RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 B4DXG7 233 aa12.28□□□□□ -0.44
CCDC3-202ENST00000378839 CCNKO75909 580 aa12.28□□□□□ -0.44
CCDC3-202ENST00000378839 RGS9O75916 674 aaPredicted RBP12.28□□□□□ -0.44
CCDC3-202ENST00000378839 ELK1P19419 428 aa12.28□□□□□ -0.44
CCDC3-202ENST00000378839 BCL2A1Q16548 175 aa12.28□□□□□ -0.44
CCDC3-202ENST00000378839 FAM209AQ5JX71 171 aa12.28□□□□□ -0.44
CCDC3-202ENST00000378839 ATAD3CQ5T2N8 411 aa12.28□□□□□ -0.44
CCDC3-202ENST00000378839 CHRDL2Q6WN34 429 aa12.28□□□□□ -0.44
CCDC3-202ENST00000378839 GDPD1Q8N9F7 314 aa12.28□□□□□ -0.44
CCDC3-202ENST00000378839 OR52E2Q8NGJ4 325 aa12.28□□□□□ -0.44
CCDC3-202ENST00000378839 TP53INP1Q96A56 240 aa12.28□□□□□ -0.44
CCDC3-202ENST00000378839 MAU2Q9Y6X3 613 aa12.28□□□□□ -0.44
CCDC3-202ENST00000378839 A0A0G2JK05 382 aa12.28□□□□□ -0.44
CCDC3-202ENST00000378839 C17orf51A8MQB3 221 aa12.28□□□□□ -0.44
CCDC3-202ENST00000378839 CHURC1-FNTBB4DL54 471 aa12.28□□□□□ -0.44
CCDC3-202ENST00000378839 J3QLW9 94 aa12.28□□□□□ -0.44
CCDC3-202ENST00000378839 HCN1O60741 890 aa12.28□□□□□ -0.44
CCDC3-202ENST00000378839 RNH1P13489 461 aaKnown RBP12.28□□□□□ -0.44
CCDC3-202ENST00000378839 ZNF19P17023 458 aa12.28□□□□□ -0.44
CCDC3-202ENST00000378839 ACVR1BP36896 505 aa12.28□□□□□ -0.44
CCDC3-202ENST00000378839 FNTBP49356 437 aa12.28□□□□□ -0.44
CCDC3-202ENST00000378839 SCN1BQ07699 218 aa12.28□□□□□ -0.44
CCDC3-202ENST00000378839 SLC3A1Q07837 685 aa12.28□□□□□ -0.44
CCDC3-202ENST00000378839 PRR23CQ6ZRP0 262 aa12.28□□□□□ -0.44
CCDC3-202ENST00000378839 CDK20Q8IZL9 346 aa12.28□□□□□ -0.44
CCDC3-202ENST00000378839 GATSQ8NAP1 163 aa12.28□□□□□ -0.44
CCDC3-202ENST00000378839 ZMYND19Q96E35 227 aaPredicted RBP12.28□□□□□ -0.44
CCDC3-202ENST00000378839 OR10A5Q9H207 317 aa12.28□□□□□ -0.44
CCDC3-202ENST00000378839 PRTFDC1Q9NRG1 225 aa12.28□□□□□ -0.44
CCDC3-202ENST00000378839 ZNF346Q9UL40 294 aaKnown RBP12.28□□□□□ -0.44
CCDC3-202ENST00000378839 POLHQ9Y253 713 aa12.28□□□□□ -0.44
CCDC3-202ENST00000378839 TMEM5Q9Y2B1 443 aa12.28□□□□□ -0.44
CCDC3-202ENST00000378839 MEIOCA2RUB1 952 aa12.28□□□□□ -0.44
CCDC3-202ENST00000378839 FAM86C2PA6NEL3 165 aa12.28□□□□□ -0.44
CCDC3-202ENST00000378839 WISP1O95388 367 aa12.28□□□□□ -0.44
CCDC3-202ENST00000378839 FAM157BP0CG42 384 aa12.28□□□□□ -0.44
CCDC3-202ENST00000378839 PEPDP12955 493 aa12.28□□□□□ -0.44
CCDC3-202ENST00000378839 CAPZBP47756 277 aa12.28□□□□□ -0.44
CCDC3-202ENST00000378839 PPP3R1P63098 170 aa12.28□□□□□ -0.44
CCDC3-202ENST00000378839 CAMK2BQ13554 666 aa12.28□□□□□ -0.44
CCDC3-202ENST00000378839 PRAMEF17Q5VTA0 474 aa12.28□□□□□ -0.44
CCDC3-202ENST00000378839 OR4C6Q8NH72 309 aa12.28□□□□□ -0.44
CCDC3-202ENST00000378839 PMM1Q92871 262 aa12.28□□□□□ -0.44
CCDC3-202ENST00000378839 EFHD2Q96C19 240 aaPredicted RBP12.28□□□□□ -0.44
CCDC3-202ENST00000378839 MMABQ96EY8 250 aaPredicted RBP12.28□□□□□ -0.44
CCDC3-202ENST00000378839 ERMAPQ96PL5 475 aaPredicted RBP12.28□□□□□ -0.44
CCDC3-202ENST00000378839 IGKV1D-42A0A075B6H8 117 aa12.27□□□□□ -0.44
CCDC3-202ENST00000378839 LANCL1O43813 399 aa12.27□□□□□ -0.44
CCDC3-202ENST00000378839 SC5DO75845 299 aa12.27□□□□□ -0.44
CCDC3-202ENST00000378839 BDH1Q02338 343 aa12.27□□□□□ -0.44
CCDC3-202ENST00000378839 FUT7Q11130 342 aa12.27□□□□□ -0.44
CCDC3-202ENST00000378839 CD226Q15762 336 aa12.27□□□□□ -0.44
CCDC3-202ENST00000378839 APOOLQ6UXV4 268 aa12.27□□□□□ -0.44
CCDC3-202ENST00000378839 TRILQ7L0X0 811 aa12.27□□□□□ -0.44
CCDC3-202ENST00000378839 SYT9Q86SS6 491 aa12.27□□□□□ -0.44
CCDC3-202ENST00000378839 RDH10Q8IZV5 341 aa12.27□□□□□ -0.44
CCDC3-202ENST00000378839 ZDHHC19Q8WVZ1 309 aaPredicted RBP12.27□□□□□ -0.44
CCDC3-202ENST00000378839 AP3S1Q92572 193 aa12.27□□□□□ -0.44
CCDC3-202ENST00000378839 ZNF285Q96NJ3 590 aa12.27□□□□□ -0.44
CCDC3-202ENST00000378839 DDOQ99489 341 aa12.27□□□□□ -0.44
CCDC3-202ENST00000378839 RTN4RQ9BZR6 473 aa12.27□□□□□ -0.44
CCDC3-202ENST00000378839 C14orf105Q9NVL8 296 aa12.27□□□□□ -0.44
CCDC3-202ENST00000378839 SERTAD3Q9UJW9 196 aa12.27□□□□□ -0.44
CCDC3-202ENST00000378839 IER3IP1Q9Y5U9 82 aa12.27□□□□□ -0.44
CCDC3-202ENST00000378839 TNRC18O15417 2968 aaPredicted RBP12.27□□□□□ -0.45
CCDC3-202ENST00000378839 EML5Q05BV3 1969 aa12.27□□□□□ -0.45
CCDC3-202ENST00000378839 A0A087WV48 116 aa12.27□□□□□ -0.45
CCDC3-202ENST00000378839 A0A1W2PR77 199 aa12.27□□□□□ -0.45
CCDC3-202ENST00000378839 SLC22A31A6NKX4 558 aa12.27□□□□□ -0.45
CCDC3-202ENST00000378839 MEN1O00255 615 aa12.27□□□□□ -0.45
CCDC3-202ENST00000378839 PLPP2O43688 288 aa12.27□□□□□ -0.45
CCDC3-202ENST00000378839 IDH3BO43837 385 aa12.27□□□□□ -0.45
CCDC3-202ENST00000378839 SLC25A35Q3KQZ1 300 aa12.27□□□□□ -0.45
CCDC3-202ENST00000378839 SNAP47Q5SQN1 464 aa12.27□□□□□ -0.45
CCDC3-202ENST00000378839 RTL4Q6ZR62 310 aa12.27□□□□□ -0.45
CCDC3-202ENST00000378839 Q8N402 240 aa12.27□□□□□ -0.45
CCDC3-202ENST00000378839 OR51Q1Q8NH59 317 aa12.27□□□□□ -0.45
CCDC3-202ENST00000378839 ABHD4Q8TB40 342 aa12.27□□□□□ -0.45
CCDC3-202ENST00000378839 LMX1AQ8TE12 382 aa12.27□□□□□ -0.45
CCDC3-202ENST00000378839 TGM7Q96PF1 710 aa12.27□□□□□ -0.45
CCDC3-202ENST00000378839 COQ7Q99807 217 aa12.27□□□□□ -0.45
CCDC3-202ENST00000378839 NEK6Q9HC98 313 aa12.27□□□□□ -0.45
CCDC3-202ENST00000378839 ST6GALNAC2Q9UJ37 374 aa12.27□□□□□ -0.45
CCDC3-202ENST00000378839 N6AMT1Q9Y5N5 214 aa12.27□□□□□ -0.45
CCDC3-202ENST00000378839 RIIAD1A6NNX1 92 aa12.26□□□□□ -0.45
CCDC3-202ENST00000378839 HLA-DQB1P01920 261 aa12.26□□□□□ -0.45
CCDC3-202ENST00000378839 PROS1P07225 676 aa12.26□□□□□ -0.45
CCDC3-202ENST00000378839 MST1P26927 711 aa12.26□□□□□ -0.45
CCDC3-202ENST00000378839 ATP12AP54707 1039 aa12.26□□□□□ -0.45
CCDC3-202ENST00000378839 TP53I3Q53FA7 332 aa12.26□□□□□ -0.45
CCDC3-202ENST00000378839 IDNKQ5T6J7 187 aa12.26□□□□□ -0.45
CCDC3-202ENST00000378839 RPL13AP3Q6NVV1 102 aa12.26□□□□□ -0.45
CCDC3-202ENST00000378839 SYT13Q7L8C5 426 aa12.26□□□□□ -0.45
CCDC3-202ENST00000378839 RAB43Q86YS6 212 aa12.26□□□□□ -0.45
CCDC3-202ENST00000378839 DGAT2Q96PD7 388 aa12.26□□□□□ -0.45
CCDC3-202ENST00000378839 TRIM2Q9C040 744 aa12.26□□□□□ -0.45
CCDC3-202ENST00000378839 PLSCR3Q9NRY6 295 aa12.26□□□□□ -0.45
CCDC3-202ENST00000378839 ICAM5Q9UMF0 924 aa12.26□□□□□ -0.45
CCDC3-202ENST00000378839 A0A0G2JMP0 313 aa12.26□□□□□ -0.45
CCDC3-202ENST00000378839 A0A0X1KG70 313 aa12.26□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms