RNA–Protein interactions for RNA: ENST00000343916.7

COL9A3-201, Transcript of collagen type IX alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A3, Length 2,485 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-201ENST00000343916 HIST1H1CP16403 213 aaKnown RBP17.79■□□□□ 0.44
COL9A3-201ENST00000343916 HK1P19367 917 aa17.79■□□□□ 0.44
COL9A3-201ENST00000343916 ACVR1BP36896 505 aa17.79■□□□□ 0.44
COL9A3-201ENST00000343916 EVX1P49640 407 aa17.79■□□□□ 0.44
COL9A3-201ENST00000343916 CHCHD2P9Q5T1J5 151 aaPredicted RBP17.79■□□□□ 0.44
COL9A3-201ENST00000343916 ASCC1Q8N9N2 400 aaKnown RBP17.79■□□□□ 0.44
COL9A3-201ENST00000343916 GATSQ8NAP1 163 aa17.79■□□□□ 0.44
COL9A3-201ENST00000343916 TGM7Q96PF1 710 aa17.79■□□□□ 0.44
COL9A3-201ENST00000343916 OR10A5Q9H207 317 aa17.79■□□□□ 0.44
COL9A3-201ENST00000343916 ST6GALNAC1Q9NSC7 600 aaPredicted RBP17.79■□□□□ 0.44
COL9A3-201ENST00000343916 SOHLH2Q9NX45 425 aa17.79■□□□□ 0.44
COL9A3-201ENST00000343916 MTCH2Q9Y6C9 303 aa17.79■□□□□ 0.44
COL9A3-201ENST00000343916 TMEM131Q92545 1883 aa17.79■□□□□ 0.44
COL9A3-201ENST00000343916 CENPXA8MT69 81 aa17.79■□□□□ 0.44
COL9A3-201ENST00000343916 MCIDASD6RGH6 385 aa17.79■□□□□ 0.44
COL9A3-201ENST00000343916 CLDN4O14493 209 aa17.79■□□□□ 0.44
COL9A3-201ENST00000343916 PRAMEF2O60811 474 aa17.79■□□□□ 0.44
COL9A3-201ENST00000343916 CSTAP01040 98 aa17.79■□□□□ 0.44
COL9A3-201ENST00000343916 MT-ND5P03915 603 aa17.79■□□□□ 0.44
COL9A3-201ENST00000343916 PROS1P07225 676 aa17.79■□□□□ 0.44
COL9A3-201ENST00000343916 GAS6Q14393 721 aa17.79■□□□□ 0.44
COL9A3-201ENST00000343916 ZNF141Q15928 474 aa17.79■□□□□ 0.44
COL9A3-201ENST00000343916 FAAH2Q6GMR7 532 aa17.79■□□□□ 0.44
COL9A3-201ENST00000343916 ULK3Q6PHR2 472 aa17.79■□□□□ 0.44
COL9A3-201ENST00000343916 IL20RBQ6UXL0 311 aa17.79■□□□□ 0.44
COL9A3-201ENST00000343916 ZNF595Q8IYB9 648 aa17.79■□□□□ 0.44
COL9A3-201ENST00000343916 BCORP1Q8N888 145 aa17.79■□□□□ 0.44
COL9A3-201ENST00000343916 DTX3Q8N9I9 347 aa17.79■□□□□ 0.44
COL9A3-201ENST00000343916 OR5J2Q8NH18 312 aa17.79■□□□□ 0.44
COL9A3-201ENST00000343916 CLIP3Q96DZ5 547 aa17.79■□□□□ 0.44
COL9A3-201ENST00000343916 ZMYND19Q96E35 227 aaPredicted RBP17.79■□□□□ 0.44
COL9A3-201ENST00000343916 TCTN2Q96GX1 697 aa17.79■□□□□ 0.44
COL9A3-201ENST00000343916 SLC38A3Q99624 504 aa17.79■□□□□ 0.44
COL9A3-201ENST00000343916 SMAD5Q99717 465 aaKnown RBP17.79■□□□□ 0.44
COL9A3-201ENST00000343916 KCNN2Q9H2S1 579 aa17.79■□□□□ 0.44
COL9A3-201ENST00000343916 RPS6KB2Q9UBS0 482 aa17.79■□□□□ 0.44
COL9A3-201ENST00000343916 IGHV5-51A0A0C4DH38 117 aa17.78■□□□□ 0.44
COL9A3-201ENST00000343916 MEIOCA2RUB1 952 aa17.78■□□□□ 0.44
COL9A3-201ENST00000343916 NPIPB9F8W1W9 429 aa17.78■□□□□ 0.44
COL9A3-201ENST00000343916 IMPA2O14732 288 aa17.78■□□□□ 0.44
COL9A3-201ENST00000343916 SLC6A6P31641 620 aa17.78■□□□□ 0.44
COL9A3-201ENST00000343916 ATP12AP54707 1039 aa17.78■□□□□ 0.44
COL9A3-201ENST00000343916 LINC00114Q6XXX2 140 aa17.78■□□□□ 0.44
COL9A3-201ENST00000343916 GLCCI1Q86VQ1 547 aa17.78■□□□□ 0.44
COL9A3-201ENST00000343916 FAM98AQ8NCA5 519 aaKnown RBP17.78■□□□□ 0.44
COL9A3-201ENST00000343916 TSTD1Q8NFU3 115 aa17.78■□□□□ 0.44
COL9A3-201ENST00000343916 DEPDC7Q96QD5 511 aa17.78■□□□□ 0.44
COL9A3-201ENST00000343916 SNX18Q96RF0 628 aa17.78■□□□□ 0.44
COL9A3-201ENST00000343916 SOSTQ9BQB4 213 aa17.78■□□□□ 0.44
COL9A3-201ENST00000343916 CCDC86Q9H6F5 360 aaKnown RBP17.78■□□□□ 0.44
COL9A3-201ENST00000343916 IGHV1OR15-9A0A0B4J2B8 117 aa17.78■□□□□ 0.44
COL9A3-201ENST00000343916 NSA2O95478 260 aaKnown RBP17.78■□□□□ 0.44
COL9A3-201ENST00000343916 PYCR1P32322 319 aa17.78■□□□□ 0.44
COL9A3-201ENST00000343916 RBM34P42696 430 aaKnown RBP17.78■□□□□ 0.44
COL9A3-201ENST00000343916 KIR2DL3P43628 341 aa17.78■□□□□ 0.44
COL9A3-201ENST00000343916 OR10A3P58181 314 aa17.78■□□□□ 0.44
COL9A3-201ENST00000343916 IGLV3-21P80748 117 aaPredicted RBP17.78■□□□□ 0.44
COL9A3-201ENST00000343916 OR13C5Q8NGS8 318 aa17.78■□□□□ 0.44
COL9A3-201ENST00000343916 KIAA1143Q96AT1 154 aaPredicted RBP17.78■□□□□ 0.44
COL9A3-201ENST00000343916 ERVMER34-1Q9H9K5 563 aa17.78■□□□□ 0.44
COL9A3-201ENST00000343916 IER3IP1Q9Y5U9 82 aa17.78■□□□□ 0.44
COL9A3-201ENST00000343916 SEC14L5O43304 696 aa17.77■□□□□ 0.44
COL9A3-201ENST00000343916 NDUFB5O43674 189 aa17.77■□□□□ 0.44
COL9A3-201ENST00000343916 GAAP10253 952 aa17.77■□□□□ 0.44
COL9A3-201ENST00000343916 MLLT3P42568 568 aaPredicted RBP17.77■□□□□ 0.44
COL9A3-201ENST00000343916 FASLGP48023 281 aa17.77■□□□□ 0.44
COL9A3-201ENST00000343916 NKAIN2Q5VXU1 208 aa17.77■□□□□ 0.44
COL9A3-201ENST00000343916 SYT13Q7L8C5 426 aa17.77■□□□□ 0.44
COL9A3-201ENST00000343916 ZNF550Q7Z398 422 aa17.77■□□□□ 0.44
COL9A3-201ENST00000343916 OR51Q1Q8NH59 317 aa17.77■□□□□ 0.44
COL9A3-201ENST00000343916 AHCYL2Q96HN2 611 aaKnown RBP17.77■□□□□ 0.44
COL9A3-201ENST00000343916 TMEM246Q9BRR3 403 aa17.77■□□□□ 0.44
COL9A3-201ENST00000343916 BEX2Q9BXY8 128 aa17.77■□□□□ 0.44
COL9A3-201ENST00000343916 SPRTNQ9H040 489 aaPredicted RBP17.77■□□□□ 0.44
COL9A3-201ENST00000343916 PAQR5Q9NXK6 330 aaPredicted RBP17.77■□□□□ 0.44
COL9A3-201ENST00000343916 CHRNA9Q9UGM1 479 aa17.77■□□□□ 0.44
COL9A3-201ENST00000343916 FAM25AB3EWG3 89 aa17.77■□□□□ 0.43
COL9A3-201ENST00000343916 FAM25CB3EWG5 89 aa17.77■□□□□ 0.43
COL9A3-201ENST00000343916 FAM25GB3EWG6 89 aa17.77■□□□□ 0.43
COL9A3-201ENST00000343916 SDC3O75056 442 aa17.77■□□□□ 0.43
COL9A3-201ENST00000343916 ELK1P19419 428 aa17.77■□□□□ 0.43
COL9A3-201ENST00000343916 IGFBP4P22692 258 aa17.77■□□□□ 0.43
COL9A3-201ENST00000343916 DDOSTP39656 456 aa17.77■□□□□ 0.43
COL9A3-201ENST00000343916 KCNAB1Q14722 419 aa17.77■□□□□ 0.43
COL9A3-201ENST00000343916 CDK10Q15131 360 aa17.77■□□□□ 0.43
COL9A3-201ENST00000343916 ARHGAP11AQ6P4F7 1023 aa17.77■□□□□ 0.43
COL9A3-201ENST00000343916 G6PC3Q9BUM1 346 aa17.77■□□□□ 0.43
COL9A3-201ENST00000343916 MPDZO75970 2070 aa17.77■□□□□ 0.43
COL9A3-201ENST00000343916 A0A1B0GVC2 190 aa17.76■□□□□ 0.43
COL9A3-201ENST00000343916 A6NIN4 97 aa17.76■□□□□ 0.43
COL9A3-201ENST00000343916 B4DXG7 233 aa17.76■□□□□ 0.43
COL9A3-201ENST00000343916 PLPP2O43688 288 aa17.76■□□□□ 0.43
COL9A3-201ENST00000343916 TFP02787 698 aa17.76■□□□□ 0.43
COL9A3-201ENST00000343916 NAA10P41227 235 aaPredicted RBP17.76■□□□□ 0.43
COL9A3-201ENST00000343916 GABRA4P48169 554 aa17.76■□□□□ 0.43
COL9A3-201ENST00000343916 MTNR1BP49286 362 aa17.76■□□□□ 0.43
COL9A3-201ENST00000343916 SKP1P63208 163 aa17.76■□□□□ 0.43
COL9A3-201ENST00000343916 ELOCQ15369 112 aa17.76■□□□□ 0.43
COL9A3-201ENST00000343916 DEFB133Q30KQ1 61 aa17.76■□□□□ 0.43
COL9A3-201ENST00000343916 TP53I3Q53FA7 332 aa17.76■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms