RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 H0YIV9 168 aa14.31□□□□□ -0.12
SHH-201ENST00000297261 SOX1O00570 391 aaPredicted RBP14.31□□□□□ -0.12
SHH-201ENST00000297261 FADS1O60427 444 aa14.31□□□□□ -0.12
SHH-201ENST00000297261 FURINP09958 794 aa14.31□□□□□ -0.12
SHH-201ENST00000297261 SNRPGP62308 76 aaKnown RBP14.31□□□□□ -0.12
SHH-201ENST00000297261 VAMP2P63027 116 aa14.31□□□□□ -0.12
SHH-201ENST00000297261 GPR155Q7Z3F1 870 aa14.31□□□□□ -0.12
SHH-201ENST00000297261 OR6V1Q8N148 313 aa14.31□□□□□ -0.12
SHH-201ENST00000297261 BPIFA2Q96DR5 249 aa14.31□□□□□ -0.12
SHH-201ENST00000297261 OR2M4Q96R27 311 aa14.31□□□□□ -0.12
SHH-201ENST00000297261 DPYSL5Q9BPU6 564 aa14.31□□□□□ -0.12
SHH-201ENST00000297261 ST6GALNAC1Q9NSC7 600 aaPredicted RBP14.31□□□□□ -0.12
SHH-201ENST00000297261 SLC6A5Q9Y345 797 aa14.31□□□□□ -0.12
SHH-201ENST00000297261 XCR1P46094 333 aa14.31□□□□□ -0.12
SHH-201ENST00000297261 AKR1C2P52895 323 aa14.31□□□□□ -0.12
SHH-201ENST00000297261 AKR1C1Q04828 323 aa14.31□□□□□ -0.12
SHH-201ENST00000297261 RAB11BQ15907 218 aa14.31□□□□□ -0.12
SHH-201ENST00000297261 PTOV1Q86YD1 416 aa14.31□□□□□ -0.12
SHH-201ENST00000297261 ABHD4Q8TB40 342 aa14.31□□□□□ -0.12
SHH-201ENST00000297261 PITX2Q99697 317 aa14.31□□□□□ -0.12
SHH-201ENST00000297261 C1QTNF3Q9BXJ4 246 aa14.31□□□□□ -0.12
SHH-201ENST00000297261 HHATLQ9HCP6 504 aa14.31□□□□□ -0.12
SHH-201ENST00000297261 NDUFB11Q9NX14 153 aa14.31□□□□□ -0.12
SHH-201ENST00000297261 SCDO00767 359 aa14.31□□□□□ -0.12
SHH-201ENST00000297261 UBBP0CG47 229 aa14.31□□□□□ -0.12
SHH-201ENST00000297261 UBCP0CG48 685 aaKnown RBP14.31□□□□□ -0.12
SHH-201ENST00000297261 SLC6A9P48067 706 aa14.31□□□□□ -0.12
SHH-201ENST00000297261 EVX1P49640 407 aa14.31□□□□□ -0.12
SHH-201ENST00000297261 CDK3Q00526 305 aa14.31□□□□□ -0.12
SHH-201ENST00000297261 ZNF800Q2TB10 664 aaPredicted RBP eCLIP14.31□□□□□ -0.12
SHH-201ENST00000297261 HACD4Q5VWC8 232 aa14.31□□□□□ -0.12
SHH-201ENST00000297261 ZNF585AQ6P3V2 769 aa14.31□□□□□ -0.12
SHH-201ENST00000297261 KCTD18Q6PI47 426 aaPredicted RBP14.31□□□□□ -0.12
SHH-201ENST00000297261 SLC9B2Q86UD5 537 aa14.31□□□□□ -0.12
SHH-201ENST00000297261 VN1R2Q8NFZ6 395 aa14.31□□□□□ -0.12
SHH-201ENST00000297261 OR5M3Q8NGP4 307 aa14.31□□□□□ -0.12
SHH-201ENST00000297261 OR2AJ1Q8NGZ0 328 aa14.31□□□□□ -0.12
SHH-201ENST00000297261 TCTEX1D2Q8WW35 142 aa14.31□□□□□ -0.12
SHH-201ENST00000297261 SLC25A44Q96H78 314 aaPredicted RBP14.31□□□□□ -0.12
SHH-201ENST00000297261 ST6GAL2Q96JF0 529 aa14.31□□□□□ -0.12
SHH-201ENST00000297261 C1QTNF2Q9BXJ5 285 aa14.31□□□□□ -0.12
SHH-201ENST00000297261 ACTRT3Q9BYD9 372 aa14.31□□□□□ -0.12
SHH-201ENST00000297261 ACTL8Q9H568 366 aa14.31□□□□□ -0.12
SHH-201ENST00000297261 MRPS17Q9Y2R5 130 aaKnown RBP14.31□□□□□ -0.12
SHH-201ENST00000297261 ZAR1LA6NP61 321 aa14.31□□□□□ -0.12
SHH-201ENST00000297261 UPK1AO00322 258 aa14.31□□□□□ -0.12
SHH-201ENST00000297261 DSCR3O14972 297 aa14.31□□□□□ -0.12
SHH-201ENST00000297261 ZNF254O75437 659 aa14.31□□□□□ -0.12
SHH-201ENST00000297261 NUDT1P36639 197 aa14.31□□□□□ -0.12
SHH-201ENST00000297261 ETV6P41212 452 aa14.31□□□□□ -0.12
SHH-201ENST00000297261 S100A12P80511 92 aa14.31□□□□□ -0.12
SHH-201ENST00000297261 GPR50Q13585 617 aa14.31□□□□□ -0.12
SHH-201ENST00000297261 ELOAQ14241 798 aaKnown RBP14.31□□□□□ -0.12
SHH-201ENST00000297261 ZBTB37Q5TC79 503 aa14.31□□□□□ -0.12
SHH-201ENST00000297261 KLHDC8BQ8IXV7 354 aa14.31□□□□□ -0.12
SHH-201ENST00000297261 PNLDC1Q8NA58 520 aaKnown RBP14.31□□□□□ -0.12
SHH-201ENST00000297261 TMEM168Q9H0V1 697 aa14.31□□□□□ -0.12
SHH-201ENST00000297261 PNO1Q9NRX1 252 aaKnown RBP14.31□□□□□ -0.12
SHH-201ENST00000297261 NDUFS1P28331 727 aa14.3□□□□□ -0.12
SHH-201ENST00000297261 CXADRP78310 365 aa14.3□□□□□ -0.12
SHH-201ENST00000297261 RASGEF1BQ0VAM2 473 aa14.3□□□□□ -0.12
SHH-201ENST00000297261 CCSMST1Q4G0I0 132 aa14.3□□□□□ -0.12
SHH-201ENST00000297261 NKAPLQ5M9Q1 402 aa14.3□□□□□ -0.12
SHH-201ENST00000297261 TIGD3Q6B0B8 471 aa14.3□□□□□ -0.12
SHH-201ENST00000297261 TSSK4Q6SA08 328 aa14.3□□□□□ -0.12
SHH-201ENST00000297261 ESPNLQ6ZVH7 1005 aa14.3□□□□□ -0.12
SHH-201ENST00000297261 ZNF550Q7Z398 422 aa14.3□□□□□ -0.12
SHH-201ENST00000297261 SLC35F2Q8IXU6 374 aa14.3□□□□□ -0.12
SHH-201ENST00000297261 EID2BQ96D98 161 aa14.3□□□□□ -0.12
SHH-201ENST00000297261 MRPL38Q96DV4 380 aaKnown RBP14.3□□□□□ -0.12
SHH-201ENST00000297261 TMEM14AQ9Y6G1 99 aa14.3□□□□□ -0.12
SHH-201ENST00000297261 TMEM202A6NGA9 273 aa14.3□□□□□ -0.12
SHH-201ENST00000297261 H3BUI4 141 aa14.3□□□□□ -0.12
SHH-201ENST00000297261 PET100P0DJ07 73 aa14.3□□□□□ -0.12
SHH-201ENST00000297261 IMPA1P29218 277 aa14.3□□□□□ -0.12
SHH-201ENST00000297261 MTNR1BP49286 362 aa14.3□□□□□ -0.12
SHH-201ENST00000297261 FABP5Q01469 135 aa14.3□□□□□ -0.12
SHH-201ENST00000297261 HENMT1Q5T8I9 393 aaKnown RBP14.3□□□□□ -0.12
SHH-201ENST00000297261 PARM1Q6UWI2 310 aa14.3□□□□□ -0.12
SHH-201ENST00000297261 PLPP6Q8IY26 295 aa14.3□□□□□ -0.12
SHH-201ENST00000297261 THRSPQ92748 146 aa14.3□□□□□ -0.12
SHH-201ENST00000297261 LGALS8O00214 317 aa14.3□□□□□ -0.12
SHH-201ENST00000297261 NDUFB2O95178 105 aa14.3□□□□□ -0.12
SHH-201ENST00000297261 TGM6O95932 706 aa14.3□□□□□ -0.12
SHH-201ENST00000297261 GABRB1P18505 474 aa14.3□□□□□ -0.12
SHH-201ENST00000297261 TUBG1P23258 451 aa14.3□□□□□ -0.12
SHH-201ENST00000297261 SQSTM1Q13501 440 aa14.3□□□□□ -0.12
SHH-201ENST00000297261 DYRK1AQ13627 763 aa14.3□□□□□ -0.12
SHH-201ENST00000297261 VASNQ6EMK4 673 aa14.3□□□□□ -0.12
SHH-201ENST00000297261 ZC3H14Q6PJT7 736 aaKnown RBP14.3□□□□□ -0.12
SHH-201ENST00000297261 LRRC69Q6ZNQ3 347 aa14.3□□□□□ -0.12
SHH-201ENST00000297261 CD163Q86VB7 1156 aa14.3□□□□□ -0.12
SHH-201ENST00000297261 MSRB3Q8IXL7 192 aa14.3□□□□□ -0.12
SHH-201ENST00000297261 C16orf58Q96GQ5 468 aa14.3□□□□□ -0.12
SHH-201ENST00000297261 DGAT2Q96PD7 388 aa14.3□□□□□ -0.12
SHH-201ENST00000297261 CYP8B1Q9UNU6 501 aa14.3□□□□□ -0.12
SHH-201ENST00000297261 NPC1O15118 1278 aa14.29□□□□□ -0.12
SHH-201ENST00000297261 HSD11B1P28845 292 aa14.29□□□□□ -0.12
SHH-201ENST00000297261 TRIM23P36406 574 aa14.29□□□□□ -0.12
SHH-201ENST00000297261 GALK2Q01415 458 aa14.29□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms