RNA–Protein interactions for RNA: ENST00000341247.8

LIMA1-201, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMA1, Length 3,706 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-201ENST00000341247 AP3S1Q92572 193 aa9.51□□□□□ -0.89
LIMA1-201ENST00000341247 RASD2Q96D21 266 aa9.51□□□□□ -0.89
LIMA1-201ENST00000341247 TXNDC15Q96J42 360 aa9.51□□□□□ -0.89
LIMA1-201ENST00000341247 SIAEQ9HAT2 523 aa9.51□□□□□ -0.89
LIMA1-201ENST00000341247 SLC35A3Q9Y2D2 325 aa9.51□□□□□ -0.89
LIMA1-201ENST00000341247 CNTRLQ7Z7A1 2325 aa9.51□□□□□ -0.89
LIMA1-201ENST00000341247 A0A0B4J203 849 aa9.51□□□□□ -0.89
LIMA1-201ENST00000341247 CCDC182A6NF36 153 aa9.51□□□□□ -0.89
LIMA1-201ENST00000341247 OIP5O43482 229 aa9.51□□□□□ -0.89
LIMA1-201ENST00000341247 SBK2P0C263 348 aa9.51□□□□□ -0.89
LIMA1-201ENST00000341247 IMPDH2P12268 514 aa9.51□□□□□ -0.89
LIMA1-201ENST00000341247 HK1P19367 917 aa9.51□□□□□ -0.89
LIMA1-201ENST00000341247 RCVRNP35243 200 aa9.51□□□□□ -0.89
LIMA1-201ENST00000341247 PSMB10P40306 273 aa9.51□□□□□ -0.89
LIMA1-201ENST00000341247 RPL6Q02878 288 aaKnown RBP9.51□□□□□ -0.89
LIMA1-201ENST00000341247 TMEM44Q2T9K0 475 aa9.51□□□□□ -0.89
LIMA1-201ENST00000341247 CBLN3Q6UW01 205 aa9.51□□□□□ -0.89
LIMA1-201ENST00000341247 RTL4Q6ZR62 310 aa9.51□□□□□ -0.89
LIMA1-201ENST00000341247 SHISA6Q6ZSJ9 500 aa9.51□□□□□ -0.89
LIMA1-201ENST00000341247 CEACAM19Q7Z692 300 aa9.51□□□□□ -0.89
LIMA1-201ENST00000341247 RAB43Q86YS6 212 aa9.51□□□□□ -0.89
LIMA1-201ENST00000341247 DNAJA4Q8WW22 397 aaPredicted RBP9.51□□□□□ -0.89
LIMA1-201ENST00000341247 NDC1Q9BTX1 674 aa9.51□□□□□ -0.89
LIMA1-201ENST00000341247 ST6GALNAC1Q9NSC7 600 aaPredicted RBP9.51□□□□□ -0.89
LIMA1-201ENST00000341247 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa9.5□□□□□ -0.89
LIMA1-201ENST00000341247 CCDC85CA6NKD9 419 aa9.5□□□□□ -0.89
LIMA1-201ENST00000341247 PTP4A3O75365 173 aa9.5□□□□□ -0.89
LIMA1-201ENST00000341247 CD1CP29017 333 aa9.5□□□□□ -0.89
LIMA1-201ENST00000341247 FGF9P31371 208 aaPredicted RBP9.5□□□□□ -0.89
LIMA1-201ENST00000341247 ELOCQ15369 112 aa9.5□□□□□ -0.89
LIMA1-201ENST00000341247 C1orf189Q5VU69 101 aa9.5□□□□□ -0.89
LIMA1-201ENST00000341247 TRIQKQ629K1 86 aa9.5□□□□□ -0.89
LIMA1-201ENST00000341247 FAAH2Q6GMR7 532 aa9.5□□□□□ -0.89
LIMA1-201ENST00000341247 MED25Q71SY5 747 aa9.5□□□□□ -0.89
LIMA1-201ENST00000341247 RBM12BQ8IXT5 1001 aaKnown RBP9.5□□□□□ -0.89
LIMA1-201ENST00000341247 TSSK2Q96PF2 358 aa9.5□□□□□ -0.89
LIMA1-201ENST00000341247 ADGRL4Q9HBW9 690 aa9.5□□□□□ -0.89
LIMA1-201ENST00000341247 B3GAT2Q9NPZ5 323 aa9.5□□□□□ -0.89
LIMA1-201ENST00000341247 TRIM36Q9NQ86 728 aa9.5□□□□□ -0.89
LIMA1-201ENST00000341247 TRAPPC4Q9Y296 219 aa9.5□□□□□ -0.89
LIMA1-201ENST00000341247 TMEM5Q9Y2B1 443 aa9.5□□□□□ -0.89
LIMA1-201ENST00000341247 CLDN16Q9Y5I7 305 aa9.5□□□□□ -0.89
LIMA1-201ENST00000341247 THADAQ6YHU6 1953 aa9.5□□□□□ -0.89
LIMA1-201ENST00000341247 ZFHX4Q86UP3 3567 aa9.5□□□□□ -0.89
LIMA1-201ENST00000341247 SLC22A31A6NKX4 558 aa9.5□□□□□ -0.89
LIMA1-201ENST00000341247 CHURC1-FNTBB4DL54 471 aa9.5□□□□□ -0.89
LIMA1-201ENST00000341247 DYRK3O43781 588 aa9.5□□□□□ -0.89
LIMA1-201ENST00000341247 PRAMEF2O60811 474 aa9.5□□□□□ -0.89
LIMA1-201ENST00000341247 RGS9O75916 674 aaPredicted RBP9.5□□□□□ -0.89
LIMA1-201ENST00000341247 SLC6A6P31641 620 aa9.5□□□□□ -0.89
LIMA1-201ENST00000341247 FNTBP49356 437 aa9.5□□□□□ -0.89
LIMA1-201ENST00000341247 ZNF85Q03923 595 aa9.5□□□□□ -0.89
LIMA1-201ENST00000341247 CD226Q15762 336 aa9.5□□□□□ -0.89
LIMA1-201ENST00000341247 AGAP6Q5VW22 663 aa9.5□□□□□ -0.89
LIMA1-201ENST00000341247 XKRXQ6PP77 449 aa9.5□□□□□ -0.89
LIMA1-201ENST00000341247 ASB18Q6ZVZ8 466 aa9.5□□□□□ -0.89
LIMA1-201ENST00000341247 ARHGEF39Q8N4T4 335 aa9.5□□□□□ -0.89
LIMA1-201ENST00000341247 C19orf18Q8NEA5 215 aa9.5□□□□□ -0.89
LIMA1-201ENST00000341247 ITPKCQ96DU7 683 aa9.5□□□□□ -0.89
LIMA1-201ENST00000341247 HSPA12BQ96MM6 686 aa9.5□□□□□ -0.89
LIMA1-201ENST00000341247 WDFY2Q96P53 400 aa9.5□□□□□ -0.89
LIMA1-201ENST00000341247 AGAP4Q96P64 663 aa9.5□□□□□ -0.89
LIMA1-201ENST00000341247 TRIM2Q9C040 744 aa9.5□□□□□ -0.89
LIMA1-201ENST00000341247 TRPV5Q9NQA5 729 aa9.5□□□□□ -0.89
LIMA1-201ENST00000341247 ZMIZ1Q9ULJ6 1067 aa9.5□□□□□ -0.89
LIMA1-201ENST00000341247 IDSB3KWA1 339 aa9.49□□□□□ -0.89
LIMA1-201ENST00000341247 KHNYNO15037 678 aaKnown RBP9.49□□□□□ -0.89
LIMA1-201ENST00000341247 MT-ND5P03915 603 aa9.49□□□□□ -0.89
LIMA1-201ENST00000341247 KRT8P05787 483 aa9.49□□□□□ -0.89
LIMA1-201ENST00000341247 PSKH1P11801 424 aa9.49□□□□□ -0.89
LIMA1-201ENST00000341247 PEPDP12955 493 aa9.49□□□□□ -0.89
LIMA1-201ENST00000341247 MAGEB1P43366 347 aa9.49□□□□□ -0.89
LIMA1-201ENST00000341247 GPR3P46089 330 aa9.49□□□□□ -0.89
LIMA1-201ENST00000341247 INPP1P49441 399 aa9.49□□□□□ -0.89
LIMA1-201ENST00000341247 ATP12AP54707 1039 aa9.49□□□□□ -0.89
LIMA1-201ENST00000341247 OR1D5P58170 312 aa9.49□□□□□ -0.89
LIMA1-201ENST00000341247 GALEQ14376 348 aa9.49□□□□□ -0.89
LIMA1-201ENST00000341247 ZNF57Q68EA5 555 aaPredicted RBP9.49□□□□□ -0.89
LIMA1-201ENST00000341247 CD200R1LQ6Q8B3 271 aa9.49□□□□□ -0.89
LIMA1-201ENST00000341247 NCCRP1Q6ZVX7 275 aaPredicted RBP9.49□□□□□ -0.89
LIMA1-201ENST00000341247 ENKURQ8TC29 256 aa9.49□□□□□ -0.89
LIMA1-201ENST00000341247 TCTN2Q96GX1 697 aa9.49□□□□□ -0.89
LIMA1-201ENST00000341247 AHCYL2Q96HN2 611 aaKnown RBP9.49□□□□□ -0.89
LIMA1-201ENST00000341247 WACQ9BTA9 647 aa9.49□□□□□ -0.89
LIMA1-201ENST00000341247 MKKSQ9NPJ1 570 aaPredicted RBP9.49□□□□□ -0.89
LIMA1-201ENST00000341247 C14orf105Q9NVL8 296 aa9.49□□□□□ -0.89
LIMA1-201ENST00000341247 ASB6Q9NWX5 421 aa9.49□□□□□ -0.89
LIMA1-201ENST00000341247 RHPN2P1A8MT19 583 aa9.49□□□□□ -0.89
LIMA1-201ENST00000341247 J3QRE1 110 aa9.49□□□□□ -0.89
LIMA1-201ENST00000341247 SELENOFO60613 162 aa9.49□□□□□ -0.89
LIMA1-201ENST00000341247 ARL4DP49703 201 aa9.49□□□□□ -0.89
LIMA1-201ENST00000341247 ULK3Q6PHR2 472 aa9.49□□□□□ -0.89
LIMA1-201ENST00000341247 SYT13Q7L8C5 426 aa9.49□□□□□ -0.89
LIMA1-201ENST00000341247 TDHQ8IZJ6 230 aa9.49□□□□□ -0.89
LIMA1-201ENST00000341247 SGTBQ96EQ0 304 aa9.49□□□□□ -0.89
LIMA1-201ENST00000341247 ADOQ96SZ5 270 aa9.49□□□□□ -0.89
LIMA1-201ENST00000341247 LMF2Q9BU23 707 aaKnown RBP9.49□□□□□ -0.89
LIMA1-201ENST00000341247 PDE7BQ9NP56 450 aa9.49□□□□□ -0.89
LIMA1-201ENST00000341247 ISYNA1Q9NPH2 558 aa9.49□□□□□ -0.89
LIMA1-201ENST00000341247 EXTL2Q9UBQ6 330 aa9.49□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms