RNA–Protein interactions for RNA: ENST00000409435.5

SCN9A-202, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 5,967 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-202ENST00000409435 SMPD2O60906 423 aa6.8□□□□□ -1.32
SCN9A-202ENST00000409435 ZNF883P0CG24 379 aa6.8□□□□□ -1.32
SCN9A-202ENST00000409435 MEOX1P50221 254 aa6.8□□□□□ -1.32
SCN9A-202ENST00000409435 GFERP55789 205 aa6.8□□□□□ -1.32
SCN9A-202ENST00000409435 DBPQ10586 325 aaPredicted RBP6.8□□□□□ -1.32
SCN9A-202ENST00000409435 ANKRD22Q5VYY1 191 aa6.8□□□□□ -1.32
SCN9A-202ENST00000409435 AFMIDQ63HM1 303 aa6.8□□□□□ -1.32
SCN9A-202ENST00000409435 TMPRSS7Q7RTY8 843 aa6.8□□□□□ -1.32
SCN9A-202ENST00000409435 ZER1Q7Z7L7 766 aa6.8□□□□□ -1.32
SCN9A-202ENST00000409435 MISPQ8IVT2 679 aa6.8□□□□□ -1.32
SCN9A-202ENST00000409435 OR4N4Q8N0Y3 316 aa6.8□□□□□ -1.32
SCN9A-202ENST00000409435 OR5H6Q8NGV6 325 aa6.8□□□□□ -1.32
SCN9A-202ENST00000409435 DNAJA3Q96EY1 480 aa6.8□□□□□ -1.32
SCN9A-202ENST00000409435 PLEKHA3Q9HB20 300 aa6.8□□□□□ -1.32
SCN9A-202ENST00000409435 RXFP3Q9NSD7 469 aa6.8□□□□□ -1.32
SCN9A-202ENST00000409435 POMPQ9Y244 141 aa6.8□□□□□ -1.32
SCN9A-202ENST00000409435 AK6Q9Y3D8 172 aaKnown RBP6.8□□□□□ -1.32
SCN9A-202ENST00000409435 WIF1Q9Y5W5 379 aa6.8□□□□□ -1.32
SCN9A-202ENST00000409435 AGAP14A8MT82 685 aa6.8□□□□□ -1.32
SCN9A-202ENST00000409435 SMAD7O15105 426 aaKnown RBP6.8□□□□□ -1.32
SCN9A-202ENST00000409435 TPST2O60704 377 aa6.8□□□□□ -1.32
SCN9A-202ENST00000409435 NME6O75414 186 aaPredicted RBP6.8□□□□□ -1.32
SCN9A-202ENST00000409435 BPGMP07738 259 aa6.8□□□□□ -1.32
SCN9A-202ENST00000409435 POU4F3Q15319 338 aa6.8□□□□□ -1.32
SCN9A-202ENST00000409435 SLC14A2Q15849 920 aa6.8□□□□□ -1.32
SCN9A-202ENST00000409435 B3GNT9Q6UX72 402 aa6.8□□□□□ -1.32
SCN9A-202ENST00000409435 GSG1LQ6UXU4 331 aa6.8□□□□□ -1.32
SCN9A-202ENST00000409435 MRPL21Q7Z2W9 205 aaKnown RBP6.8□□□□□ -1.32
SCN9A-202ENST00000409435 ZNF610Q8N9Z0 462 aa6.8□□□□□ -1.32
SCN9A-202ENST00000409435 OR6K6Q8NGW6 343 aa6.8□□□□□ -1.32
SCN9A-202ENST00000409435 AKR7LQ8NHP1 331 aa6.8□□□□□ -1.32
SCN9A-202ENST00000409435 RAB8BQ92930 207 aa6.8□□□□□ -1.32
SCN9A-202ENST00000409435 C10orf90Q96M02 699 aa6.8□□□□□ -1.32
SCN9A-202ENST00000409435 C1orf21Q9H246 121 aa6.8□□□□□ -1.32
SCN9A-202ENST00000409435 PNPOQ9NVS9 261 aa6.8□□□□□ -1.32
SCN9A-202ENST00000409435 SARDHQ9UL12 918 aa6.8□□□□□ -1.32
SCN9A-202ENST00000409435 STUB1Q9UNE7 303 aa6.8□□□□□ -1.32
SCN9A-202ENST00000409435 NEUROG3Q9Y4Z2 214 aa6.8□□□□□ -1.32
SCN9A-202ENST00000409435 IGHV3-20A0A0C4DH32 117 aa6.8□□□□□ -1.32
SCN9A-202ENST00000409435 TOX3O15405 576 aaPredicted RBP6.8□□□□□ -1.32
SCN9A-202ENST00000409435 LDB3O75112 727 aa6.8□□□□□ -1.32
SCN9A-202ENST00000409435 TXNDC12O95881 172 aa6.8□□□□□ -1.32
SCN9A-202ENST00000409435 CBX7O95931 251 aa6.8□□□□□ -1.32
SCN9A-202ENST00000409435 ZGLP1P0C6A0 271 aa6.8□□□□□ -1.32
SCN9A-202ENST00000409435 POU3F3P20264 500 aaPredicted RBP6.8□□□□□ -1.32
SCN9A-202ENST00000409435 GPR143P51810 404 aa6.8□□□□□ -1.32
SCN9A-202ENST00000409435 SLC25A11Q02978 314 aaKnown RBP6.8□□□□□ -1.32
SCN9A-202ENST00000409435 LY6DQ14210 128 aa6.8□□□□□ -1.32
SCN9A-202ENST00000409435 SPATS1Q496A3 300 aa6.8□□□□□ -1.32
SCN9A-202ENST00000409435 ZMAT1Q5H9K5 638 aa6.8□□□□□ -1.32
SCN9A-202ENST00000409435 FIGNL1Q6PIW4 674 aa6.8□□□□□ -1.32
SCN9A-202ENST00000409435 SMARCD3Q6STE5 483 aa6.8□□□□□ -1.32
SCN9A-202ENST00000409435 TRABD2AQ86V40 505 aa6.8□□□□□ -1.32
SCN9A-202ENST00000409435 ANKRD46Q86W74 232 aa6.8□□□□□ -1.32
SCN9A-202ENST00000409435 ZNF561Q8N587 486 aa6.8□□□□□ -1.32
SCN9A-202ENST00000409435 GLB1L3Q8NCI6 653 aaPredicted RBP6.8□□□□□ -1.32
SCN9A-202ENST00000409435 OR11A1Q9GZK7 315 aa6.8□□□□□ -1.32
SCN9A-202ENST00000409435 POPDC3Q9HBV1 291 aa6.8□□□□□ -1.32
SCN9A-202ENST00000409435 ASH2LQ9UBL3 628 aa6.8□□□□□ -1.32
SCN9A-202ENST00000409435 NKX6-3A6NJ46 265 aa6.8□□□□□ -1.32
SCN9A-202ENST00000409435 AQP12BA6NM10 295 aa6.8□□□□□ -1.32
SCN9A-202ENST00000409435 ANKRD30BLA7E2S9 258 aa6.8□□□□□ -1.32
SCN9A-202ENST00000409435 HHLA1C9JL84 531 aa6.8□□□□□ -1.32
SCN9A-202ENST00000409435 ZNF587BE7ETH6 402 aa6.8□□□□□ -1.32
SCN9A-202ENST00000409435 ITGB2P05107 769 aa6.8□□□□□ -1.32
SCN9A-202ENST00000409435 AHRP35869 848 aa6.8□□□□□ -1.32
SCN9A-202ENST00000409435 CDH12P55289 794 aa6.8□□□□□ -1.32
SCN9A-202ENST00000409435 REEP5Q00765 189 aa6.8□□□□□ -1.32
SCN9A-202ENST00000409435 Q3ZCU0 254 aa6.8□□□□□ -1.32
SCN9A-202ENST00000409435 PET117Q6UWS5 81 aa6.8□□□□□ -1.32
SCN9A-202ENST00000409435 CD163Q86VB7 1156 aa6.8□□□□□ -1.32
SCN9A-202ENST00000409435 AQP12AQ8IXF9 295 aa6.8□□□□□ -1.32
SCN9A-202ENST00000409435 CNOT9Q92600 299 aaKnown RBP6.8□□□□□ -1.32
SCN9A-202ENST00000409435 ADOQ96SZ5 270 aa6.8□□□□□ -1.32
SCN9A-202ENST00000409435 FAM173AQ9BQD7 235 aa6.8□□□□□ -1.32
SCN9A-202ENST00000409435 CENPOQ9BU64 300 aa6.8□□□□□ -1.32
SCN9A-202ENST00000409435 LIN28AQ9H9Z2 209 aaKnown RBP6.8□□□□□ -1.32
SCN9A-202ENST00000409435 PLCXD1Q9NUJ7 323 aa6.8□□□□□ -1.32
SCN9A-202ENST00000409435 OXSMQ9NWU1 459 aa6.8□□□□□ -1.32
SCN9A-202ENST00000409435 MRPL22Q9NWU5 206 aaKnown RBP6.8□□□□□ -1.32
SCN9A-202ENST00000409435 CDH10Q9Y6N8 788 aa6.8□□□□□ -1.32
SCN9A-202ENST00000409435 TAF1P21675 1872 aa6.8□□□□□ -1.32
SCN9A-202ENST00000409435 SLC22A20A6NK97 555 aa6.8□□□□□ -1.32
SCN9A-202ENST00000409435 KIAA1324LA8MWY0 1029 aaPredicted RBP6.8□□□□□ -1.32
SCN9A-202ENST00000409435 ENSAO43768 121 aaKnown RBP6.8□□□□□ -1.32
SCN9A-202ENST00000409435 ETFAP13804 333 aa6.8□□□□□ -1.32
SCN9A-202ENST00000409435 IDUAP35475 653 aa6.8□□□□□ -1.32
SCN9A-202ENST00000409435 FXNQ16595 210 aa6.8□□□□□ -1.32
SCN9A-202ENST00000409435 RNF212Q495C1 297 aa6.8□□□□□ -1.32
SCN9A-202ENST00000409435 MAMDC2Q7Z304 686 aaPredicted RBP6.8□□□□□ -1.32
SCN9A-202ENST00000409435 ZDHHC21Q8IVQ6 265 aa6.8□□□□□ -1.32
SCN9A-202ENST00000409435 WFDC5Q8TCV5 224 aa6.8□□□□□ -1.32
SCN9A-202ENST00000409435 NPRL2Q8WTW4 380 aa6.8□□□□□ -1.32
SCN9A-202ENST00000409435 OR5P2Q8WZ92 322 aa6.8□□□□□ -1.32
SCN9A-202ENST00000409435 NSMAFQ92636 917 aa6.8□□□□□ -1.32
SCN9A-202ENST00000409435 APH1AQ96BI3 265 aa6.8□□□□□ -1.32
SCN9A-202ENST00000409435 RSPRY1Q96DX4 576 aa6.8□□□□□ -1.32
SCN9A-202ENST00000409435 MVB12AQ96EY5 273 aa6.8□□□□□ -1.32
SCN9A-202ENST00000409435 SGCZQ96LD1 299 aa6.8□□□□□ -1.32
SCN9A-202ENST00000409435 LMF2Q9BU23 707 aaKnown RBP6.8□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 69.6 ms