03 480 aa13.19□□□□□ -0.3
LIMS4-201ENST00000413601 HRNRQ86YZ3 2850 aaPredicted RBP13.19□□□□□ -0.3
LIMS4-201ENST00000413601 CYTIPO60759 359 aa13.18□□□□□ -0.3
LIMS4-201ENST00000413601 PMS2P2O95744 297 aa13.18□□□□□ -0.3
LIMS4-201ENST00000413601 FKBP2P26885 142 aaKnown RBP13.18□□□□□ -0.3
LIMS4-201ENST00000413601 CLK1P49759 484 aaKnown RBP13.18□□□□□ -0.3
LIMS4-201ENST00000413601 ARFIP2P53365 341 aa13.18□□□□□ -0.3
LIMS4-201ENST00000413601 CDK6Q00534 326 aa13.18□□□□□ -0.3
LIMS4-201ENST00000413601 POU4F3Q15319 338 aa13.18□□□□□ -0.3
LIMS4-201ENST00000413601 ZSWIM7Q19AV6 140 aa13.18□□□□□ -0.3
LIMS4-201ENST00000413601 REEP3Q6NUK4 255 aa13.18□□□□□ -0.3
LIMS4-201ENST00000413601 STAC2Q6ZMT1 411 aa13.18□□□□□ -0.3
LIMS4-201ENST00000413601 BEND4Q6ZU67 534 aa13.18□□□□□ -0.3
LIMS4-201ENST00000413601 C22orf34Q6ZV56 151 aa13.18□□□□□ -0.3
LIMS4-201ENST00000413601 DHDDSQ86SQ9 333 aa13.18□□□□□ -0.3
LIMS4-201ENST00000413601 SERPINA11Q86U17 422 aa13.18□□□□□ -0.3
LIMS4-201ENST00000413601 MTDHQ86UE4 582 aaKnown RBP13.18□□□□□ -0.3
LIMS4-201ENST00000413601 DPP10Q8N608 796 aa13.18□□□□□ -0.3
LIMS4-201ENST00000413601 TSPEARQ8WU66 669 aa13.18□□□□□ -0.3
LIMS4-201ENST00000413601 ZC3HAV1LQ96H79 300 aaKnown RBP13.18□□□□□ -0.3
LIMS4-201ENST00000413601 ZNF300Q96RE9 604 aaPredicted RBP13.18□□□□□ -0.3
LIMS4-201ENST00000413601 RSPO3Q9BXY4 272 aaPredicted RBP13.18□□□□□ -0.3
LIMS4-201ENST00000413601 ARMC7Q9H6L4 198 aa13.18□□□□□ -0.3
LIMS4-201ENST00000413601 BCO1Q9HAY6 547 aa13.18□□□□□ -0.3
LIMS4-201ENST00000413601 GP6Q9HCN6 339 aa13.18□□□□□ -0.3
LIMS4-201ENST00000413601 KLHL9Q9P2J3 617 aa13.18□□□□□ -0.3
LIMS4-201ENST00000413601 HDGFL3Q9Y3E1 203 aa13.18□□□□□ -0.3
LIMS4-201ENST00000413601 ZC3H12DA2A288 527 aaKnown RBP13.17□□□□□ -0.3
LIMS4-201ENST00000413601 ZNF208O43345 1280 aa13.17□□□□□ -0.3
LIMS4-201ENST00000413601 FRS3O43559 492 aa13.17□□□□□ -0.3
LIMS4-201ENST00000413601 ETS2P15036 469 aa13.17□□□□□ -0.3
LIMS4-201ENST00000413601 DNAJA1P31689 397 aaKnown RBP13.17□□□□□ -0.3
LIMS4-201ENST00000413601 OR2B6P58173 313 aa13.17□□□□□ -0.3
LIMS4-201ENST00000413601 COPZ1P61923 177 aa13.17□□□□□ -0.3
LIMS4-201ENST00000413601 HOXC5Q00444 222 aa13.17□□□□□ -0.3
LIMS4-201ENST00000413601 NFYCQ13952 458 aa13.17□□□□□ -0.3
LIMS4-201ENST00000413601 SCARB2Q14108 478 aa13.17□□□□□ -0.3
LIMS4-201ENST00000413601 SELPLGQ14242 412 aa13.17□□□□□ -0.3
LIMS4-201ENST00000413601 ADRM1Q16186 407 aa13.17□□□□□ -0.3
LIMS4-201ENST00000413601 WBP2NLQ6ICG8 309 aa13.17□□□□□ -0.3
LIMS4-201ENST00000413601 TFAP2EQ6VUC0 442 aa13.17□□□□□ -0.3
LIMS4-201ENST00000413601 DDIT4LQ96D03 193 aa13.17□□□□□ -0.3
LIMS4-201ENST00000413601 ZHX1-C8orf76Q96EF9 292 aa13.17□□□□□ -0.3
LIMS4-201ENST00000413601 ANKRD27Q96NW4 1050 aa13.17□□□□□ -0.3
LIMS4-201ENST00000413601 CGREF1Q99674 301 aa13.17□□□□□ -0.3
LIMS4-201ENST00000413601 TACO1Q9BSH4 297 aaKnown RBP13.17□□□□□ -0.3
LIMS4-201ENST00000413601 CCDC134Q9H6E4 229 aa13.17□□□□□ -0.3
LIMS4-201ENST00000413601 TMEM38AQ9H6F2 299 aa13.17□□□□□ -0.3
LIMS4-201ENST00000413601 C6orf203Q9P0P8 240 aaPredicted RBP13.17□□□□□ -0.3
LIMS4-201ENST00000413601 TMEM181Q9P2C4 612 aa13.17□□□□□ -0.3
LIMS4-201ENST00000413601 TRAPPC4Q9Y296 219 aa13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 55.8 ms