RNA–Protein interactions for RNA: ENST00000401394.5

CTCF-202, Transcript of CCCTC-binding factor, humanhuman

TSL 1 (best) BASIC

Gene CTCF, Length 2,978 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-202ENST00000401394 TUSC1Q2TAM9 212 aa19.36■□□□□ 0.69
CTCF-202ENST00000401394 DMKNQ6E0U4 476 aaPredicted RBP19.36■□□□□ 0.69
CTCF-202ENST00000401394 CNKSR3Q6P9H4 555 aa19.36■□□□□ 0.69
CTCF-202ENST00000401394 APOOLQ6UXV4 268 aa19.36■□□□□ 0.69
CTCF-202ENST00000401394 FCRLAQ7L513 359 aa19.36■□□□□ 0.69
CTCF-202ENST00000401394 ELMOD3Q96FG2 381 aa19.36■□□□□ 0.69
CTCF-202ENST00000401394 SFXN2Q96NB2 322 aa19.36■□□□□ 0.69
CTCF-202ENST00000401394 SARGQ9BW04 601 aa19.36■□□□□ 0.69
CTCF-202ENST00000401394 TSPAN10Q9H1Z9 355 aaPredicted RBP19.36■□□□□ 0.69
CTCF-202ENST00000401394 PRR32B1ATL7 298 aa19.36■□□□□ 0.69
CTCF-202ENST00000401394 PIN1P1O15428 100 aa19.36■□□□□ 0.69
CTCF-202ENST00000401394 GDI2P50395 445 aaKnown RBP19.36■□□□□ 0.69
CTCF-202ENST00000401394 EEF1A1P68104 462 aaKnown RBP19.36■□□□□ 0.69
CTCF-202ENST00000401394 ARHGAP19Q14CB8 494 aa19.36■□□□□ 0.69
CTCF-202ENST00000401394 TMEM52Q8NDY8 209 aa19.36■□□□□ 0.69
CTCF-202ENST00000401394 OR5T3Q8NGG3 340 aa19.36■□□□□ 0.69
CTCF-202ENST00000401394 HAVCR2Q8TDQ0 301 aa19.36■□□□□ 0.69
CTCF-202ENST00000401394 TRAF4Q9BUZ4 470 aaPredicted RBP19.36■□□□□ 0.69
CTCF-202ENST00000401394 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP19.36■□□□□ 0.69
CTCF-202ENST00000401394 RPS6KB2Q9UBS0 482 aa19.36■□□□□ 0.69
CTCF-202ENST00000401394 MYO9BQ13459 2157 aa19.36■□□□□ 0.69
CTCF-202ENST00000401394 LRRC72A6NJI9 287 aa19.35■□□□□ 0.69
CTCF-202ENST00000401394 SELENOFO60613 162 aa19.35■□□□□ 0.69
CTCF-202ENST00000401394 UBL3O95164 117 aa19.35■□□□□ 0.69
CTCF-202ENST00000401394 ACSM4P0C7M7 580 aa19.35■□□□□ 0.69
CTCF-202ENST00000401394 VN1R4Q7Z5H5 301 aa19.35■□□□□ 0.69
CTCF-202ENST00000401394 STPG2Q8N412 459 aa19.35■□□□□ 0.69
CTCF-202ENST00000401394 LNX2Q8N448 690 aa19.35■□□□□ 0.69
CTCF-202ENST00000401394 COQ8AQ8NI60 647 aa19.35■□□□□ 0.69
CTCF-202ENST00000401394 OTUB2Q96DC9 234 aa19.35■□□□□ 0.69
CTCF-202ENST00000401394 C10orf90Q96M02 699 aa19.35■□□□□ 0.69
CTCF-202ENST00000401394 ARPC5LQ9BPX5 153 aa19.35■□□□□ 0.69
CTCF-202ENST00000401394 HRASLSQ9HDD0 168 aa19.35■□□□□ 0.69
CTCF-202ENST00000401394 NOX4Q9NPH5 578 aa19.35■□□□□ 0.69
CTCF-202ENST00000401394 ZNF69Q9UC07 566 aa19.35■□□□□ 0.69
CTCF-202ENST00000401394 SATB2Q9UPW6 733 aa19.35■□□□□ 0.69
CTCF-202ENST00000401394 PCDHGA5Q9Y5G8 931 aa19.35■□□□□ 0.69
CTCF-202ENST00000401394 AUP1Q9Y679 476 aa19.35■□□□□ 0.69
CTCF-202ENST00000401394 MEIS3P1A6NDR6 274 aa19.35■□□□□ 0.69
CTCF-202ENST00000401394 TBC1D3BA6NDS4 549 aa19.35■□□□□ 0.69
CTCF-202ENST00000401394 RPS27P42677 84 aaKnown RBP19.35■□□□□ 0.69
CTCF-202ENST00000401394 ARHGDIBP52566 201 aa19.35■□□□□ 0.69
CTCF-202ENST00000401394 ELAVL3Q14576 367 aaKnown RBP19.35■□□□□ 0.69
CTCF-202ENST00000401394 COL28A1Q2UY09 1125 aa19.35■□□□□ 0.69
CTCF-202ENST00000401394 RD3Q7Z3Z2 195 aa19.35■□□□□ 0.69
CTCF-202ENST00000401394 GID4Q8IVV7 300 aa19.35■□□□□ 0.69
CTCF-202ENST00000401394 CNOT9Q92600 299 aaKnown RBP19.35■□□□□ 0.69
CTCF-202ENST00000401394 WDR26Q9H7D7 661 aa19.35■□□□□ 0.69
CTCF-202ENST00000401394 MED17Q9NVC6 651 aa19.35■□□□□ 0.69
CTCF-202ENST00000401394 C2orf42Q9NWW7 574 aa19.35■□□□□ 0.69
CTCF-202ENST00000401394 OR5K3A6NET4 321 aa19.35■□□□□ 0.69
CTCF-202ENST00000401394 OR2W5A6NFC9 320 aa19.35■□□□□ 0.69
CTCF-202ENST00000401394 P2RX6O15547 441 aa19.35■□□□□ 0.69
CTCF-202ENST00000401394 LYPD3O95274 346 aa19.35■□□□□ 0.69
CTCF-202ENST00000401394 CPMP14384 443 aa19.35■□□□□ 0.69
CTCF-202ENST00000401394 LCN1P31025 176 aa19.35■□□□□ 0.69
CTCF-202ENST00000401394 DRD3P35462 400 aa19.35■□□□□ 0.69
CTCF-202ENST00000401394 BTN2A1Q7KYR7 527 aa19.35■□□□□ 0.69
CTCF-202ENST00000401394 WBP1Q96G27 269 aa19.35■□□□□ 0.69
CTCF-202ENST00000401394 C12orf4Q9NQ89 552 aa19.35■□□□□ 0.69
CTCF-202ENST00000401394 CMC2Q9NRP2 79 aa19.35■□□□□ 0.69
CTCF-202ENST00000401394 MGAT4CQ9UBM8 478 aa19.35■□□□□ 0.69
CTCF-202ENST00000401394 CA5BQ9Y2D0 317 aa19.35■□□□□ 0.69
CTCF-202ENST00000401394 CHURC1-FNTBB4DL54 471 aa19.34■□□□□ 0.69
CTCF-202ENST00000401394 RRASP10301 218 aa19.34■□□□□ 0.69
CTCF-202ENST00000401394 HIST1H1CP16403 213 aaKnown RBP19.34■□□□□ 0.69
CTCF-202ENST00000401394 M6PRP20645 277 aa19.34■□□□□ 0.69
CTCF-202ENST00000401394 MMP15P51511 669 aa19.34■□□□□ 0.69
CTCF-202ENST00000401394 CCR9P51686 369 aa19.34■□□□□ 0.69
CTCF-202ENST00000401394 RUNX2Q13950 521 aa19.34■□□□□ 0.69
CTCF-202ENST00000401394 NNATQ16517 81 aa19.34■□□□□ 0.69
CTCF-202ENST00000401394 SFXN5Q8TD22 340 aa19.34■□□□□ 0.69
CTCF-202ENST00000401394 BRIX1Q8TDN6 353 aaKnown RBP19.34■□□□□ 0.69
CTCF-202ENST00000401394 CFHR5Q9BXR6 569 aa19.34■□□□□ 0.69
CTCF-202ENST00000401394 FLRT2O43155 660 aa19.34■□□□□ 0.69
CTCF-202ENST00000401394 RPP14O95059 124 aaKnown RBP19.34■□□□□ 0.69
CTCF-202ENST00000401394 LINC00271P0C7V0 271 aa19.34■□□□□ 0.69
CTCF-202ENST00000401394 AK4P27144 223 aaPredicted RBP19.34■□□□□ 0.69
CTCF-202ENST00000401394 OR4N2Q8NGD1 307 aa19.34■□□□□ 0.69
CTCF-202ENST00000401394 TSSK2Q96PF2 358 aa19.34■□□□□ 0.69
CTCF-202ENST00000401394 ERMAPQ96PL5 475 aaPredicted RBP19.34■□□□□ 0.69
CTCF-202ENST00000401394 MTHFD2LQ9H903 347 aaPredicted RBP19.34■□□□□ 0.69
CTCF-202ENST00000401394 PIPOXQ9P0Z9 390 aa19.34■□□□□ 0.69
CTCF-202ENST00000401394 TRBV2A0A0J9YWF9 115 aa19.33■□□□□ 0.69
CTCF-202ENST00000401394 TRAPPC13A5PLN9 417 aa19.33■□□□□ 0.69
CTCF-202ENST00000401394 LAMP2P13473 410 aa19.33■□□□□ 0.69
CTCF-202ENST00000401394 OPCMLQ14982 345 aa19.33■□□□□ 0.69
CTCF-202ENST00000401394 IRF4Q15306 451 aa19.33■□□□□ 0.69
CTCF-202ENST00000401394 GRAMD2AQ8IUY3 354 aa19.33■□□□□ 0.69
CTCF-202ENST00000401394 OR8K3Q8NH51 312 aa19.33■□□□□ 0.69
CTCF-202ENST00000401394 OR4C6Q8NH72 309 aa19.33■□□□□ 0.69
CTCF-202ENST00000401394 MOSPD2Q8NHP6 518 aa19.33■□□□□ 0.69
CTCF-202ENST00000401394 CCL4L1Q8NHW4 92 aa19.33■□□□□ 0.69
CTCF-202ENST00000401394 RBPMSQ93062 196 aaKnown RBP19.33■□□□□ 0.69
CTCF-202ENST00000401394 SIPA1Q96FS4 1042 aa19.33■□□□□ 0.69
CTCF-202ENST00000401394 KCNK15Q9H427 330 aa19.33■□□□□ 0.69
CTCF-202ENST00000401394 FLRT3Q9NZU0 649 aa19.33■□□□□ 0.69
CTCF-202ENST00000401394 NUP50Q9UKX7 468 aa19.33■□□□□ 0.69
CTCF-202ENST00000401394 A0A1W2PP55 124 aa19.33■□□□□ 0.68
CTCF-202ENST00000401394 BMP8BP34820 402 aa19.33■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 61.6 ms