RNA–Protein interactions for RNA: ENST00000375820.8

COL4A1-201, Transcript of collagen type IV alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL4A1, Length 6,532 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-201ENST00000375820 FJX1Q86VR8 437 aa12.81□□□□□ -0.36
COL4A1-201ENST00000375820 OR5M1Q8NGP8 315 aa12.81□□□□□ -0.36
COL4A1-201ENST00000375820 SPIN2AQ99865 258 aa12.81□□□□□ -0.36
COL4A1-201ENST00000375820 SPIN2BQ9BPZ2 258 aa12.81□□□□□ -0.36
COL4A1-201ENST00000375820 GNB4Q9HAV0 340 aa12.81□□□□□ -0.36
COL4A1-201ENST00000375820 GFOD1Q9NXC2 390 aa12.81□□□□□ -0.36
COL4A1-201ENST00000375820 MYH3P11055 1940 aa12.81□□□□□ -0.36
COL4A1-201ENST00000375820 MED1Q15648 1581 aaPredicted RBP12.81□□□□□ -0.36
COL4A1-201ENST00000375820 I6L893 689 aaPredicted RBP12.81□□□□□ -0.36
COL4A1-201ENST00000375820 ADAMTS4O75173 837 aa12.81□□□□□ -0.36
COL4A1-201ENST00000375820 OR8G3PP0DMU2 310 aa12.81□□□□□ -0.36
COL4A1-201ENST00000375820 TPT1P13693 172 aaKnown RBP12.81□□□□□ -0.36
COL4A1-201ENST00000375820 SPRED3Q2MJR0 410 aa12.81□□□□□ -0.36
COL4A1-201ENST00000375820 TBPL2Q6SJ96 375 aa12.81□□□□□ -0.36
COL4A1-201ENST00000375820 ZNF486Q96H40 463 aaPredicted RBP12.81□□□□□ -0.36
COL4A1-201ENST00000375820 TXNL4BQ9NX01 149 aaKnown RBP12.81□□□□□ -0.36
COL4A1-201ENST00000375820 IL37Q9NZH6 218 aa12.81□□□□□ -0.36
COL4A1-201ENST00000375820 TRBV4-1A0A0J9YWV2 114 aa12.81□□□□□ -0.36
COL4A1-201ENST00000375820 SMLR1H3BR10 107 aa12.81□□□□□ -0.36
COL4A1-201ENST00000375820 OR7C1O76099 320 aaPredicted RBP12.81□□□□□ -0.36
COL4A1-201ENST00000375820 PTTG1O95997 202 aa12.81□□□□□ -0.36
COL4A1-201ENST00000375820 RAB33AQ14088 237 aa12.81□□□□□ -0.36
COL4A1-201ENST00000375820 LCTLQ6UWM7 567 aa12.81□□□□□ -0.36
COL4A1-201ENST00000375820 SPARTQ8N0X7 666 aa12.81□□□□□ -0.36
COL4A1-201ENST00000375820 ZFAND2BQ8WV99 257 aa12.81□□□□□ -0.36
COL4A1-201ENST00000375820 SLC6A17Q9H1V8 727 aa12.81□□□□□ -0.36
COL4A1-201ENST00000375820 VRTNQ9H8Y1 702 aa12.81□□□□□ -0.36
COL4A1-201ENST00000375820 PRMT8Q9NR22 394 aaPredicted RBP12.81□□□□□ -0.36
COL4A1-201ENST00000375820 MRPL22Q9NWU5 206 aaKnown RBP12.81□□□□□ -0.36
COL4A1-201ENST00000375820 ENPP5Q9UJA9 477 aa12.81□□□□□ -0.36
COL4A1-201ENST00000375820 ANKRD26Q9UPS8 1709 aa12.81□□□□□ -0.36
COL4A1-201ENST00000375820 A0A1W2PS29 197 aa12.81□□□□□ -0.36
COL4A1-201ENST00000375820 C7P10643 843 aa12.81□□□□□ -0.36
COL4A1-201ENST00000375820 KITLGP21583 273 aa12.81□□□□□ -0.36
COL4A1-201ENST00000375820 GPX3P22352 226 aa12.81□□□□□ -0.36
COL4A1-201ENST00000375820 GABRA5P31644 462 aa12.81□□□□□ -0.36
COL4A1-201ENST00000375820 RPL11P62913 178 aaKnown RBP12.81□□□□□ -0.36
COL4A1-201ENST00000375820 CTBSQ01459 385 aa12.81□□□□□ -0.36
COL4A1-201ENST00000375820 LTB4RQ15722 352 aa12.81□□□□□ -0.36
COL4A1-201ENST00000375820 CTSL3PQ5NE16 218 aa12.81□□□□□ -0.36
COL4A1-201ENST00000375820 ZC3HAV1Q7Z2W4 902 aaKnown RBP12.81□□□□□ -0.36
COL4A1-201ENST00000375820 DCP2Q8IU60 420 aaKnown RBP12.81□□□□□ -0.36
COL4A1-201ENST00000375820 TUBB1Q9H4B7 451 aa12.81□□□□□ -0.36
COL4A1-201ENST00000375820 DCAF13Q9NV06 445 aaKnown RBP12.81□□□□□ -0.36
COL4A1-201ENST00000375820 IGHV3-64DA0A0J9YX35 117 aa12.8□□□□□ -0.36
COL4A1-201ENST00000375820 FADS1O60427 444 aa12.8□□□□□ -0.36
COL4A1-201ENST00000375820 SNRPBP14678 240 aaKnown RBP12.8□□□□□ -0.36
COL4A1-201ENST00000375820 CYCSP99999 105 aaKnown RBP12.8□□□□□ -0.36
COL4A1-201ENST00000375820 YIF1BQ5BJH7 314 aa12.8□□□□□ -0.36
COL4A1-201ENST00000375820 GRAMD2AQ8IUY3 354 aa12.8□□□□□ -0.36
COL4A1-201ENST00000375820 GLB1L2Q8IW92 636 aa12.8□□□□□ -0.36
COL4A1-201ENST00000375820 ADGRF3Q8IZF5 1079 aa12.8□□□□□ -0.36
COL4A1-201ENST00000375820 OR6F1Q8NGZ6 308 aa12.8□□□□□ -0.36
COL4A1-201ENST00000375820 BRIX1Q8TDN6 353 aaKnown RBP12.8□□□□□ -0.36
COL4A1-201ENST00000375820 CMSS1Q9BQ75 279 aaKnown RBP12.8□□□□□ -0.36
COL4A1-201ENST00000375820 C12orf49Q9H741 205 aa12.8□□□□□ -0.36
COL4A1-201ENST00000375820 RPS10-NUDT3A0A1W2PQS6 291 aa12.8□□□□□ -0.36
COL4A1-201ENST00000375820 SUSD5O60279 629 aa12.8□□□□□ -0.36
COL4A1-201ENST00000375820 RPS10P46783 165 aaKnown RBP12.8□□□□□ -0.36
COL4A1-201ENST00000375820 LYPD4Q6UWN0 246 aa12.8□□□□□ -0.36
COL4A1-201ENST00000375820 MEPCEQ7L2J0 689 aaKnown RBP12.8□□□□□ -0.36
COL4A1-201ENST00000375820 LINC00346Q8IVM7 164 aa12.8□□□□□ -0.36
COL4A1-201ENST00000375820 SECTM1Q8WVN6 248 aa12.8□□□□□ -0.36
COL4A1-201ENST00000375820 FOXRED1Q96CU9 486 aaPredicted RBP12.8□□□□□ -0.36
COL4A1-201ENST00000375820 PRRC1Q96M27 445 aa12.8□□□□□ -0.36
COL4A1-201ENST00000375820 FBXL2Q9UKC9 423 aa12.8□□□□□ -0.36
COL4A1-201ENST00000375820 ZNF337Q9Y3M9 751 aa12.8□□□□□ -0.36
COL4A1-201ENST00000375820 DNAJB5O75953 348 aa12.8□□□□□ -0.36
COL4A1-201ENST00000375820 TIMP1P01033 207 aa12.8□□□□□ -0.36
COL4A1-201ENST00000375820 TAS2R31P59538 309 aa12.8□□□□□ -0.36
COL4A1-201ENST00000375820 SPCS2Q15005 226 aa12.8□□□□□ -0.36
COL4A1-201ENST00000375820 ESCO2Q56NI9 601 aa12.8□□□□□ -0.36
COL4A1-201ENST00000375820 TMEM71Q6P5X7 295 aa12.8□□□□□ -0.36
COL4A1-201ENST00000375820 ALKAL2Q6UX46 152 aa12.8□□□□□ -0.36
COL4A1-201ENST00000375820 OLIG3Q7RTU3 272 aa12.8□□□□□ -0.36
COL4A1-201ENST00000375820 SLC16A14Q7RTX9 510 aa12.8□□□□□ -0.36
COL4A1-201ENST00000375820 BCDIN3DQ7Z5W3 292 aaKnown RBP12.8□□□□□ -0.36
COL4A1-201ENST00000375820 MKXQ8IYA7 352 aa12.8□□□□□ -0.36
COL4A1-201ENST00000375820 PPP1R35Q8TAP8 253 aa12.8□□□□□ -0.36
COL4A1-201ENST00000375820 TANKQ92844 425 aa12.8□□□□□ -0.36
COL4A1-201ENST00000375820 SGK3Q96BR1 496 aa12.8□□□□□ -0.36
COL4A1-201ENST00000375820 MRPL33O75394 65 aaKnown RBP12.8□□□□□ -0.36
COL4A1-201ENST00000375820 BMP2P12643 396 aa12.8□□□□□ -0.36
COL4A1-201ENST00000375820 MRPL2Q5T653 305 aaKnown RBP12.8□□□□□ -0.36
COL4A1-201ENST00000375820 TMEM217Q8N7C4 229 aa12.8□□□□□ -0.36
COL4A1-201ENST00000375820 RNF128Q8TEB7 428 aa12.8□□□□□ -0.36
COL4A1-201ENST00000375820 SORT1Q99523 831 aa12.8□□□□□ -0.36
COL4A1-201ENST00000375820 C1QTNF2Q9BXJ5 285 aa12.8□□□□□ -0.36
COL4A1-201ENST00000375820 HHATLQ9HCP6 504 aa12.8□□□□□ -0.36
COL4A1-201ENST00000375820 ZNF593O00488 134 aaPredicted RBP12.8□□□□□ -0.36
COL4A1-201ENST00000375820 CLEC3BP05452 202 aa12.8□□□□□ -0.36
COL4A1-201ENST00000375820 EBPQ15125 230 aaKnown RBP12.8□□□□□ -0.36
COL4A1-201ENST00000375820 C9orf152Q5JTZ5 239 aa12.8□□□□□ -0.36
COL4A1-201ENST00000375820 RANBP10Q6VN20 620 aa12.8□□□□□ -0.36
COL4A1-201ENST00000375820 BPIFB2Q8N4F0 458 aa12.8□□□□□ -0.36
COL4A1-201ENST00000375820 DUSP19Q8WTR2 217 aa12.8□□□□□ -0.36
COL4A1-201ENST00000375820 MEGF11A6BM72 1044 aa12.79□□□□□ -0.36
COL4A1-201ENST00000375820 HSD17B6O14756 317 aa12.79□□□□□ -0.36
COL4A1-201ENST00000375820 C1orf105O95561 183 aa12.79□□□□□ -0.36
COL4A1-201ENST00000375820 AFF3P51826 1226 aaKnown RBP12.79□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms