RNA–Protein interactions for RNA: ENST00000392003.6

COL6A3-204, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2 BASIC

Gene COL6A3, Length 3,464 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-204ENST00000392003 MAPK14Q16539 360 aa8.92□□□□□ -0.98
COL6A3-204ENST00000392003 AMZ1Q400G9 498 aa8.92□□□□□ -0.98
COL6A3-204ENST00000392003 FLYWCH1Q4VC44 716 aa8.92□□□□□ -0.98
COL6A3-204ENST00000392003 SLC35F1Q5T1Q4 408 aa8.92□□□□□ -0.98
COL6A3-204ENST00000392003 PRSS41Q7RTY9 318 aa8.92□□□□□ -0.98
COL6A3-204ENST00000392003 ZNF680Q8NEM1 530 aa8.92□□□□□ -0.98
COL6A3-204ENST00000392003 BRIX1Q8TDN6 353 aaKnown RBP8.92□□□□□ -0.98
COL6A3-204ENST00000392003 SLC22A4Q9H015 551 aa8.92□□□□□ -0.98
COL6A3-204ENST00000392003 FN3KQ9H479 309 aa8.92□□□□□ -0.98
COL6A3-204ENST00000392003 POLE3Q9NRF9 147 aa8.92□□□□□ -0.98
COL6A3-204ENST00000392003 ZNF224Q9NZL3 707 aa8.92□□□□□ -0.98
COL6A3-204ENST00000392003 COMMD3Q9UBI1 195 aa8.92□□□□□ -0.98
COL6A3-204ENST00000392003 CBLCQ9ULV8 474 aa8.92□□□□□ -0.98
COL6A3-204ENST00000392003 MRPS33Q9Y291 106 aaKnown RBP8.92□□□□□ -0.98
COL6A3-204ENST00000392003 EXOGQ9Y2C4 368 aaKnown RBP8.92□□□□□ -0.98
COL6A3-204ENST00000392003 A0A1B0GWJ7 208 aa8.92□□□□□ -0.98
COL6A3-204ENST00000392003 FAM183AA6NL82 134 aa8.92□□□□□ -0.98
COL6A3-204ENST00000392003 PEX12O00623 359 aa8.92□□□□□ -0.98
COL6A3-204ENST00000392003 KLF4O43474 513 aa8.92□□□□□ -0.98
COL6A3-204ENST00000392003 HCN1O60741 890 aa8.92□□□□□ -0.98
COL6A3-204ENST00000392003 FMO6PO60774 539 aa8.92□□□□□ -0.98
COL6A3-204ENST00000392003 CLN5O75503 358 aa8.92□□□□□ -0.98
COL6A3-204ENST00000392003 SLC2A10O95528 541 aa8.92□□□□□ -0.98
COL6A3-204ENST00000392003 THY1P04216 161 aa8.92□□□□□ -0.98
COL6A3-204ENST00000392003 SRFP11831 508 aa8.92□□□□□ -0.98
COL6A3-204ENST00000392003 PRG2P13727 222 aa8.92□□□□□ -0.98
COL6A3-204ENST00000392003 NOS3P29474 1203 aa8.92□□□□□ -0.98
COL6A3-204ENST00000392003 INPP1P49441 399 aa8.92□□□□□ -0.98
COL6A3-204ENST00000392003 RNF144AP50876 292 aaPredicted RBP8.92□□□□□ -0.98
COL6A3-204ENST00000392003 RAB38P57729 211 aa8.92□□□□□ -0.98
COL6A3-204ENST00000392003 FABP5Q01469 135 aa8.92□□□□□ -0.98
COL6A3-204ENST00000392003 ZNF517Q6ZMY9 492 aaPredicted RBP8.92□□□□□ -0.98
COL6A3-204ENST00000392003 KLBQ86Z14 1044 aa8.92□□□□□ -0.98
COL6A3-204ENST00000392003 BBS1Q8NFJ9 593 aa8.92□□□□□ -0.98
COL6A3-204ENST00000392003 OR4C6Q8NH72 309 aa8.92□□□□□ -0.98
COL6A3-204ENST00000392003 NEIL3Q8TAT5 605 aa8.92□□□□□ -0.98
COL6A3-204ENST00000392003 GPBAR1Q8TDU6 330 aa8.92□□□□□ -0.98
COL6A3-204ENST00000392003 BPIFA2Q96DR5 249 aa8.92□□□□□ -0.98
COL6A3-204ENST00000392003 FYTTD1Q96QD9 318 aaKnown RBP8.92□□□□□ -0.98
COL6A3-204ENST00000392003 SDHCQ99643 169 aaPredicted RBP8.92□□□□□ -0.98
COL6A3-204ENST00000392003 KATNB1Q9BVA0 655 aa8.92□□□□□ -0.98
COL6A3-204ENST00000392003 HDHD5Q9BXW7 423 aa8.92□□□□□ -0.98
COL6A3-204ENST00000392003 SRRQ9GZT4 340 aa8.92□□□□□ -0.98
COL6A3-204ENST00000392003 TCEAL2Q9H3H9 227 aaPredicted RBP8.92□□□□□ -0.98
COL6A3-204ENST00000392003 RPS6KB2Q9UBS0 482 aa8.92□□□□□ -0.98
COL6A3-204ENST00000392003 MUTYHQ9UIF7 546 aa8.92□□□□□ -0.98
COL6A3-204ENST00000392003 HRH3Q9Y5N1 445 aa8.92□□□□□ -0.98
COL6A3-204ENST00000392003 V9GYH0 126 aa8.92□□□□□ -0.98
COL6A3-204ENST00000392003 CDHR4A6H8M9 788 aa8.91□□□□□ -0.98
COL6A3-204ENST00000392003 SGK494L7N484 410 aa8.91□□□□□ -0.98
COL6A3-204ENST00000392003 CDC42EP2O14613 210 aa8.91□□□□□ -0.98
COL6A3-204ENST00000392003 SNRPNP63162 240 aaKnown RBP8.91□□□□□ -0.98
COL6A3-204ENST00000392003 FHL5Q5TD97 284 aa8.91□□□□□ -0.98
COL6A3-204ENST00000392003 AGAP6Q5VW22 663 aa8.91□□□□□ -0.98
COL6A3-204ENST00000392003 RNF44Q7L0R7 432 aa8.91□□□□□ -0.98
COL6A3-204ENST00000392003 MEPCEQ7L2J0 689 aaKnown RBP8.91□□□□□ -0.98
COL6A3-204ENST00000392003 PRSS42Q7Z5A4 293 aa8.91□□□□□ -0.98
COL6A3-204ENST00000392003 NRARPQ7Z6K4 114 aa8.91□□□□□ -0.98
COL6A3-204ENST00000392003 CA13Q8N1Q1 262 aa8.91□□□□□ -0.98
COL6A3-204ENST00000392003 VWA5B2Q8N398 1253 aa8.91□□□□□ -0.98
COL6A3-204ENST00000392003 C19orf18Q8NEA5 215 aa8.91□□□□□ -0.98
COL6A3-204ENST00000392003 GRHL3Q8TE85 626 aa8.91□□□□□ -0.98
COL6A3-204ENST00000392003 SLC37A2Q8TED4 501 aa8.91□□□□□ -0.98
COL6A3-204ENST00000392003 ST6GAL2Q96JF0 529 aa8.91□□□□□ -0.98
COL6A3-204ENST00000392003 AGAP4Q96P64 663 aa8.91□□□□□ -0.98
COL6A3-204ENST00000392003 ASB6Q9NWX5 421 aa8.91□□□□□ -0.98
COL6A3-204ENST00000392003 SF3B6Q9Y3B4 125 aaKnown RBP8.91□□□□□ -0.98
COL6A3-204ENST00000392003 CENPVL1A0A0U1RR11 272 aa8.91□□□□□ -0.98
COL6A3-204ENST00000392003 A0A1W2PQ09 198 aa8.91□□□□□ -0.98
COL6A3-204ENST00000392003 CCDC182A6NF36 153 aa8.91□□□□□ -0.98
COL6A3-204ENST00000392003 CYR61O00622 381 aa8.91□□□□□ -0.98
COL6A3-204ENST00000392003 ZNF780AO75290 641 aaPredicted RBP8.91□□□□□ -0.98
COL6A3-204ENST00000392003 RDH16O75452 317 aa8.91□□□□□ -0.98
COL6A3-204ENST00000392003 IFNGP01579 166 aa8.91□□□□□ -0.98
COL6A3-204ENST00000392003 FABP1P07148 127 aa8.91□□□□□ -0.98
COL6A3-204ENST00000392003 STX4Q12846 297 aa8.91□□□□□ -0.98
COL6A3-204ENST00000392003 PRICKLE4Q2TBC4 344 aa8.91□□□□□ -0.98
COL6A3-204ENST00000392003 TRIQKQ629K1 86 aa8.91□□□□□ -0.98
COL6A3-204ENST00000392003 FCRLBQ6BAA4 426 aa8.91□□□□□ -0.98
COL6A3-204ENST00000392003 ARHGAP11AQ6P4F7 1023 aa8.91□□□□□ -0.98
COL6A3-204ENST00000392003 SYT14Q8NB59 555 aa8.91□□□□□ -0.98
COL6A3-204ENST00000392003 OR10H4Q8NGA5 316 aa8.91□□□□□ -0.98
COL6A3-204ENST00000392003 OR52R1Q8NGF1 315 aa8.91□□□□□ -0.98
COL6A3-204ENST00000392003 ART5Q96L15 291 aa8.91□□□□□ -0.98
COL6A3-204ENST00000392003 OR51V1Q9H2C8 321 aa8.91□□□□□ -0.98
COL6A3-204ENST00000392003 ESRP2Q9H6T0 727 aaKnown RBP8.91□□□□□ -0.98
COL6A3-204ENST00000392003 STARD5Q9NSY2 213 aa8.91□□□□□ -0.98
COL6A3-204ENST00000392003 PLEKHB1Q9UF11 243 aaPredicted RBP8.91□□□□□ -0.98
COL6A3-204ENST00000392003 SCN2AQ99250 2005 aa8.91□□□□□ -0.98
COL6A3-204ENST00000392003 SLC22A31A6NKX4 558 aa8.9□□□□□ -0.98
COL6A3-204ENST00000392003 GABRPO00591 440 aa8.9□□□□□ -0.98
COL6A3-204ENST00000392003 IGHA1P01876 353 aa8.9□□□□□ -0.98
COL6A3-204ENST00000392003 SLC35E2P0CK97 266 aa8.9□□□□□ -0.98
COL6A3-204ENST00000392003 RPS4Y1P22090 263 aaKnown RBP8.9□□□□□ -0.98
COL6A3-204ENST00000392003 SOX18P35713 384 aa8.9□□□□□ -0.98
COL6A3-204ENST00000392003 LSSP48449 732 aa8.9□□□□□ -0.98
COL6A3-204ENST00000392003 HHEXQ03014 270 aa8.9□□□□□ -0.98
COL6A3-204ENST00000392003 ZMAT1Q5H9K5 638 aa8.9□□□□□ -0.98
COL6A3-204ENST00000392003 ZNF613Q6PF04 617 aa8.9□□□□□ -0.98
COL6A3-204ENST00000392003 ZNF322Q6U7Q0 402 aaPredicted RBP8.9□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms