RNA–Protein interactions for RNA: ENST00000292510.5

VPS28-201, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 979 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-201ENST00000292510 NPDC1Q9NQX5 325 aaPredicted RBP11.97□□□□□ -0.49
VPS28-201ENST00000292510 ZNF629Q9UEG4 869 aaPredicted RBP11.97□□□□□ -0.49
VPS28-201ENST00000292510 MCTS1Q9ULC4 181 aaKnown RBP11.97□□□□□ -0.49
VPS28-201ENST00000292510 CLEC4AQ9UMR7 237 aa11.97□□□□□ -0.49
VPS28-201ENST00000292510 INTS1Q8N201 2190 aaKnown RBP11.96□□□□□ -0.49
VPS28-201ENST00000292510 PRORSD1PA6NEY8 169 aa11.96□□□□□ -0.49
VPS28-201ENST00000292510 FAM220BPB1ANY3 271 aa11.96□□□□□ -0.49
VPS28-201ENST00000292510 EEF1E1-BLOC1S5C9J1V9 151 aa11.96□□□□□ -0.49
VPS28-201ENST00000292510 NME4O00746 187 aa11.96□□□□□ -0.49
VPS28-201ENST00000292510 EEF1E1O43324 174 aaKnown RBP11.96□□□□□ -0.49
VPS28-201ENST00000292510 TNFSF13O75888 250 aa11.96□□□□□ -0.49
VPS28-201ENST00000292510 DCTN3O75935 186 aa11.96□□□□□ -0.49
VPS28-201ENST00000292510 FAM107AO95990 144 aa11.96□□□□□ -0.49
VPS28-201ENST00000292510 CD247P20963 164 aa11.96□□□□□ -0.49
VPS28-201ENST00000292510 HTR2AP28223 471 aa11.96□□□□□ -0.49
VPS28-201ENST00000292510 OPRM1P35372 400 aa11.96□□□□□ -0.49
VPS28-201ENST00000292510 HTR3AP46098 478 aa11.96□□□□□ -0.49
VPS28-201ENST00000292510 SLC7A2P52569 658 aa11.96□□□□□ -0.49
VPS28-201ENST00000292510 COPZ1P61923 177 aa11.96□□□□□ -0.49
VPS28-201ENST00000292510 BNIP2Q12982 314 aa11.96□□□□□ -0.49
VPS28-201ENST00000292510 ZNF239Q16600 458 aaKnown RBP11.96□□□□□ -0.49
VPS28-201ENST00000292510 WBP2NLQ6ICG8 309 aa11.96□□□□□ -0.49
VPS28-201ENST00000292510 VWA1Q6PCB0 445 aa11.96□□□□□ -0.49
VPS28-201ENST00000292510 PATL1Q86TB9 770 aaKnown RBP11.96□□□□□ -0.49
VPS28-201ENST00000292510 SLC30A8Q8IWU4 369 aa11.96□□□□□ -0.49
VPS28-201ENST00000292510 CNEP1R1Q8N9A8 125 aa11.96□□□□□ -0.49
VPS28-201ENST00000292510 C3orf49Q96BT1 292 aa11.96□□□□□ -0.49
VPS28-201ENST00000292510 ZFP3Q96NJ6 502 aa11.96□□□□□ -0.49
VPS28-201ENST00000292510 SFXN3Q9BWM7 321 aa11.96□□□□□ -0.49
VPS28-201ENST00000292510 ADAM19Q9H013 955 aa11.96□□□□□ -0.49
VPS28-201ENST00000292510 ARL8BQ9NVJ2 186 aa11.96□□□□□ -0.49
VPS28-201ENST00000292510 PAQR5Q9NXK6 330 aaPredicted RBP11.96□□□□□ -0.49
VPS28-201ENST00000292510 ZC3H12DA2A288 527 aaKnown RBP11.95□□□□□ -0.5
VPS28-201ENST00000292510 M0R3H8 397 aa11.95□□□□□ -0.5
VPS28-201ENST00000292510 TPST2O60704 377 aa11.95□□□□□ -0.5
VPS28-201ENST00000292510 IL18BPO95998 194 aa11.95□□□□□ -0.5
VPS28-201ENST00000292510 FCGR2AP12318 317 aa11.95□□□□□ -0.5
VPS28-201ENST00000292510 ENPP1P22413 925 aa11.95□□□□□ -0.5
VPS28-201ENST00000292510 CXCR1P25024 350 aa11.95□□□□□ -0.5
VPS28-201ENST00000292510 KIR2DL2P43627 348 aaPredicted RBP11.95□□□□□ -0.5
VPS28-201ENST00000292510 KCNJ5P48544 419 aa11.95□□□□□ -0.5
VPS28-201ENST00000292510 DIO1P49895 249 aa11.95□□□□□ -0.5
VPS28-201ENST00000292510 RGS8P57771 180 aaPredicted RBP11.95□□□□□ -0.5
VPS28-201ENST00000292510 PSME3P61289 254 aa11.95□□□□□ -0.5
VPS28-201ENST00000292510 LIPEQ05469 1076 aa11.95□□□□□ -0.5
VPS28-201ENST00000292510 MYBPHQ13203 477 aa11.95□□□□□ -0.5
VPS28-201ENST00000292510 SNTB1Q13884 538 aaKnown RBP11.95□□□□□ -0.5
VPS28-201ENST00000292510 GUSBP1Q15486 140 aa11.95□□□□□ -0.5
VPS28-201ENST00000292510 INTS11Q5TA45 600 aaKnown RBP11.95□□□□□ -0.5
VPS28-201ENST00000292510 GKAP1Q5VSY0 366 aaPredicted RBP11.95□□□□□ -0.5
VPS28-201ENST00000292510 OR2A2Q6IF42 318 aa11.95□□□□□ -0.5
VPS28-201ENST00000292510 ERICH5Q6P6B1 374 aa11.95□□□□□ -0.5
VPS28-201ENST00000292510 HACD2Q6Y1H2 254 aa11.95□□□□□ -0.5
VPS28-201ENST00000292510 TMPPEQ6ZT21 453 aa11.95□□□□□ -0.5
VPS28-201ENST00000292510 CCDC80Q76M96 950 aa11.95□□□□□ -0.5
VPS28-201ENST00000292510 ARPINQ7Z6K5 226 aa11.95□□□□□ -0.5
VPS28-201ENST00000292510 LUZP2Q86TE4 346 aa11.95□□□□□ -0.5
VPS28-201ENST00000292510 ANKS4BQ8N8V4 417 aa11.95□□□□□ -0.5
VPS28-201ENST00000292510 OR2T12Q8NG77 320 aa11.95□□□□□ -0.5
VPS28-201ENST00000292510 OR4D11Q8NGI4 311 aa11.95□□□□□ -0.5
VPS28-201ENST00000292510 VANGL1Q8TAA9 524 aaPredicted RBP11.95□□□□□ -0.5
VPS28-201ENST00000292510 ABHD3Q8WU67 409 aa11.95□□□□□ -0.5
VPS28-201ENST00000292510 SLC25A43Q8WUT9 341 aaPredicted RBP11.95□□□□□ -0.5
VPS28-201ENST00000292510 SLC35B4Q969S0 331 aa11.95□□□□□ -0.5
VPS28-201ENST00000292510 CPNE4Q96A23 557 aaPredicted RBP11.95□□□□□ -0.5
VPS28-201ENST00000292510 STARD4Q96DR4 205 aa11.95□□□□□ -0.5
VPS28-201ENST00000292510 HOPXQ9BPY8 73 aaPredicted RBP11.95□□□□□ -0.5
VPS28-201ENST00000292510 CHST11Q9NPF2 352 aa11.95□□□□□ -0.5
VPS28-201ENST00000292510 TIGARQ9NQ88 270 aa11.95□□□□□ -0.5
VPS28-201ENST00000292510 SLC13A4Q9UKG4 626 aa11.95□□□□□ -0.5
VPS28-201ENST00000292510 SPIN1Q9Y657 262 aaPredicted RBP11.95□□□□□ -0.5
VPS28-201ENST00000292510 CYSRT1A8MQ03 144 aa11.94□□□□□ -0.5
VPS28-201ENST00000292510 SULT2B1O00204 365 aa11.94□□□□□ -0.5
VPS28-201ENST00000292510 SMAD9O15198 467 aaKnown RBP11.94□□□□□ -0.5
VPS28-201ENST00000292510 SMNDC1O75940 238 aaKnown RBP eCLIP11.94□□□□□ -0.5
VPS28-201ENST00000292510 LGI1O95970 557 aa11.94□□□□□ -0.5
VPS28-201ENST00000292510 PLGP00747 810 aaPredicted RBP11.94□□□□□ -0.5
VPS28-201ENST00000292510 FESP07332 822 aa11.94□□□□□ -0.5
VPS28-201ENST00000292510 GSK3BP49841 420 aa11.94□□□□□ -0.5
VPS28-201ENST00000292510 ASCL1P50553 236 aa11.94□□□□□ -0.5
VPS28-201ENST00000292510 RAC3P60763 192 aa11.94□□□□□ -0.5
VPS28-201ENST00000292510 VEZF1Q14119 521 aa11.94□□□□□ -0.5
VPS28-201ENST00000292510 NPTX1Q15818 432 aa11.94□□□□□ -0.5
VPS28-201ENST00000292510 FCRLAQ7L513 359 aa11.94□□□□□ -0.5
VPS28-201ENST00000292510 BTLAQ7Z6A9 289 aa11.94□□□□□ -0.5
VPS28-201ENST00000292510 ATG4DQ86TL0 474 aaPredicted RBP11.94□□□□□ -0.5
VPS28-201ENST00000292510 RBM45Q8IUH3 476 aaKnown RBP11.94□□□□□ -0.5
VPS28-201ENST00000292510 MICU2Q8IYU8 434 aa11.94□□□□□ -0.5
VPS28-201ENST00000292510 FITM2Q8N6M3 262 aa11.94□□□□□ -0.5
VPS28-201ENST00000292510 CCDC197Q8NCU1 140 aa11.94□□□□□ -0.5
VPS28-201ENST00000292510 BHLHE22Q8NFJ8 381 aaPredicted RBP11.94□□□□□ -0.5
VPS28-201ENST00000292510 OR52E4Q8NGH9 312 aa11.94□□□□□ -0.5
VPS28-201ENST00000292510 SLC26A7Q8TE54 656 aa11.94□□□□□ -0.5
VPS28-201ENST00000292510 RNF128Q8TEB7 428 aa11.94□□□□□ -0.5
VPS28-201ENST00000292510 DDIT4LQ96D03 193 aa11.94□□□□□ -0.5
VPS28-201ENST00000292510 ARHGDIGQ99819 225 aa11.94□□□□□ -0.5
VPS28-201ENST00000292510 KLHL28Q9NXS3 571 aa11.94□□□□□ -0.5
VPS28-201ENST00000292510 JKAMPQ9P055 326 aa11.94□□□□□ -0.5
VPS28-201ENST00000292510 TAGLN3Q9UI15 199 aa11.94□□□□□ -0.5
VPS28-201ENST00000292510 PACSIN3Q9UKS6 424 aa11.94□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms