RNA–Protein interactions for RNA: ENST00000409809.5

COL6A3-206, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-206ENST00000409809 GPX8Q8TED1 209 aa12.11□□□□□ -0.47
COL6A3-206ENST00000409809 ZDHHC11Q9H8X9 412 aa12.11□□□□□ -0.47
COL6A3-206ENST00000409809 SIDT1Q9NXL6 827 aaKnown RBP12.11□□□□□ -0.47
COL6A3-206ENST00000409809 FAM186AA6NE01 2351 aa12.11□□□□□ -0.47
COL6A3-206ENST00000409809 KIF26BQ2KJY2 2108 aa12.11□□□□□ -0.47
COL6A3-206ENST00000409809 TMEM129A0AVI4 362 aa12.11□□□□□ -0.47
COL6A3-206ENST00000409809 AGXTP21549 392 aa12.11□□□□□ -0.47
COL6A3-206ENST00000409809 LRFN4Q6PJG9 635 aa12.11□□□□□ -0.47
COL6A3-206ENST00000409809 GPR88Q9GZN0 384 aa12.11□□□□□ -0.47
COL6A3-206ENST00000409809 LOC102725191A0A1B0GVB3 256 aa12.11□□□□□ -0.47
COL6A3-206ENST00000409809 GP2P55259 537 aaKnown RBP12.11□□□□□ -0.47
COL6A3-206ENST00000409809 RGNQ15493 299 aa12.11□□□□□ -0.47
COL6A3-206ENST00000409809 PRSS35Q8N3Z0 413 aa12.11□□□□□ -0.47
COL6A3-206ENST00000409809 CDS1Q92903 461 aa12.11□□□□□ -0.47
COL6A3-206ENST00000409809 PITX2Q99697 317 aa12.11□□□□□ -0.47
COL6A3-206ENST00000409809 OR10A5Q9H207 317 aa12.11□□□□□ -0.47
COL6A3-206ENST00000409809 OR10A2Q9H208 303 aa12.11□□□□□ -0.47
COL6A3-206ENST00000409809 MRPL15Q9P015 296 aaKnown RBP12.11□□□□□ -0.47
COL6A3-206ENST00000409809 OR6C68A6NDL8 312 aa12.11□□□□□ -0.47
COL6A3-206ENST00000409809 OTOL1A6NHN0 477 aaPredicted RBP12.11□□□□□ -0.47
COL6A3-206ENST00000409809 G3V2L1 256 aa12.11□□□□□ -0.47
COL6A3-206ENST00000409809 PSMD8P48556 350 aa12.11□□□□□ -0.47
COL6A3-206ENST00000409809 LRIT3Q3SXY7 679 aa12.11□□□□□ -0.47
COL6A3-206ENST00000409809 ZNF596Q8TC21 504 aa12.11□□□□□ -0.47
COL6A3-206ENST00000409809 DAZLQ92904 295 aaKnown RBP12.11□□□□□ -0.47
COL6A3-206ENST00000409809 SORT1Q99523 831 aa12.11□□□□□ -0.47
COL6A3-206ENST00000409809 TMEM43Q9BTV4 400 aa12.11□□□□□ -0.47
COL6A3-206ENST00000409809 SIGLEC6O43699 453 aa12.11□□□□□ -0.47
COL6A3-206ENST00000409809 CATR1Q13166 79 aa12.11□□□□□ -0.47
COL6A3-206ENST00000409809 GRB7Q14451 532 aa12.11□□□□□ -0.47
COL6A3-206ENST00000409809 LTB4RQ15722 352 aa12.11□□□□□ -0.47
COL6A3-206ENST00000409809 ADAM5Q6NVV9 412 aa12.11□□□□□ -0.47
COL6A3-206ENST00000409809 OR4K15Q8NH41 348 aa12.11□□□□□ -0.47
COL6A3-206ENST00000409809 NKX3-1Q99801 234 aaPredicted RBP12.11□□□□□ -0.47
COL6A3-206ENST00000409809 PTPN18Q99952 460 aa12.11□□□□□ -0.47
COL6A3-206ENST00000409809 SLC12A9Q9BXP2 914 aa12.11□□□□□ -0.47
COL6A3-206ENST00000409809 RGS13O14921 159 aa12.11□□□□□ -0.47
COL6A3-206ENST00000409809 PRAMEF11O60813 436 aa12.11□□□□□ -0.47
COL6A3-206ENST00000409809 CLDN20P56880 219 aa12.11□□□□□ -0.47
COL6A3-206ENST00000409809 TARBP2Q15633 366 aaKnown RBP12.11□□□□□ -0.47
COL6A3-206ENST00000409809 TCTEX1D1Q8N7M0 179 aa12.11□□□□□ -0.47
COL6A3-206ENST00000409809 UTP4Q969X6 686 aaKnown RBP12.11□□□□□ -0.47
COL6A3-206ENST00000409809 NUDT9Q9BW91 350 aa12.11□□□□□ -0.47
COL6A3-206ENST00000409809 METTL7AQ9H8H3 244 aa12.11□□□□□ -0.47
COL6A3-206ENST00000409809 ZNF395Q9H8N7 513 aaPredicted RBP12.11□□□□□ -0.47
COL6A3-206ENST00000409809 KCMF1Q9P0J7 381 aa12.11□□□□□ -0.47
COL6A3-206ENST00000409809 ITGB2P05107 769 aa12.11□□□□□ -0.47
COL6A3-206ENST00000409809 AANATQ16613 207 aa12.11□□□□□ -0.47
COL6A3-206ENST00000409809 TMEM225Q6GV28 225 aa12.11□□□□□ -0.47
COL6A3-206ENST00000409809 ZNF322Q6U7Q0 402 aaPredicted RBP12.11□□□□□ -0.47
COL6A3-206ENST00000409809 FAM217AQ8IXS0 508 aa12.11□□□□□ -0.47
COL6A3-206ENST00000409809 ARL6IP6Q8N6S5 226 aa12.11□□□□□ -0.47
COL6A3-206ENST00000409809 CXorf58Q96LI9 332 aa12.11□□□□□ -0.47
COL6A3-206ENST00000409809 PLEKHA2Q9HB19 425 aa12.11□□□□□ -0.47
COL6A3-206ENST00000409809 TAC3Q9UHF0 121 aa12.11□□□□□ -0.47
COL6A3-206ENST00000409809 MOKQ9UQ07 419 aa12.11□□□□□ -0.47
COL6A3-206ENST00000409809 CALCBP10092 127 aa12.1□□□□□ -0.47
COL6A3-206ENST00000409809 NAGAP17050 411 aa12.1□□□□□ -0.47
COL6A3-206ENST00000409809 GPR4P46093 362 aa12.1□□□□□ -0.47
COL6A3-206ENST00000409809 ADARB1P78563 741 aaKnown RBP12.1□□□□□ -0.47
COL6A3-206ENST00000409809 ZNF648Q5T619 568 aaPredicted RBP12.1□□□□□ -0.47
COL6A3-206ENST00000409809 CPOQ8IVL8 374 aa12.1□□□□□ -0.47
COL6A3-206ENST00000409809 OR6K2Q8NGY2 324 aa12.1□□□□□ -0.47
COL6A3-206ENST00000409809 BET1LQ9NYM9 111 aa12.1□□□□□ -0.47
COL6A3-206ENST00000409809 ANHXE9PGG2 379 aa12.1□□□□□ -0.47
COL6A3-206ENST00000409809 CBLP22681 906 aa12.1□□□□□ -0.47
COL6A3-206ENST00000409809 BDH1Q02338 343 aa12.1□□□□□ -0.47
COL6A3-206ENST00000409809 RING1Q06587 406 aa12.1□□□□□ -0.47
COL6A3-206ENST00000409809 OR10Q1Q8NGQ4 319 aa12.1□□□□□ -0.47
COL6A3-206ENST00000409809 EHFQ9NZC4 300 aa12.1□□□□□ -0.47
COL6A3-206ENST00000409809 OSGIN1Q9UJX0 560 aa12.1□□□□□ -0.47
COL6A3-206ENST00000409809 DDTLA6NHG4 134 aaPredicted RBP12.1□□□□□ -0.47
COL6A3-206ENST00000409809 LAG3P18627 525 aa12.1□□□□□ -0.47
COL6A3-206ENST00000409809 SDHBP21912 280 aa12.1□□□□□ -0.47
COL6A3-206ENST00000409809 CDKN1CP49918 316 aaPredicted RBP12.1□□□□□ -0.47
COL6A3-206ENST00000409809 PMPCAQ10713 525 aa12.1□□□□□ -0.47
COL6A3-206ENST00000409809 ILKQ13418 452 aa12.1□□□□□ -0.47
COL6A3-206ENST00000409809 TMPPEQ6ZT21 453 aa12.1□□□□□ -0.47
COL6A3-206ENST00000409809 CLEC20AQ6ZU45 233 aa12.1□□□□□ -0.47
COL6A3-206ENST00000409809 MUTYHQ9UIF7 546 aa12.1□□□□□ -0.47
COL6A3-206ENST00000409809 PEAK1Q9H792 1746 aa12.1□□□□□ -0.47
COL6A3-206ENST00000409809 UNCXA6NJT0 531 aa12.1□□□□□ -0.47
COL6A3-206ENST00000409809 LY86O95711 162 aa12.1□□□□□ -0.47
COL6A3-206ENST00000409809 ZNF154Q13106 437 aa12.1□□□□□ -0.47
COL6A3-206ENST00000409809 RNF24Q9Y225 148 aa12.1□□□□□ -0.47
COL6A3-206ENST00000409809 LGALS8O00214 317 aa12.1□□□□□ -0.47
COL6A3-206ENST00000409809 OPRD1P41143 372 aa12.1□□□□□ -0.47
COL6A3-206ENST00000409809 NPBWR1P48145 328 aa12.1□□□□□ -0.47
COL6A3-206ENST00000409809 HSF1Q00613 529 aa12.1□□□□□ -0.47
COL6A3-206ENST00000409809 SLC10A1Q14973 349 aa12.1□□□□□ -0.47
COL6A3-206ENST00000409809 ADGRE4PQ86SQ3 457 aa12.1□□□□□ -0.47
COL6A3-206ENST00000409809 NUP98P52948 1817 aa12.1□□□□□ -0.47
COL6A3-206ENST00000409809 YJEFN3A6XGL0 299 aa12.1□□□□□ -0.47
COL6A3-206ENST00000409809 PLSCR1O15162 318 aa12.1□□□□□ -0.47
COL6A3-206ENST00000409809 AADACP22760 399 aa12.1□□□□□ -0.47
COL6A3-206ENST00000409809 MAP2K5Q13163 448 aa12.1□□□□□ -0.47
COL6A3-206ENST00000409809 NRSN1Q8IZ57 195 aa12.1□□□□□ -0.47
COL6A3-206ENST00000409809 IL17RCQ8NAC3 791 aa12.1□□□□□ -0.47
COL6A3-206ENST00000409809 MMP26Q9NRE1 261 aa12.1□□□□□ -0.47
COL6A3-206ENST00000409809 DUSP28Q4G0W2 176 aa12.1□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms